Wall clock time and date at job start Sat Apr 11 2020 05:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47299 * 2 1 4 4 C 1.52998 * 109.47106 * 240.00025 * 2 1 3 5 5 N 1.46898 * 109.47359 * 184.67828 * 4 2 1 6 6 C 1.46849 * 110.99767 * 293.88414 * 5 4 2 7 7 C 1.53043 * 109.51924 * 174.15996 * 6 5 4 8 8 C 1.53114 * 109.28082 * 59.18281 * 7 6 5 9 9 C 1.52997 * 109.52394 * 182.37573 * 8 7 6 10 10 C 1.53119 * 109.15734 * 302.34294 * 8 7 6 11 11 C 1.46849 * 111.00259 * 169.67407 * 5 4 2 12 12 N 1.46505 * 109.46932 * 120.00450 * 2 1 3 13 13 C 1.34775 * 119.99620 * 279.08903 * 12 2 1 14 14 O 1.21582 * 120.00309 * 0.02562 * 13 12 2 15 15 N 1.34780 * 119.99690 * 180.02562 * 13 12 2 16 16 C 1.47421 * 125.65044 * 0.02898 * 15 13 12 17 17 C 1.54908 * 104.83336 * 204.09471 * 16 15 13 18 18 C 1.55166 * 101.57815 * 322.98314 * 17 16 15 19 19 O 1.42895 * 110.72232 * 277.14386 * 18 17 16 20 20 C 1.50701 * 110.71879 * 154.04323 * 18 17 16 21 21 H 1.08000 * 120.00172 * 0.02562 * 20 18 17 22 22 C 1.37877 * 119.99817 * 180.02562 * 20 18 17 23 23 N 1.31516 * 119.99874 * 0.02562 * 22 20 18 24 24 Si 1.86800 * 119.99787 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47274 * 90.00196 * 24 22 20 26 26 H 1.48497 * 109.47163 * 209.99769 * 24 22 20 27 27 H 1.48499 * 109.47247 * 330.00142 * 24 22 20 28 28 C 1.47018 * 125.64571 * 179.71484 * 15 13 12 29 29 H 1.08995 * 109.47004 * 59.99807 * 1 2 3 30 30 H 1.08999 * 109.46816 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47030 * 299.99749 * 1 2 3 32 32 H 1.09002 * 109.47228 * 64.67600 * 4 2 1 33 33 H 1.09006 * 109.47227 * 304.68302 * 4 2 1 34 34 H 1.08998 * 109.46450 * 54.14865 * 6 5 4 35 35 H 1.08991 * 109.45611 * 294.16567 * 6 5 4 36 36 H 1.08996 * 109.50474 * 299.23604 * 7 6 5 37 37 H 1.09006 * 109.49739 * 179.12483 * 7 6 5 38 38 H 1.09000 * 109.52340 * 62.24736 * 8 7 6 39 39 H 1.08999 * 109.46930 * 59.87040 * 9 8 7 40 40 H 1.09001 * 109.47282 * 179.86813 * 9 8 7 41 41 H 1.08994 * 109.46933 * 299.87277 * 9 8 7 42 42 H 1.09003 * 109.50308 * 177.59329 * 10 8 7 43 43 H 1.09003 * 109.50318 * 297.71160 * 10 8 7 44 44 H 1.09000 * 109.46144 * 305.86082 * 11 5 4 45 45 H 1.09003 * 109.45823 * 65.82445 * 11 5 4 46 46 H 0.96992 * 120.00202 * 99.09402 * 12 2 1 47 47 H 1.09001 * 110.36324 * 322.92503 * 16 15 13 48 48 H 1.08995 * 110.37135 * 85.24561 * 16 15 13 49 49 H 1.08991 * 111.01129 * 81.05667 * 17 16 15 50 50 H 1.08996 * 111.00419 * 204.87958 * 17 16 15 51 51 H 0.96692 * 113.99900 * 180.02562 * 19 18 17 52 52 H 0.97001 * 119.99345 * 180.02562 * 23 22 20 53 53 H 1.09002 * 109.88626 * 298.39862 * 28 15 13 54 54 H 1.09001 * 109.88625 * 59.56561 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 3.5047 -0.8199 -1.1941 6 6 4.1251 0.5082 -1.2815 7 6 5.6363 0.3812 -1.0753 8 6 6.2167 -0.5453 -2.1472 9 6 7.7178 -0.7235 -1.9108 10 6 5.5196 -1.9062 -2.0662 11 6 4.0119 -1.7130 -2.2437 12 7 2.0183 -0.6907 1.1962 13 6 2.0691 -0.0410 2.3759 14 8 1.7092 1.1181 2.4476 15 7 2.5188 -0.6763 3.4762 16 6 2.9847 -2.0739 3.5314 17 6 2.7925 -2.4980 5.0088 18 6 3.1634 -1.1912 5.7587 19 8 4.5799 -1.0801 5.9106 20 6 2.4791 -1.1337 7.1002 21 1 1.8345 -1.9419 7.4127 22 6 2.6759 -0.0492 7.9285 23 7 3.4605 0.9353 7.5477 24 14 1.8282 0.0218 9.5916 25 1 2.6988 -0.6056 10.6181 26 1 1.5736 1.4383 9.9573 27 1 0.5385 -0.7110 9.5215 28 6 2.6320 -0.0883 4.8189 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.7467 -0.1613 -2.1373 33 1 1.6098 -1.7219 -1.2922 34 1 3.7067 1.1560 -0.5112 35 1 3.9275 0.9374 -2.2637 36 1 5.8351 -0.0352 -0.0878 37 1 6.0984 1.3652 -1.1556 38 1 6.0523 -0.1099 -3.1329 39 1 7.8812 -1.1588 -0.9250 40 1 8.1297 -1.3850 -2.6730 41 1 8.2119 0.2465 -1.9660 42 1 5.8983 -2.5566 -2.8546 43 1 5.7166 -2.3587 -1.0943 44 1 3.5110 -2.6785 -2.1723 45 1 3.8147 -1.2731 -3.2213 46 1 2.3052 -1.6155 1.1391 47 1 2.3812 -2.7010 2.8752 48 1 4.0368 -2.1343 3.2531 49 1 1.7576 -2.7795 5.2031 50 1 3.4720 -3.3077 5.2744 51 1 4.8642 -0.2803 6.3737 52 1 3.5992 1.6980 8.1307 53 1 3.3273 0.7510 4.7987 54 1 1.6528 0.2471 5.1606 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596846239.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:11 Heat of formation + Delta-G solvation = -108.828704 kcal Electronic energy + Delta-G solvation = -31674.175148 eV Core-core repulsion = 27644.212385 eV Total energy + Delta-G solvation = -4029.962763 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.31531 -40.20322 -39.12824 -37.09362 -36.04041 -34.78995 -34.15754 -32.39494 -31.75329 -31.02044 -29.50446 -29.20910 -26.95019 -25.99851 -24.38781 -24.16458 -22.87663 -21.80702 -21.30870 -20.91787 -20.50832 -19.22536 -18.81229 -17.44940 -17.09904 -17.02103 -16.58382 -16.17900 -15.98837 -15.55913 -15.44927 -15.30232 -14.89019 -14.88418 -14.74116 -14.70878 -14.24369 -13.98173 -13.82976 -13.47349 -13.45120 -13.29117 -13.23967 -13.03417 -12.84536 -12.72867 -12.65540 -12.53481 -12.47560 -12.29078 -12.26404 -12.10805 -12.07010 -11.85117 -11.53399 -11.21999 -11.16093 -11.14248 -11.04910 -10.62572 -10.28044 -10.09524 -9.31497 -9.22089 -8.25914 -6.41921 1.41582 1.43341 1.53272 1.77103 2.26292 2.38343 2.88532 3.00455 3.20679 3.72545 3.84315 3.86306 3.88745 3.96006 4.11793 4.17550 4.22940 4.32387 4.35407 4.41065 4.42214 4.51439 4.58427 4.63009 4.65891 4.72247 4.74272 4.77171 4.79042 4.80431 4.88264 4.95560 5.02677 5.05021 5.07414 5.15767 5.16093 5.24676 5.28138 5.29835 5.32506 5.34659 5.39692 5.51939 5.56394 5.70533 5.77261 6.04156 6.14334 6.22564 6.29116 6.65074 7.18600 7.30164 7.39668 7.69940 8.80317 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014708 B = 0.002910 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.313203 B = 9619.538080 C =10534.301901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.164 3.836 3 H 0.053 0.947 4 C 0.058 3.942 5 N -0.546 5.546 6 C 0.060 3.940 7 C -0.111 4.111 8 C -0.088 4.088 9 C -0.145 4.145 10 C -0.109 4.109 11 C 0.058 3.942 12 N -0.707 5.707 13 C 0.711 3.289 14 O -0.649 6.649 15 N -0.636 5.636 16 C 0.114 3.886 17 C -0.110 4.110 18 C 0.234 3.766 19 O -0.590 6.590 20 C -0.556 4.556 21 H 0.069 0.931 22 C 0.023 3.977 23 N -0.918 5.918 24 Si 0.965 3.035 25 H -0.271 1.271 26 H -0.286 1.286 27 H -0.267 1.267 28 C 0.142 3.858 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.029 0.971 32 H 0.064 0.936 33 H 0.103 0.897 34 H 0.049 0.951 35 H 0.041 0.959 36 H 0.047 0.953 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.046 0.954 40 H 0.066 0.934 41 H 0.052 0.948 42 H 0.082 0.918 43 H 0.058 0.942 44 H 0.088 0.912 45 H 0.039 0.961 46 H 0.407 0.593 47 H 0.099 0.901 48 H 0.064 0.936 49 H 0.083 0.917 50 H 0.089 0.911 51 H 0.377 0.623 52 H 0.270 0.730 53 H 0.020 0.980 54 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.233 -8.064 -23.438 24.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.058 3.942 3 H 0.071 0.929 4 C -0.070 4.070 5 N -0.271 5.271 6 C -0.068 4.068 7 C -0.149 4.149 8 C -0.107 4.107 9 C -0.202 4.202 10 C -0.147 4.147 11 C -0.069 4.069 12 N -0.363 5.363 13 C 0.413 3.587 14 O -0.532 6.532 15 N -0.372 5.372 16 C -0.008 4.008 17 C -0.148 4.148 18 C 0.194 3.806 19 O -0.399 6.399 20 C -0.595 4.595 21 H 0.087 0.913 22 C -0.177 4.177 23 N -0.558 5.558 24 Si 0.790 3.210 25 H -0.196 1.196 26 H -0.212 1.212 27 H -0.191 1.191 28 C 0.018 3.982 29 H 0.103 0.897 30 H 0.093 0.907 31 H 0.048 0.952 32 H 0.082 0.918 33 H 0.121 0.879 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.065 0.935 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.101 0.899 43 H 0.077 0.923 44 H 0.107 0.893 45 H 0.057 0.943 46 H 0.244 0.756 47 H 0.117 0.883 48 H 0.083 0.917 49 H 0.101 0.899 50 H 0.107 0.893 51 H 0.228 0.772 52 H 0.080 0.920 53 H 0.039 0.961 54 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 1.142 -7.811 -23.304 24.605 hybrid contribution -0.336 1.496 1.004 1.833 sum 0.807 -6.315 -22.300 23.191 Atomic orbital electron populations 1.22110 0.94524 1.02953 1.01947 1.20866 0.93944 0.95937 0.83445 0.92926 1.22371 0.87543 1.02134 0.94975 1.61821 1.05170 1.11351 1.48774 1.21997 0.95114 0.90321 0.99406 1.21609 0.94324 0.99715 0.99220 1.21147 0.95340 0.95923 0.98290 1.21794 0.95032 1.01744 1.01657 1.21635 0.94066 0.96562 1.02410 1.22133 0.95860 0.97001 0.91876 1.44793 1.69735 1.16181 1.05619 1.15757 0.78338 0.83858 0.80709 1.90823 1.58416 1.18285 1.85710 1.47829 1.66854 1.14587 1.07965 1.22294 0.99507 0.81043 0.97975 1.22722 1.01960 0.97087 0.93054 1.19705 0.79027 0.90401 0.91487 1.86055 1.24225 1.48609 1.80986 1.21866 1.29550 1.05762 1.02273 0.91330 1.25852 0.95208 0.94550 1.02090 1.69699 1.38211 1.09297 1.38583 0.85441 0.79052 0.77158 0.79311 1.19636 1.21181 1.19148 1.22311 0.98141 0.97300 0.80472 0.89695 0.90724 0.95162 0.91764 0.87873 0.93266 