Wall clock time and date at job start Sat Apr 11 2020 05:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00478 * 2 1 4 4 C 1.52991 * 109.47403 * 179.97438 * 3 2 1 5 5 O 1.42904 * 109.47237 * 65.00306 * 4 3 2 6 6 C 1.42904 * 114.00231 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.46923 * 209.99672 * 6 5 4 8 8 C 1.52994 * 109.46943 * 179.97438 * 7 6 5 9 9 C 1.53003 * 109.46996 * 60.00381 * 8 7 6 10 10 C 1.50701 * 109.46947 * 59.99970 * 9 8 7 11 11 O 1.21290 * 119.99828 * 250.97237 * 10 9 8 12 12 N 1.34772 * 120.00148 * 70.97769 * 10 9 8 13 13 C 1.46927 * 120.62899 * 175.62338 * 12 10 9 14 14 C 1.53185 * 108.89394 * 233.55533 * 13 12 10 15 15 C 1.53069 * 109.29612 * 305.58049 * 14 13 12 16 16 C 1.50703 * 109.44581 * 181.23474 * 15 14 13 17 17 H 1.08000 * 120.00306 * 239.80291 * 16 15 14 18 18 C 1.37878 * 120.00012 * 59.79289 * 16 15 14 19 19 N 1.31524 * 119.99983 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00281 * 180.02562 * 18 16 15 21 21 H 1.48490 * 109.47276 * 89.99799 * 20 18 16 22 22 H 1.48504 * 109.46866 * 210.00121 * 20 18 16 23 23 H 1.48505 * 109.46618 * 329.99537 * 20 18 16 24 24 C 1.53040 * 109.66134 * 61.15185 * 15 14 13 25 25 C 1.46922 * 120.63085 * 355.64136 * 12 10 9 26 26 C 1.53002 * 109.47175 * 299.99911 * 9 8 7 27 27 C 1.52993 * 109.46997 * 89.99758 * 6 5 4 28 28 H 1.08993 * 109.47254 * 300.00079 * 1 2 3 29 29 H 1.09001 * 109.46728 * 59.99947 * 1 2 3 30 30 H 1.09002 * 109.47562 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46717 * 59.99351 * 3 2 1 32 32 H 1.09002 * 109.47111 * 300.00439 * 3 2 1 33 33 H 1.08997 * 109.47145 * 305.00471 * 4 3 2 34 34 H 1.09002 * 109.47413 * 184.99902 * 4 3 2 35 35 H 1.08998 * 109.46852 * 329.99735 * 6 5 4 36 36 H 1.09005 * 109.46774 * 60.00329 * 7 6 5 37 37 H 1.08998 * 109.47249 * 300.00492 * 7 6 5 38 38 H 1.08998 * 109.47907 * 300.00527 * 8 7 6 39 39 H 1.09003 * 109.47300 * 179.97438 * 8 7 6 40 40 H 1.08998 * 109.47340 * 179.97438 * 9 8 7 41 41 H 1.08994 * 109.58952 * 353.41773 * 13 12 10 42 42 H 1.09005 * 109.58736 * 113.69923 * 13 12 10 43 43 H 1.09004 * 109.49824 * 65.39101 * 14 13 12 44 44 H 1.09003 * 109.50316 * 185.48501 * 14 13 12 45 45 H 1.09005 * 109.34838 * 301.12955 * 15 14 13 46 46 H 0.96994 * 120.00003 * 179.97438 * 19 18 16 47 47 H 1.08996 * 109.50247 * 178.74807 * 24 15 14 48 48 H 1.09004 * 109.52193 * 58.66538 * 24 15 14 49 49 H 1.08995 * 109.58678 * 246.15895 * 25 12 10 50 50 H 1.09002 * 109.58535 * 6.44595 * 25 12 10 51 51 H 1.08996 * 109.47439 * 179.97438 * 26 9 8 52 52 H 1.08998 * 109.47053 * 300.00113 * 26 9 8 53 53 H 1.08998 * 109.47423 * 300.00297 * 27 6 5 54 54 H 1.08998 * 109.47338 * 60.00275 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 8 3.9659 0.5791 -1.2202 6 6 5.3822 0.4185 -1.3216 7 6 5.8003 0.4959 -2.7914 8 6 7.3167 0.3246 -2.8999 9 6 7.7186 -1.0358 -2.3264 10 6 7.0325 -2.1305 -3.1022 11 8 6.1380 -2.7687 -2.5886 12 7 7.4129 -2.4004 -4.3666 13 6 6.8205 -3.5258 -5.1025 14 6 7.9461 -4.4197 -5.6320 15 6 8.9216 -3.5722 -6.4525 16 6 10.0140 -4.4539 -7.0004 17 1 11.0445 -4.2620 -6.7401 18 6 9.6980 -5.5058 -7.8339 19 7 8.4432 -5.7394 -8.1513 20 14 11.0520 -6.5991 -8.5126 21 1 11.2869 -7.7318 -7.5815 22 1 10.6444 -7.1257 -9.8399 23 1 12.3012 -5.8088 -8.6558 24 6 9.5378 -2.4902 -5.5628 25 6 8.4281 -1.5753 -5.0353 26 6 7.3005 -1.1132 -0.8566 27 6 5.7835 -0.9420 -0.7482 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6886 1.8463 0.8900 32 1 1.6887 1.8464 -0.8900 33 1 3.8507 0.5683 0.8426 34 1 3.9785 2.1764 0.0902 35 1 5.8787 1.2101 -0.7604 36 1 5.5143 1.4653 -3.1998 37 1 5.3036 -0.2956 -3.3525 38 1 7.8130 1.1163 -2.3388 39 1 7.6145 0.3793 -3.9470 40 1 8.7989 -1.1581 -2.4041 41 1 6.1796 -4.1019 -4.4351 42 1 6.2314 -3.1467 -5.9376 43 1 8.4763 -4.8721 -4.7939 44 1 7.5233 -5.2031 -6.2610 45 1 8.3861 -3.1023 -7.2775 46 1 8.2210 -6.4791 -8.7379 47 1 10.2484 -1.9024 -6.1439 48 1 10.0529 -2.9582 -4.7239 49 1 7.9722 -1.0373 -5.8664 50 1 8.8461 -0.8628 -4.3241 51 1 7.5864 -2.0825 -0.4481 52 1 7.7967 -0.3214 -0.2955 53 1 5.4856 -0.9972 0.2988 54 1 5.2870 -1.7336 -1.3094 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000526012822.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:51:23 Heat of formation + Delta-G solvation = -162.380892 kcal Electronic energy + Delta-G solvation = -31207.176312 eV Core-core repulsion = 27142.598601 eV Total energy + Delta-G solvation = -4064.577712 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.224 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.79955 -39.80963 -38.87666 -38.21701 -36.83440 -35.38900 -33.04381 -32.26743 -31.79211 -31.28874 -30.00788 -28.01548 -27.15961 -25.25642 -24.26748 -23.87911 -23.27913 -23.13305 -21.90619 -20.86227 -19.48405 -18.51886 -18.04075 -17.68276 -17.56646 -17.09206 -16.56439 -16.51176 -16.33007 -16.24863 -15.66511 -15.35076 -15.01113 -14.96692 -14.88736 -14.47838 -14.32180 -14.15156 -14.03651 -13.77512 -13.39577 -13.19729 -13.09549 -13.03339 -12.94508 -12.83748 -12.75665 -12.46587 -12.38410 -12.17474 -12.15184 -11.93789 -11.87988 -11.71103 -11.43943 -11.40409 -11.26944 -11.00129 -10.81064 -10.64848 -10.43305 -10.28894 -10.17904 -9.46423 -8.07445 -6.21746 1.40951 1.42459 1.51644 1.74964 2.16341 2.43602 2.73374 2.88022 3.18991 3.54885 3.73131 3.84313 4.01106 4.06387 4.17193 4.20461 4.27646 4.29843 4.32092 4.37541 4.39431 4.44725 4.47732 4.49423 4.53343 4.56664 4.58312 4.61254 4.62841 4.70801 4.78428 4.83025 4.83666 4.90905 4.94420 4.99510 5.08340 5.11992 5.18948 5.24844 5.27562 5.29798 5.36813 5.46428 5.55623 5.65083 5.72350 5.98305 6.12427 6.22420 6.38082 6.44449 6.64575 6.90767 7.33963 7.46625 8.95876 Molecular weight = 339.22amu Principal moments of inertia in cm(-1) A = 0.021951 B = 0.002274 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.244335 B =12312.006938 C =12981.331343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.058 3.942 4 C 0.056 3.944 5 O -0.404 6.404 6 C 0.097 3.903 7 C -0.117 4.117 8 C -0.105 4.105 9 C -0.107 4.107 10 C 0.509 3.491 11 O -0.582 6.582 12 N -0.605 5.605 13 C 0.122 3.878 14 C -0.109 4.109 15 C 0.045 3.955 16 C -0.530 4.530 17 H 0.055 0.945 18 C 0.010 3.990 19 N -0.918 5.918 20 Si 0.951 3.049 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.265 1.265 24 C -0.117 4.117 25 C 0.108 3.892 26 C -0.089 4.089 27 C -0.159 4.159 28 H 0.059 0.941 29 H 0.046 0.954 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.057 0.943 33 H 0.051 0.949 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.030 0.970 38 H 0.115 0.885 39 H 0.086 0.914 40 H 0.119 0.881 41 H 0.060 0.940 42 H 0.053 0.947 43 H 0.021 0.979 44 H 0.069 0.931 45 H 0.000 1.000 46 H 0.259 0.741 47 H 0.075 0.925 48 H 0.049 0.951 49 H 0.071 0.929 50 H 0.120 0.880 51 H 0.052 0.948 52 H 0.103 0.897 53 H 0.055 0.945 54 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.541 20.610 17.347 27.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C -0.018 4.018 4 C -0.020 4.020 5 O -0.324 6.324 6 C 0.040 3.960 7 C -0.154 4.154 8 C -0.142 4.142 9 C -0.128 4.128 10 C 0.300 3.700 11 O -0.464 6.464 12 N -0.337 5.337 13 C -0.001 4.001 14 C -0.148 4.148 15 C 0.026 3.974 16 C -0.568 4.568 17 H 0.074 0.926 18 C -0.189 4.189 19 N -0.558 5.558 20 Si 0.778 3.222 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.189 1.189 24 C -0.155 4.155 25 C -0.014 4.014 26 C -0.127 4.127 27 C -0.196 4.196 28 H 0.078 0.922 29 H 0.064 0.936 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.110 0.890 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.049 0.951 38 H 0.133 0.867 39 H 0.104 0.896 40 H 0.137 0.863 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.040 0.960 44 H 0.087 0.913 45 H 0.018 0.982 46 H 0.068 0.932 47 H 0.094 0.906 48 H 0.068 0.932 49 H 0.089 0.911 50 H 0.137 0.863 51 H 0.071 0.929 52 H 0.121 0.879 53 H 0.074 0.926 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.123 19.943 17.343 27.372 hybrid contribution 0.120 -1.398 -0.701 1.568 sum -7.003 18.545 16.642 25.883 Atomic orbital electron populations 1.22887 0.79748 1.03417 1.00941 1.87956 1.21339 1.29104 1.95595 1.22762 0.92326 0.84790 1.01948 1.22766 0.93746 0.98308 0.87168 1.87980 1.23320 1.82382 1.38755 1.22148 0.80646 0.96478 0.96710 1.21585 0.96544 1.02008 0.95310 1.21690 0.94528 0.94937 1.03061 1.21496 1.01742 0.93774 0.95760 1.21413 0.82662 0.84911 0.81035 1.90548 1.32726 1.53721 1.69361 1.48305 1.40951 1.30696 1.13743 1.21439 0.95878 0.88173 0.94656 1.21758 0.96260 0.99109 0.97689 1.18618 0.93458 0.92719 0.92597 1.21609 0.93836 1.13263 1.28081 0.92629 1.25758 0.97337 0.98987 0.96800 1.69998 1.18281 1.30776 1.36701 0.85655 0.79991 0.79091 0.77505 1.20673 1.21175 1.18914 1.21890 0.97356 0.97280 0.99023 1.22106 0.88380 0.92956 0.97937 1.21291 0.95128 1.02627 0.93619 1.22317 0.97270 0.99271 1.00761 0.92201 0.93574 0.89585 0.89173 0.92509 0.93057 0.88969 0.89562 0.89838 0.95076 0.86678 0.89565 0.86277 0.92127 0.92873 0.96006 0.91280 0.98171 0.93161 0.90648 0.93198 0.91100 0.86259 0.92920 0.87858 0.92640 0.91341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 113.37 1.25 1.67 16 2 O -0.42 -10.09 10.67 -144.35 -1.54 -11.63 16 3 C 0.06 0.99 6.32 71.98 0.45 1.45 16 4 C 0.06 1.02 6.13 71.98 0.44 1.46 16 5 O -0.40 -10.54 9.95 -144.35 -1.44 -11.98 16 6 C 0.10 2.14 2.61 30.59 0.08 2.22 16 7 C -0.12 -2.60 5.35 30.59 0.16 -2.44 16 8 C -0.10 -1.77 5.07 30.59 0.15 -1.61 16 9 C -0.11 -2.38 2.16 -11.54 -0.02 -2.40 16 10 C 0.51 17.20 5.59 87.66 0.49 17.69 16 11 O -0.58 -24.41 12.76 -3.06 -0.04 -24.45 16 12 N -0.61 -21.39 2.97 -818.92 -2.44 -23.82 16 13 C 0.12 5.18 6.41 86.36 0.55 5.73 16 14 C -0.11 -5.33 5.16 30.68 0.16 -5.17 16 15 C 0.04 2.15 2.06 -11.50 -0.02 2.13 16 16 C -0.53 -28.48 8.56 25.60 0.22 -28.26 16 17 H 0.06 2.90 7.74 -2.91 -0.02 2.88 16 18 C 0.01 0.52 5.30 84.65 0.45 0.97 16 19 N -0.92 -53.09 11.30 21.45 0.24 -52.85 16 20 Si 0.95 43.49 29.54 68.60 2.03 45.52 16 21 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 22 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 23 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 24 C -0.12 -4.29 5.30 30.67 0.16 -4.13 16 25 C 0.11 3.14 5.23 86.36 0.45 3.59 16 26 C -0.09 -1.91 5.18 30.61 0.16 -1.75 16 27 C -0.16 -4.17 5.25 30.61 0.16 -4.01 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.05 0.95 7.87 -2.39 -0.02 0.93 16 34 H 0.09 1.04 8.09 -2.39 -0.02 1.02 16 35 H 0.09 1.31 7.79 -2.39 -0.02 1.29 16 36 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 37 H 0.03 0.96 7.22 -2.39 -0.02 0.94 16 38 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.09 1.38 5.77 -2.39 -0.01 1.37 16 40 H 0.12 2.16 7.31 -2.39 -0.02 2.14 16 41 H 0.06 2.72 7.03 -2.39 -0.02 2.70 16 42 H 0.05 2.26 8.14 -2.38 -0.02 2.24 16 43 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16 44 H 0.07 3.83 6.03 -2.39 -0.01 3.81 16 45 H 0.00 0.01 8.14 -2.38 -0.02 -0.01 16 46 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 47 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 48 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 49 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 50 H 0.12 2.42 4.61 -2.39 -0.01 2.41 16 51 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 52 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 53 H 0.05 1.38 7.87 -2.39 -0.02 1.36 16 54 H 0.07 2.51 5.14 -2.39 -0.01 2.50 16 Total: -1.00 -73.81 404.11 2.97 -70.83 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: 0.86 Total: 21.27 kcal Atomic # 6 Polarization: -18.17 SS G_CDS: 5.30 Total: -12.88 kcal Atomic # 7 Polarization: -74.48 SS G_CDS: -2.19 Total: -76.67 kcal Atomic # 8 Polarization: -45.05 SS G_CDS: -3.02 Total: -48.07 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -73.81 2.97 -70.83 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526012822.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.549 kcal (2) G-P(sol) polarization free energy of solvation -73.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds