Wall clock time and date at job start Sat Apr 11 2020 05:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00133 * 2 1 4 4 H 1.48501 * 109.47119 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46706 * 299.99477 * 3 2 1 6 6 H 1.48495 * 109.47681 * 59.99514 * 3 2 1 7 7 C 1.37877 * 120.00140 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00642 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99618 * 0.02562 * 7 2 1 10 10 C 1.53006 * 109.47134 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47304 * 179.97438 * 10 9 7 12 12 H 1.09004 * 109.47256 * 305.00490 * 11 10 9 13 13 N 1.46898 * 109.46785 * 65.00183 * 11 10 9 14 14 C 1.50700 * 109.47278 * 185.00229 * 11 10 9 15 15 O 1.21284 * 119.99764 * 260.00403 * 14 11 10 16 16 N 1.34769 * 120.00019 * 79.99997 * 14 11 10 17 17 C 1.47080 * 120.88284 * 180.02562 * 16 14 11 18 18 C 1.53242 * 108.52146 * 231.20803 * 17 16 14 19 19 N 1.46895 * 109.34059 * 306.16906 * 18 17 16 20 20 C 1.46898 * 111.00382 * 187.25582 * 19 18 17 21 21 C 1.52997 * 109.47522 * 170.00035 * 20 19 18 22 22 C 1.53175 * 109.54337 * 174.99926 * 21 20 19 23 23 C 1.53092 * 109.16344 * 176.84735 * 22 21 20 24 24 O 1.42905 * 109.41215 * 302.38824 * 23 22 21 25 25 C 1.42905 * 114.09831 * 61.16158 * 24 23 22 26 26 C 1.53098 * 109.41155 * 298.83847 * 25 24 23 27 27 C 1.46903 * 111.27029 * 63.10253 * 19 18 17 28 28 C 1.47076 * 120.88337 * 0.02562 * 16 14 11 29 29 H 0.97001 * 120.00061 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.47397 * 59.99548 * 9 7 2 31 31 H 1.08996 * 109.47134 * 299.99121 * 9 7 2 32 32 H 1.09003 * 109.46921 * 60.00218 * 10 9 7 33 33 H 1.08996 * 109.46929 * 299.99904 * 10 9 7 34 34 H 1.00904 * 111.00366 * 60.00406 * 13 11 10 35 35 H 1.00904 * 111.00227 * 183.94963 * 13 11 10 36 36 H 1.08997 * 109.63390 * 111.49894 * 17 16 14 37 37 H 1.09003 * 109.62590 * 350.91300 * 17 16 14 38 38 H 1.08994 * 109.49241 * 186.20722 * 18 17 16 39 39 H 1.09005 * 109.49163 * 66.12947 * 18 17 16 40 40 H 1.09001 * 109.47125 * 49.99490 * 20 19 18 41 41 H 1.09010 * 109.46768 * 289.99999 * 20 19 18 42 42 H 1.08996 * 109.54194 * 54.82130 * 21 20 19 43 43 H 1.09004 * 109.52714 * 56.93754 * 22 21 20 44 44 H 1.09001 * 109.57654 * 296.78485 * 22 21 20 45 45 H 1.08997 * 109.48111 * 182.40965 * 23 22 21 46 46 H 1.09000 * 109.48212 * 62.37239 * 23 22 21 47 47 H 1.09000 * 109.47932 * 58.81878 * 25 24 23 48 48 H 1.08993 * 109.48024 * 178.86013 * 25 24 23 49 49 H 1.08996 * 109.52270 * 297.70307 * 26 25 24 50 50 H 1.08995 * 109.57012 * 177.54155 * 26 25 24 51 51 H 1.08994 * 109.48989 * 56.85920 * 27 19 18 52 52 H 1.09000 * 109.48871 * 176.93605 * 27 19 18 53 53 H 1.09003 * 109.63227 * 248.50566 * 28 16 14 54 54 H 1.09000 * 109.62770 * 9.08362 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8904 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4802 -4.9871 0.0012 12 1 0.7882 -5.0068 0.8432 13 7 0.7281 -5.1188 -1.2538 14 6 2.4548 -6.1298 0.1251 