0.94091 0.93392 0.91842 0.90957 0.93511 0.91508 0.92844 0.89928 0.92320 0.89316 0.94268 0.75595 0.88303 0.91738 0.89860 0.89256 0.77208 0.92018 0.96130 0.95449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.46 9.41 71.98 0.68 -2.78 16 2 C 0.16 3.98 2.32 44.99 0.10 4.09 16 3 H 0.05 1.61 6.23 -2.39 -0.01 1.60 16 4 C 0.06 0.93 4.49 86.30 0.39 1.32 16 5 N -0.55 -9.98 4.39 -896.35 -3.93 -13.92 16 6 C 0.06 1.26 5.29 86.33 0.46 1.72 16 7 C -0.11 -2.31 5.38 30.65 0.16 -2.15 16 8 C -0.09 -1.39 2.79 -10.72 -0.03 -1.42 16 9 C -0.14 -2.18 9.20 71.98 0.66 -1.51 16 10 C -0.11 -1.54 5.38 30.65 0.16 -1.38 16 11 C 0.06 0.79 5.46 86.32 0.47 1.26 16 12 N -0.71 -20.74 4.81 -457.81 -2.20 -22.94 16 13 C 0.71 29.65 8.40 179.05 1.50 31.15 16 14 O -0.65 -33.05 16.15 -3.97 -0.06 -33.12 16 15 N -0.64 -27.17 3.33 -829.75 -2.76 -29.93 16 16 C 0.11 3.87 6.56 86.86 0.57 4.44 16 17 C -0.11 -4.30 6.23 31.99 0.20 -4.10 16 18 C 0.23 11.69 0.86 -10.34 -0.01 11.68 16 19 O -0.59 -30.96 13.07 -148.98 -1.95 -32.91 16 20 C -0.56 -29.78 8.12 25.60 0.21 -29.58 16 21 H 0.07 3.55 7.76 -2.91 -0.02 3.52 16 22 C 0.02 1.25 5.28 84.65 0.45 1.70 16 23 N -0.92 -51.30 10.97 21.45 0.24 -51.06 16 24 Si 0.97 42.83 29.54 68.60 2.03 44.85 16 25 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 26 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 27 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 28 C 0.14 7.39 5.54 86.73 0.48 7.87 16 29 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.03 0.90 7.90 -2.39 -0.02 0.88 16 32 H 0.06 0.86 8.12 -2.39 -0.02 0.84 16 33 H 0.10 1.24 7.98 -2.38 -0.02 1.22 16 34 H 0.05 1.34 6.32 -2.39 -0.02 1.33 16 35 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 38 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.09 0.96 8.01 -2.39 -0.02 0.94 16 45 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 46 H 0.41 9.98 7.04 -92.71 -0.65 9.32 16 47 H 0.10 2.51 7.30 -2.39 -0.02 2.49 16 48 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 49 H 0.08 3.09 8.03 -2.39 -0.02 3.07 16 50 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 51 H 0.38 20.89 6.98 -74.06 -0.52 20.37 16 52 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 53 H 0.02 1.19 8.07 -2.39 -0.02 1.17 16 54 H 0.03 1.56 7.82 -2.39 -0.02 1.55 16 Total: -1.00 -68.93 414.15 -2.48 -71.41 By element: Atomic # 1 Polarization: 45.60 SS G_CDS: -0.30 Total: 45.30 kcal Atomic # 6 Polarization: 15.85 SS G_CDS: 6.46 Total: 22.31 kcal Atomic # 7 Polarization: -109.19 SS G_CDS: -8.66 Total: -117.85 kcal Atomic # 8 Polarization: -64.02 SS G_CDS: -2.01 Total: -66.03 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Total: -68.93 -2.48 -71.41 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596846239.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.416 kcal (2) G-P(sol) polarization free energy of solvation -68.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds