Wall clock time and date at job start Sat Apr 11 2020 05:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48495 * 109.47216 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 299.99948 * 3 2 1 6 6 H 1.48501 * 109.47057 * 59.99929 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46947 * 179.97438 * 10 9 7 12 12 H 1.09001 * 109.47165 * 55.00163 * 11 10 9 13 13 N 1.46898 * 109.47542 * 294.99983 * 11 10 9 14 14 C 1.50708 * 109.47139 * 174.99712 * 11 10 9 15 15 O 1.21284 * 119.99720 * 99.99690 * 14 11 10 16 16 N 1.34774 * 119.99974 * 280.00620 * 14 11 10 17 17 C 1.47079 * 120.88218 * 359.71345 * 16 14 11 18 18 C 1.53702 * 108.27337 * 128.75977 * 17 16 14 19 19 N 1.46895 * 109.25582 * 54.08462 * 18 17 16 20 20 C 1.46903 * 110.99873 * 172.60979 * 19 18 17 21 21 C 1.52999 * 109.46785 * 294.29803 * 20 19 18 22 22 C 1.53175 * 109.54933 * 294.82278 * 21 20 19 23 23 C 1.53100 * 109.16125 * 183.24190 * 22 21 20 24 24 O 1.42904 * 109.48630 * 57.47526 * 23 22 21 25 25 C 1.42896 * 114.09590 * 298.88937 * 24 23 22 26 26 C 1.53084 * 109.41831 * 61.15857 * 25 24 23 27 27 C 1.46902 * 111.27147 * 296.75324 * 19 18 17 28 28 C 1.47082 * 120.87811 * 180.02562 * 16 14 11 29 29 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 31 31 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 32 32 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 33 33 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 34 34 H 1.00899 * 111.00442 * 176.05083 * 13 11 10 35 35 H 1.00906 * 110.99610 * 299.99813 * 13 11 10 36 36 H 1.08995 * 109.63105 * 248.52544 * 17 16 14 37 37 H 1.08997 * 109.63104 * 9.11195 * 17 16 14 38 38 H 1.08995 * 109.64720 * 294.07729 * 18 17 16 39 39 H 1.08996 * 109.42029 * 173.95231 * 18 17 16 40 40 H 1.09003 * 109.47326 * 54.29802 * 20 19 18 41 41 H 1.08999 * 109.47007 * 174.30231 * 20 19 18 42 42 H 1.09005 * 109.54358 * 55.00086 * 21 20 19 43 43 H 1.08998 * 109.52232 * 303.06195 * 22 21 20 44 44 H 1.09005 * 109.51895 * 63.24509 * 22 21 20 45 45 H 1.08997 * 109.40569 * 297.49177 * 23 22 21 46 46 H 1.09002 * 109.48262 * 177.50833 * 23 22 21 47 47 H 1.09002 * 109.48388 * 301.17088 * 25 24 23 48 48 H 1.09003 * 109.48276 * 181.14655 * 25 24 23 49 49 H 1.08997 * 109.52497 * 182.48366 * 26 25 24 50 50 H 1.09004 * 109.57675 * 62.32808 * 26 25 24 51 51 H 1.09002 * 109.48926 * 303.14945 * 27 19 18 52 52 H 1.08990 * 109.49598 * 183.06397 * 27 19 18 53 53 H 1.08991 * 109.63095 * 350.88947 * 28 16 14 54 54 H 1.08996 * 109.62947 * 111.47424 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4802 -4.9870 -0.0020 12 1 0.7884 -5.0068 -0.8441 13 7 0.7279 -5.1187 1.2528 14 6 2.4548 -6.1298 -0.1257 15 8 2.7863 -6.7535 0.8603 16 7 2.9583 -6.4586 -1.3318 17 6 2.5651 -5.7193 -2.5410 18 6 3.8425 -5.2870 -3.2783 19 7 4.6858 -6.4656 -3.5183 20 6 5.8321 -6.1276 -4.3725 21 6 5.3328 -5.7382 -5.7654 22 6 4.6795 -6.9519 -6.4335 23 6 4.2561 -6.5753 -7.8558 24 8 5.3959 -6.1199 -8.5876 25 6 6.0179 -4.9581 -8.0351 26 6 6.5141 -5.2703 -6.6210 27 6 5.1306 -7.0688 -2.2549 28 6 3.9102 -7.5707 -1.4748 29 1 -0.4849 0.8401 0.0004 30 1 0.6240 -2.5575 0.8880 31 1 0.6246 -2.5563 -0.8919 32 1 2.8725 -3.6039 -0.8910 33 1 2.8713 -3.6047 0.8890 34 1 0.1635 -5.9551 1.2501 35 1 1.3474 -5.1032 2.0492 36 1 1.9668 -6.3632 -3.1856 37 1 1.9871 -4.8389 -2.2602 38 1 4.3897 -4.5657 -2.6713 39 1 3.5743 -4.8314 -4.2314 40 1 6.3772 -5.2912 -3.9350 41 1 6.4932 -6.9906 -4.4517 42 1 4.6033 -4.9328 -5.6793 43 1 5.3938 -7.7743 -6.4732 44 1 3.8040 -7.2562 -5.8598 45 1 3.5104 -5.7815 -7.8134 46 1 3.8306 -7.4478 -8.3515 47 1 5.2953 -4.1430 -7.9951 48 1 6.8616 -4.6655 -8.6601 49 1 6.9494 -4.3730 -6.1813 50 1 7.2672 -6.0572 -6.6636 51 1 5.6599 -6.3227 -1.6622 52 1 5.7964 -7.9055 -2.4659 53 1 4.2221 -7.9148 -0.4888 54 1 3.4386 -8.3888 -2.0191 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424142084.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:46 Heat of formation + Delta-G solvation = -112.026604 kcal Electronic energy + Delta-G solvation = -31079.060109 eV Core-core repulsion = 27048.958674 eV Total energy + Delta-G solvation = -4030.101435 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 3.00 seconds Orbital eigenvalues (eV) -41.55905 -40.45758 -39.13128 -36.91726 -36.41232 -34.85384 -34.24484 -32.23780 -31.94643 -31.91788 -29.68181 -28.18315 -26.74846 -25.38538 -24.71411 -24.39570 -23.24464 -22.37254 -21.76355 -20.78957 -19.87476 -18.70234 -18.29121 -17.29229 -17.08524 -16.98328 -16.86435 -16.52961 -16.40799 -16.23368 -15.94139 -15.78337 -15.58818 -15.29030 -15.09298 -14.91104 -14.31045 -14.30694 -14.13324 -13.84657 -13.68922 -13.41599 -13.18705 -13.01452 -12.84084 -12.78490 -12.56691 -12.48239 -12.37256 -12.33167 -12.19787 -12.17123 -11.75272 -11.64681 -11.60331 -11.35806 -11.22786 -11.10479 -10.98762 -10.50027 -10.41689 -9.86300 -9.64469 -9.32013 -8.14414 -6.24482 1.40062 1.41404 1.44548 1.53541 1.91035 2.43553 2.78352 3.03976 3.18774 3.40043 3.62149 3.67684 3.83097 3.88252 3.96016 3.98741 4.04569 4.16532 4.19153 4.21962 4.26529 4.30415 4.37855 4.41888 4.51729 4.53078 4.67937 4.68786 4.71366 4.73488 4.80115 4.82396 4.85713 4.90437 4.91752 4.98140 5.00507 5.04258 5.21365 5.22328 5.33304 5.42560 5.46983 5.56225 5.82915 5.94834 5.96775 5.97625 6.07246 6.28815 6.30646 6.32938 6.48495 6.93643 7.01510 7.43646 8.96849 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.008743 B = 0.003077 C = 0.002449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3201.952274 B = 9096.984431 C =11431.120020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.004 3.996 3 Si 0.957 3.043 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.282 1.282 7 C -0.541 4.541 8 H 0.053 0.947 9 C 0.042 3.958 10 C -0.078 4.078 11 C 0.085 3.915 12 H 0.109 0.891 13 N -0.818 5.818 14 C 0.488 3.512 15 O -0.584 6.584 16 N -0.607 5.607 17 C 0.106 3.894 18 C 0.041 3.959 19 N -0.528 5.528 20 C 0.065 3.935 21 C -0.085 4.085 22 C -0.131 4.131 23 C 0.054 3.946 24 O -0.406 6.406 25 C 0.057 3.943 26 C -0.147 4.147 27 C 0.049 3.951 28 C 0.115 3.885 29 H 0.262 0.738 30 H 0.005 0.995 31 H -0.003 1.003 32 H 0.063 0.937 33 H 0.037 0.963 34 H 0.347 0.653 35 H 0.344 0.656 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.024 0.976 39 H 0.105 0.895 40 H 0.029 0.971 41 H 0.085 0.915 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.084 0.916 45 H 0.051 0.949 46 H 0.099 0.901 47 H 0.051 0.949 48 H 0.102 0.898 49 H 0.078 0.922 50 H 0.072 0.928 51 H 0.021 0.979 52 H 0.108 0.892 53 H 0.078 0.922 54 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.586 -16.428 -15.716 25.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.782 3.218 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.208 1.208 7 C -0.580 4.580 8 H 0.071 0.929 9 C 0.005 3.995 10 C -0.117 4.117 11 C -0.030 4.030 12 H 0.127 0.873 13 N -0.347 5.347 14 C 0.275 3.725 15 O -0.465 6.465 16 N -0.340 5.340 17 C -0.016 4.016 18 C -0.087 4.087 19 N -0.253 5.253 20 C -0.062 4.062 21 C -0.104 4.104 22 C -0.168 4.168 23 C -0.022 4.022 24 O -0.326 6.326 25 C -0.019 4.019 26 C -0.185 4.185 27 C -0.080 4.080 28 C -0.008 4.008 29 H 0.071 0.929 30 H 0.023 0.977 31 H 0.015 0.985 32 H 0.082 0.918 33 H 0.056 0.944 34 H 0.160 0.840 35 H 0.158 0.842 36 H 0.115 0.885 37 H 0.108 0.892 38 H 0.042 0.958 39 H 0.123 0.877 40 H 0.047 0.953 41 H 0.104 0.896 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.103 0.897 45 H 0.069 0.931 46 H 0.118 0.882 47 H 0.070 0.930 48 H 0.120 0.880 49 H 0.096 0.904 50 H 0.091 0.909 51 H 0.039 0.961 52 H 0.126 0.874 53 H 0.096 0.904 54 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 11.041 -16.395 -15.812 25.313 hybrid contribution 1.139 0.926 1.152 1.866 sum 12.180 -15.469 -14.661 24.547 Atomic orbital electron populations 1.70108 1.07537 1.27430 1.51698 1.25853 0.95666 1.02848 0.94993 0.85527 0.79027 0.79483 0.77760 1.18969 1.20143 1.20773 1.21706 0.93190 0.92700 1.50362 0.92898 1.18803 0.93727 0.91095 0.95866 1.21379 0.97700 0.92216 1.00359 1.21643 0.93761 0.92181 0.95431 0.87308 1.58997 1.27170 1.45281 1.03221 1.22407 0.82109 0.85356 0.82636 1.90617 1.62407 1.55587 1.37886 1.48347 1.44625 1.33745 1.07235 1.22179 0.97032 0.97223 0.85197 1.22586 0.93899 0.91501 1.00756 1.61981 1.20187 1.28203 1.14891 1.22143 0.91536 1.00193 0.92348 1.21213 0.97439 0.98266 0.93475 1.22023 1.01934 0.97502 0.95365 1.22742 0.87355 0.99727 0.92424 1.87893 1.45390 1.46397 1.52886 1.22661 0.97667 0.87214 0.94372 1.22175 0.98140 1.02446 0.95739 1.22437 0.96212 0.99662 0.89672 1.21758 0.89393 0.89010 1.00627 0.92909 0.97667 0.98457 0.91806 0.94381 0.84020 0.84212 0.88509 0.89235 0.95798 0.87740 0.95251 0.89639 0.91165 0.91702 0.89728 0.93109 0.88243 0.93039 0.88019 0.90356 0.90942 0.96066 0.87417 0.90396 0.89356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.76 13.29 21.45 0.28 -55.48 16 2 C 0.00 0.25 5.46 84.65 0.46 0.71 16 3 Si 0.96 43.91 29.54 68.60 2.03 45.94 16 4 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 6 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 7 C -0.54 -30.35 9.11 25.60 0.23 -30.12 16 8 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 9 C 0.04 2.16 4.86 29.85 0.15 2.31 16 10 C -0.08 -3.15 4.45 30.59 0.14 -3.01 16 11 C 0.09 2.87 2.29 44.17 0.10 2.97 16 12 H 0.11 3.40 6.85 -2.39 -0.02 3.38 16 13 N -0.82 -28.05 8.44 -171.80 -1.45 -29.50 16 14 C 0.49 15.45 6.95 87.66 0.61 16.06 16 15 O -0.58 -21.70 15.70 -3.04 -0.05 -21.75 16 16 N -0.61 -15.22 3.00 -816.96 -2.45 -17.67 16 17 C 0.11 2.24 6.00 86.51 0.52 2.76 16 18 C 0.04 0.80 5.48 86.54 0.47 1.27 16 19 N -0.53 -8.69 4.16 -894.23 -3.72 -12.40 16 20 C 0.07 0.93 4.36 86.30 0.38 1.30 16 21 C -0.09 -1.13 2.19 -10.67 -0.02 -1.16 16 22 C -0.13 -1.70 5.28 30.69 0.16 -1.54 16 23 C 0.05 0.75 6.84 72.02 0.49 1.25 16 24 O -0.41 -7.19 10.77 -148.98 -1.60 -8.80 16 25 C 0.06 0.78 6.84 72.01 0.49 1.28 16 26 C -0.15 -1.82 5.43 30.68 0.17 -1.65 16 27 C 0.05 0.86 5.62 86.40 0.49 1.35 16 28 C 0.11 2.41 6.60 86.36 0.57 2.98 16 29 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 30 H 0.00 0.28 7.75 -2.39 -0.02 0.26 16 31 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 32 H 0.06 2.40 6.95 -2.39 -0.02 2.38 16 33 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 34 H 0.35 10.21 9.06 -89.69 -0.81 9.40 16 35 H 0.34 12.15 8.58 -89.69 -0.77 11.38 16 36 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.09 2.15 4.86 -2.39 -0.01 2.14 16 38 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.10 1.75 6.08 -2.39 -0.01 1.73 16 40 H 0.03 0.47 8.12 -2.39 -0.02 0.45 16 41 H 0.09 1.07 7.97 -2.39 -0.02 1.05 16 42 H 0.07 1.03 6.20 -2.38 -0.01 1.01 16 43 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.08 1.13 7.86 -2.38 -0.02 1.11 16 45 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 49 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 50 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 51 H 0.02 0.46 8.14 -2.39 -0.02 0.44 16 52 H 0.11 1.42 7.99 -2.39 -0.02 1.40 16 53 H 0.08 1.90 7.06 -2.39 -0.02 1.88 16 54 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -68.81 411.20 -2.25 -71.07 By element: Atomic # 1 Polarization: 32.53 SS G_CDS: -0.69 Total: 31.83 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: 5.40 Total: -3.24 kcal Atomic # 7 Polarization: -107.72 SS G_CDS: -7.34 Total: -115.05 kcal Atomic # 8 Polarization: -28.89 SS G_CDS: -1.65 Total: -30.54 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -68.81 -2.25 -71.07 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424142084.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.959 kcal (2) G-P(sol) polarization free energy of solvation -68.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.00 seconds