15 8 2.7863 -6.7536 -0.8608 16 7 2.9580 -6.4585 1.3313 17 6 3.9108 -7.5698 1.4745 18 6 3.4084 -8.5022 2.5820 19 7 3.1748 -7.7229 3.8051 20 6 2.8577 -8.6031 4.9377 21 6 2.8668 -7.7900 6.2337 22 6 2.4152 -8.6769 7.3981 23 6 2.5028 -7.8783 8.7013 24 8 3.8413 -7.4120 8.8836 25 6 4.3013 -6.5401 7.8491 26 6 4.2860 -7.2849 6.5116 27 6 2.1190 -6.7211 3.6052 28 6 2.5690 -5.7156 2.5395 29 1 -0.4850 0.8400 -0.0004 30 1 0.6246 -2.5570 -0.8896 31 1 0.6241 -2.5567 0.8903 32 1 2.8718 -3.6044 0.8906 33 1 2.8718 -3.6044 -0.8894 34 1 1.3477 -5.1034 -2.0500 35 1 0.1637 -5.9552 -1.2511 36 1 4.8922 -7.1786 1.7424 37 1 3.9764 -8.1191 0.5352 38 1 4.1563 -9.2705 2.7776 39 1 2.4770 -8.9725 2.2668 40 1 3.6026 -9.3963 5.0010 41 1 1.8708 -9.0423 4.7912 42 1 2.1889 -6.9421 6.1369 43 1 3.0627 -9.5514 7.4625 44 1 1.3860 -8.9970 7.2355 45 1 2.2234 -8.5176 9.5388 46 1 1.8246 -7.0264 8.6520 47 1 3.6466 -5.6707 7.7886 48 1 5.3175 -6.2154 8.0726 49 1 4.9713 -8.1312 6.5581 50 1 4.5948 -6.6094 5.7140 51 1 1.2056 -7.2162 3.2759 52 1 1.9319 -6.1980 4.5430 53 1 3.4216 -5.1462 2.9097 54 1 1.7474 -5.0388 2.3046 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424142088.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:51 Heat of formation + Delta-G solvation = -111.476973 kcal Electronic energy + Delta-G solvation = -30822.607207 eV Core-core repulsion = 26792.529606 eV Total energy + Delta-G solvation = -4030.077601 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.55575 -40.46054 -39.14803 -36.89559 -36.41350 -34.84476 -34.24557 -32.25418 -31.94031 -31.92367 -29.69814 -28.15653 -26.74356 -25.38816 -24.70586 -24.39497 -23.26004 -22.48183 -21.54408 -20.78471 -19.98724 -18.68226 -18.27974 -17.30593 -17.08636 -17.02333 -16.89539 -16.42772 -16.36132 -16.12223 -15.99232 -15.78104 -15.59092 -15.43520 -15.05962 -14.87087 -14.34874 -14.26635 -14.12747 -13.84971 -13.66515 -13.41238 -13.19189 -13.02822 -12.82966 -12.77258 -12.57663 -12.48322 -12.38138 -12.32110 -12.17833 -12.15212 -11.74761 -11.60756 -11.59744 -11.35463 -11.21290 -11.10588 -10.97862 -10.48572 -10.41643 -9.86522 -9.64619 -9.29236 -8.13066 -6.22899 1.41922 1.42835 1.45415 1.55611 1.90618 2.45300 2.78302 3.03958 3.20227 3.40400 3.61440 3.67886 3.83750 3.87608 3.96299 3.99013 4.00946 4.16536 4.18630 4.22654 4.27815 4.30068 4.37448 4.42816 4.52687 4.53413 4.68248 4.71590 4.72950 4.75842 4.79417 4.82033 4.86007 4.90919 4.92598 4.98705 5.01665 5.04635 5.22173 5.23463 5.33480 5.41921 5.47066 5.58248 5.84477 5.97225 5.98548 5.98860 6.07521 6.29671 6.31792 6.33098 6.47728 6.95375 7.01526 7.45223 8.98246 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010046 B = 0.002665 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2786.550106 B =10502.619428 C =12501.171723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.958 3.042 4 H -0.265 1.265 5 H -0.282 1.282 6 H -0.276 1.276 7 C -0.541 4.541 8 H 0.054 0.946 9 C 0.042 3.958 10 C -0.080 4.080 11 C 0.086 3.914 12 H 0.108 0.892 13 N -0.818 5.818 14 C 0.488 3.512 15 O -0.585 6.585 16 N -0.606 5.606 17 C 0.112 3.888 18 C 0.054 3.946 19 N -0.536 5.536 20 C 0.067 3.933 21 C -0.085 4.085 22 C -0.145 4.145 23 C 0.056 3.944 24 O -0.407 6.407 25 C 0.054 3.946 26 C -0.133 4.133 27 C 0.045 3.955 28 C 0.105 3.895 29 H 0.262 0.738 30 H 0.004 0.996 31 H -0.004 1.004 32 H 0.066 0.934 33 H 0.040 0.960 34 H 0.345 0.655 35 H 0.345 0.655 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.105 0.895 39 H 0.029 0.971 40 H 0.083 0.917 41 H 0.037 0.963 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.083 0.917 45 H 0.102 0.898 46 H 0.052 0.948 47 H 0.051 0.949 48 H 0.096 0.904 49 H 0.063 0.937 50 H 0.080 0.920 51 H 0.035 0.965 52 H 0.105 0.895 53 H 0.084 0.916 54 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.986 -21.019 16.706 27.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.783 3.217 4 H -0.189 1.189 5 H -0.208 1.208 6 H -0.202 1.202 7 C -0.579 4.579 8 H 0.072 0.928 9 C 0.005 3.995 10 C -0.118 4.118 11 C -0.029 4.029 12 H 0.126 0.874 13 N -0.347 5.347 14 C 0.275 3.725 15 O -0.465 6.465 16 N -0.338 5.338 17 C -0.011 4.011 18 C -0.075 4.075 19 N -0.261 5.261 20 C -0.060 4.060 21 C -0.104 4.104 22 C -0.183 4.183 23 C -0.021 4.021 24 O -0.327 6.327 25 C -0.022 4.022 26 C -0.170 4.170 27 C -0.084 4.084 28 C -0.018 4.018 29 H 0.071 0.929 30 H 0.023 0.977 31 H 0.015 0.985 32 H 0.085 0.915 33 H 0.058 0.942 34 H 0.158 0.842 35 H 0.158 0.842 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.123 0.877 39 H 0.048 0.952 40 H 0.101 0.899 41 H 0.055 0.945 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.101 0.899 45 H 0.120 0.880 46 H 0.071 0.929 47 H 0.069 0.931 48 H 0.114 0.886 49 H 0.082 0.918 50 H 0.099 0.901 51 H 0.053 0.947 52 H 0.123 0.877 53 H 0.102 0.898 54 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.203 -20.355 16.660 27.025 hybrid contribution -0.180 -0.221 -0.860 0.905 sum 6.023 -20.576 15.800 26.632 Atomic orbital electron populations 1.70103 1.07567 1.27416 1.51825 1.25866 0.95676 1.02909 0.95022 0.85514 0.79092 0.79415 0.77699 1.18872 1.20812 1.20200 1.21728 0.93284 0.92673 1.50203 0.92751 1.18805 0.93751 0.91170 0.95799 1.21385 0.97744 0.92039 1.00671 1.21643 0.93729 0.92292 0.95277 0.87437 1.59006 1.27207 1.45172 1.03287 1.22396 0.82001 0.85437 0.82674 1.90618 1.62559 1.55495 1.37860 1.48330 1.44589 1.33642 1.07283 1.21758 0.92480 0.87796 0.99018 1.22383 1.00637 0.95292 0.89191 1.61911 1.43501 1.16058 1.04594 1.22127 0.99994 0.94651 0.89233 1.21219 0.97351 0.98306 0.93495 1.22170 1.02712 0.98966 0.94492 1.22695 0.83233 0.97936 0.98201 1.87898 1.31011 1.66243 1.47535 1.22721 1.00365 0.91835 0.87303 1.22028 0.96710 1.01069 0.97231 1.22513 0.92305 0.94088 0.99455 1.22095 1.01861 0.94249 0.83583 0.92942 0.97716 0.98524 0.91526 0.94166 0.84152 0.84163 0.90272 0.90252 0.87651 0.95245 0.89894 0.94514 0.90910 0.91088 0.89851 0.87986 0.92930 0.93081 0.88599 0.91803 0.90125 0.94716 0.87689 0.89767 0.89017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.04 13.29 21.45 0.28 -55.75 16 2 C 0.00 0.18 5.46 84.66 0.46 0.64 16 3 Si 0.96 44.13 29.54 68.60 2.03 46.15 16 4 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 6 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 7 C -0.54 -30.41 9.11 25.60 0.23 -30.18 16 8 H 0.05 2.97 7.74 -2.91 -0.02 2.94 16 9 C 0.04 2.15 4.86 29.85 0.15 2.30 16 10 C -0.08 -3.22 4.58 30.60 0.14 -3.08 16 11 C 0.09 2.89 2.30 44.17 0.10 2.99 16 12 H 0.11 3.36 6.51 -2.38 -0.02 3.35 16 13 N -0.82 -28.05 8.44 -171.80 -1.45 -29.50 16 14 C 0.49 15.45 6.95 87.66 0.61 16.06 16 15 O -0.58 -21.72 15.70 -3.04 -0.05 -21.77 16 16 N -0.61 -15.25 3.01 -817.87 -2.46 -17.72 16 17 C 0.11 2.38 6.60 86.35 0.57 2.95 16 18 C 0.05 0.85 5.62 86.39 0.49 1.34 16 19 N -0.54 -7.97 4.17 -895.18 -3.73 -11.71 16 20 C 0.07 0.79 4.36 86.30 0.38 1.17 16 21 C -0.08 -0.98 2.20 -10.68 -0.02 -1.01 16 22 C -0.15 -1.49 5.42 30.68 0.17 -1.32 16 23 C 0.06 0.68 6.84 72.01 0.49 1.17 16 24 O -0.41 -7.06 10.77 -148.98 -1.60 -8.66 16 25 C 0.05 0.78 6.84 72.01 0.49 1.27 16 26 C -0.13 -1.74 5.28 30.69 0.16 -1.58 16 27 C 0.04 0.74 5.47 86.39 0.47 1.21 16 28 C 0.10 2.22 5.73 86.36 0.49 2.72 16 29 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 30 H 0.00 0.25 7.75 -2.39 -0.02 0.23 16 31 H 0.00 -0.20 8.14 -2.39 -0.02 -0.21 16 32 H 0.07 2.49 7.25 -2.39 -0.02 2.47 16 33 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.34 12.16 8.58 -89.69 -0.77 11.39 16 35 H 0.35 10.20 9.06 -89.69 -0.81 9.39 16 36 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.08 1.92 7.06 -2.39 -0.02 1.90 16 38 H 0.11 1.27 7.99 -2.39 -0.02 1.26 16 39 H 0.03 0.52 8.14 -2.38 -0.02 0.50 16 40 H 0.08 0.90 7.97 -2.39 -0.02 0.88 16 41 H 0.04 0.44 8.13 -2.38 -0.02 0.42 16 42 H 0.07 0.90 6.19 -2.39 -0.01 0.88 16 43 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 47 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 49 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 50 H 0.08 1.16 7.87 -2.39 -0.02 1.14 16 51 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 52 H 0.11 1.46 6.07 -2.39 -0.01 1.45 16 53 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 54 H 0.09 2.12 5.33 -2.39 -0.01 2.10 16 Total: -1.00 -69.18 411.50 -2.30 -71.48 By element: Atomic # 1 Polarization: 31.51 SS G_CDS: -0.69 Total: 30.82 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: 5.38 Total: -3.35 kcal Atomic # 7 Polarization: -107.32 SS G_CDS: -7.36 Total: -114.67 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -1.65 Total: -30.43 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -69.18 -2.30 -71.48 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424142088.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.996 kcal (2) G-P(sol) polarization free energy of solvation -69.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds