Wall clock time and date at job start Sat Apr 11 2020 05:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.46548 * 2 1 4 4 C 1.53005 * 109.46895 * 119.99484 * 2 1 3 5 5 N 1.46895 * 109.46671 * 175.18359 * 4 2 1 6 6 C 1.46843 * 110.99977 * 198.89475 * 5 4 2 7 7 C 1.53037 * 109.52520 * 174.16503 * 6 5 4 8 8 C 1.53118 * 109.28027 * 59.18019 * 7 6 5 9 9 C 1.52999 * 109.57380 * 182.41315 * 8 7 6 10 10 C 1.53123 * 109.15721 * 302.34548 * 8 7 6 11 11 C 1.46856 * 111.00075 * 74.68809 * 5 4 2 12 12 N 1.46498 * 109.47112 * 239.99818 * 2 1 3 13 13 C 1.34774 * 120.00161 * 83.99393 * 12 2 1 14 14 O 1.21591 * 120.00124 * 359.97438 * 13 12 2 15 15 N 1.34776 * 120.00153 * 179.97438 * 13 12 2 16 16 C 1.47421 * 125.64656 * 0.02562 * 15 13 12 17 17 C 1.54914 * 104.83065 * 204.09313 * 16 15 13 18 18 C 1.55157 * 101.58073 * 322.99169 * 17 16 15 19 19 O 1.42902 * 110.71986 * 277.13873 * 18 17 16 20 20 C 1.50701 * 110.72230 * 154.04374 * 18 17 16 21 21 H 1.08003 * 119.99243 * 359.97438 * 20 18 17 22 22 C 1.37876 * 120.00471 * 179.97438 * 20 18 17 23 23 N 1.31514 * 119.99404 * 359.97438 * 22 20 18 24 24 Si 1.86793 * 120.00077 * 179.97438 * 22 20 18 25 25 H 1.48506 * 109.47267 * 60.00054 * 24 22 20 26 26 H 1.48504 * 109.46902 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47130 * 299.99713 * 24 22 20 28 28 C 1.47026 * 125.64763 * 179.97438 * 15 13 12 29 29 H 1.08994 * 109.47312 * 300.00041 * 1 2 3 30 30 H 1.09002 * 109.46893 * 60.00515 * 1 2 3 31 31 H 1.09001 * 109.47219 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.46831 * 295.18557 * 4 2 1 33 33 H 1.08998 * 109.46552 * 55.18562 * 4 2 1 34 34 H 1.08999 * 109.46513 * 294.17776 * 6 5 4 35 35 H 1.09005 * 109.46315 * 54.14950 * 6 5 4 36 36 H 1.09010 * 109.50200 * 299.23635 * 7 6 5 37 37 H 1.08997 * 109.50676 * 179.12398 * 7 6 5 38 38 H 1.08996 * 109.52101 * 62.25173 * 8 7 6 39 39 H 1.09002 * 109.46773 * 179.71504 * 9 8 7 40 40 H 1.09003 * 109.46813 * 299.71114 * 9 8 7 41 41 H 1.08999 * 109.47561 * 59.71511 * 9 8 7 42 42 H 1.08991 * 109.50582 * 297.70978 * 10 8 7 43 43 H 1.09005 * 109.49745 * 177.59476 * 10 8 7 44 44 H 1.09001 * 109.45666 * 305.85369 * 11 5 4 45 45 H 1.09004 * 109.45957 * 65.81992 * 11 5 4 46 46 H 0.97000 * 119.99883 * 263.98992 * 12 2 1 47 47 H 1.08998 * 110.36786 * 85.25499 * 16 15 13 48 48 H 1.08997 * 110.36676 * 322.92984 * 16 15 13 49 49 H 1.08998 * 111.00151 * 81.06386 * 17 16 15 50 50 H 1.08996 * 111.00306 * 204.87686 * 17 16 15 51 51 H 0.96701 * 113.99966 * 180.02562 * 19 18 17 52 52 H 0.97003 * 119.99696 * 180.02562 * 23 22 20 53 53 H 1.08994 * 109.87954 * 59.55855 * 28 15 13 54 54 H 1.09004 * 110.01014 * 298.46382 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 7 3.5043 -0.8227 1.1926 6 6 3.9953 -1.8651 2.1029 7 6 5.5032 -2.0425 1.9116 8 6 6.2090 -0.7143 2.1987 9 6 7.7110 -0.8680 1.9512 10 6 5.6453 0.3652 1.2705 11 6 4.1332 0.4728 1.4804 12 7 2.0184 -0.6906 -1.1961 13 6 2.1279 -0.0235 -2.3620 14 8 1.8209 1.1516 -2.4212 15 7 2.5776 -0.6587 -3.4623 16 6 2.9822 -2.0746 -3.5319 17 6 3.9565 -2.1500 -4.7339 18 6 3.3067 -1.1484 -5.7248 19 8 2.2538 -1.7754 -6.4599 20 6 4.3407 -0.5772 -6.6605 21 1 5.3729 -0.8837 -6.5765 22 6 3.9692 0.3366 -7.6238 23 7 2.7121 0.7094 -7.7263 24 14 5.2511 1.0451 -8.7830 25 1 5.8811 -0.0551 -9.5564 26 1 4.6002 1.9973 -9.7184 27 1 6.2909 1.7559 -7.9964 28 6 2.7449 -0.0546 -4.7923 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 1.7488 -0.1599 2.1371 33 1 1.6079 -1.7209 1.2935 34 1 3.7918 -1.5729 3.1331 35 1 3.4885 -2.8053 1.8853 36 1 5.7064 -2.3482 0.8851 37 1 5.8700 -2.8053 2.5983 38 1 6.0382 -0.4280 3.2364 39 1 8.2109 0.0797 2.1512 40 1 8.1113 -1.6366 2.6123 41 1 7.8807 -1.1565 0.9139 42 1 5.8507 0.0975 0.2341 43 1 6.1135 1.3226 1.4993 44 1 3.7266 1.2306 0.8107 45 1 3.9291 0.7540 2.5136 46 1 2.2629 -1.6281 -1.1490 47 1 2.1136 -2.7092 -3.7072 48 1 3.4895 -2.3697 -2.6134 49 1 4.9562 -1.8234 -4.4476 50 1 3.9815 -3.1555 -5.1540 51 1 1.8149 -1.1918 -7.0938 52 1 2.4506 1.3521 -8.4042 53 1 3.4446 0.7791 -4.7353 54 1 1.7827 0.2941 -5.1673 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596846240.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:14 Heat of formation + Delta-G solvation = -109.319990 kcal Electronic energy + Delta-G solvation = -31700.256669 eV Core-core repulsion = 27670.272602 eV Total energy + Delta-G solvation = -4029.984067 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.29241 -40.17802 -39.12734 -37.07852 -36.03715 -34.79733 -34.15733 -32.39215 -31.74513 -31.01900 -29.50478 -29.20027 -26.94395 -25.99380 -24.34285 -24.15404 -22.84548 -21.84858 -21.31383 -20.91352 -20.51234 -19.22888 -18.80757 -17.51429 -17.03416 -16.93722 -16.60897 -16.17753 -15.97308 -15.56574 -15.40271 -15.27320 -14.96931 -14.86398 -14.74021 -14.65534 -14.21723 -14.08427 -13.75154 -13.47197 -13.42661 -13.28148 -13.25902 -13.05178 -12.82309 -12.72152 -12.65108 -12.50440 -12.47346 -12.32175 -12.27064 -12.09926 -12.07108 -11.83261 -11.52093 -11.21833 -11.15936 -11.13396 -11.06071 -10.62587 -10.28374 -10.08293 -9.30989 -9.20203 -8.25902 -6.41895 1.42648 1.43624 1.51715 1.78208 2.26935 2.38616 2.88985 3.00543 3.21273 3.75433 3.84355 3.87220 3.89654 3.98028 4.11816 4.19823 4.22230 4.33660 4.36758 4.42022 4.42982 4.52001 4.58928 4.63102 4.66381 4.70903 4.74135 4.78053 4.80005 4.81738 4.88940 4.95915 5.03414 5.05324 5.07258 5.15675 5.17101 5.25173 5.28935 5.30193 5.32368 5.35397 5.39805 5.51844 5.57467 5.71770 5.77193 6.04239 6.16475 6.23972 6.29650 6.64580 7.19275 7.30116 7.39747 7.70846 8.80244 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011997 B = 0.003149 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2333.412678 B = 8889.692097 C =10048.315865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.165 3.835 3 H 0.053 0.947 4 C 0.058 3.942 5 N -0.547 5.547 6 C 0.059 3.941 7 C -0.110 4.110 8 C -0.088 4.088 9 C -0.145 4.145 10 C -0.111 4.111 11 C 0.060 3.940 12 N -0.706 5.706 13 C 0.712 3.288 14 O -0.650 6.650 15 N -0.636 5.636 16 C 0.113 3.887 17 C -0.110 4.110 18 C 0.235 3.765 19 O -0.589 6.589 20 C -0.559 4.559 21 H 0.068 0.932 22 C 0.025 3.975 23 N -0.918 5.918 24 Si 0.964 3.036 25 H -0.266 1.266 26 H -0.283 1.283 27 H -0.274 1.274 28 C 0.142 3.858 29 H 0.085 0.915 30 H 0.028 0.972 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.101 0.899 34 H 0.039 0.961 35 H 0.087 0.913 36 H 0.058 0.942 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.053 0.947 40 H 0.065 0.935 41 H 0.046 0.954 42 H 0.047 0.953 43 H 0.065 0.935 44 H 0.050 0.950 45 H 0.043 0.957 46 H 0.407 0.593 47 H 0.068 0.932 48 H 0.098 0.902 49 H 0.080 0.920 50 H 0.089 0.911 51 H 0.378 0.622 52 H 0.271 0.729 53 H 0.025 0.975 54 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.955 -7.797 23.864 25.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.059 3.941 3 H 0.071 0.929 4 C -0.071 4.071 5 N -0.272 5.272 6 C -0.068 4.068 7 C -0.147 4.147 8 C -0.107 4.107 9 C -0.202 4.202 10 C -0.149 4.149 11 C -0.068 4.068 12 N -0.362 5.362 13 C 0.414 3.586 14 O -0.534 6.534 15 N -0.372 5.372 16 C -0.009 4.009 17 C -0.148 4.148 18 C 0.195 3.805 19 O -0.398 6.398 20 C -0.597 4.597 21 H 0.086 0.914 22 C -0.175 4.175 23 N -0.558 5.558 24 Si 0.789 3.211 25 H -0.191 1.191 26 H -0.209 1.209 27 H -0.199 1.199 28 C 0.018 3.982 29 H 0.104 0.896 30 H 0.047 0.953 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.119 0.881 34 H 0.058 0.942 35 H 0.105 0.895 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.084 0.916 44 H 0.069 0.931 45 H 0.061 0.939 46 H 0.243 0.757 47 H 0.086 0.914 48 H 0.116 0.884 49 H 0.098 0.902 50 H 0.108 0.892 51 H 0.228 0.772 52 H 0.080 0.920 53 H 0.043 0.957 54 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 2.893 -7.467 23.707 25.024 hybrid contribution 0.072 1.510 -0.828 1.723 sum 2.965 -5.958 22.880 23.828 Atomic orbital electron populations 1.22119 0.94644 1.02912 1.01896 1.20845 0.93707 0.96047 0.83485 0.92895 1.22365 0.87591 1.02079 0.95031 1.61777 1.05311 1.06474 1.53648 1.22142 0.95962 0.94937 0.93805 1.21640 0.94056 0.96907 1.02134 1.21146 0.95332 0.95232 0.98992 1.21795 0.95049 1.01858 1.01528 1.21608 0.94342 0.99183 0.99721 1.22013 0.95060 0.90955 0.98760 1.44757 1.70413 1.14339 1.06643 1.15754 0.78172 0.84060 0.80646 1.90823 1.59849 1.17227 1.85460 1.47821 1.67901 1.12797 1.08716 1.22312 0.97979 0.81053 0.99571 1.22704 0.97967 1.00161 0.93925 1.19672 0.84822 0.88060 0.87990 1.86054 1.52387 1.43771 1.57592 1.21849 0.95503 1.25562 1.16808 0.91426 1.25832 0.97529 0.95590 0.98596 1.69684 1.17424 1.33417 1.35238 0.85509 0.78919 0.78237 0.78392 1.19066 1.20884 1.19903 1.22298 0.97665 0.97262 0.81005 0.89637 0.95289 0.90776 0.91619 0.88054 0.94242 0.89460 0.92347 0.90029 0.90939 0.92777 0.91619 0.93512 0.93387 0.91631 0.93150 0.93933 0.75688 0.91384 0.88413 0.90151 0.89219 0.77160 0.91974 0.95668 0.95957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.48 9.47 71.98 0.68 -2.80 16 2 C 0.16 4.03 2.55 44.99 0.11 4.14 16 3 H 0.05 1.64 6.42 -2.39 -0.02 1.62 16 4 C 0.06 0.92 4.55 86.31 0.39 1.31 16 5 N -0.55 -9.83 4.32 -896.36 -3.87 -13.70 16 6 C 0.06 0.78 5.43 86.33 0.47 1.25 16 7 C -0.11 -1.52 5.38 30.65 0.16 -1.36 16 8 C -0.09 -1.34 2.79 -10.71 -0.03 -1.37 16 9 C -0.14 -2.10 9.20 71.98 0.66 -1.43 16 10 C -0.11 -2.19 5.38 30.65 0.16 -2.02 16 11 C 0.06 1.21 5.29 86.32 0.46 1.66 16 12 N -0.71 -20.75 4.77 -457.81 -2.19 -22.93 16 13 C 0.71 29.80 8.44 179.06 1.51 31.31 16 14 O -0.65 -33.32 16.35 -4.00 -0.07 -33.39 16 15 N -0.64 -27.25 3.33 -829.76 -2.76 -30.01 16 16 C 0.11 3.84 6.57 86.86 0.57 4.41 16 17 C -0.11 -4.30 6.22 31.99 0.20 -4.10 16 18 C 0.24 11.75 0.86 -10.35 -0.01 11.74 16 19 O -0.59 -30.79 13.09 -148.98 -1.95 -32.74 16 20 C -0.56 -30.10 8.11 25.60 0.21 -29.89 16 21 H 0.07 3.52 7.76 -2.91 -0.02 3.50 16 22 C 0.03 1.34 5.28 84.65 0.45 1.79 16 23 N -0.92 -51.28 10.98 21.45 0.24 -51.05 16 24 Si 0.96 42.90 29.54 68.60 2.03 44.93 16 25 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 26 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 27 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 28 C 0.14 7.41 5.54 86.73 0.48 7.89 16 29 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.07 0.88 8.01 -2.39 -0.02 0.86 16 33 H 0.10 1.21 7.81 -2.39 -0.02 1.19 16 34 H 0.04 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.09 0.95 7.94 -2.38 -0.02 0.93 16 36 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 37 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 44 H 0.05 1.28 6.74 -2.39 -0.02 1.27 16 45 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 46 H 0.41 9.89 7.07 -92.71 -0.66 9.24 16 47 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 48 H 0.10 2.56 7.30 -2.39 -0.02 2.54 16 49 H 0.08 3.05 8.03 -2.39 -0.02 3.03 16 50 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 51 H 0.38 20.80 6.98 -74.06 -0.52 20.28 16 52 H 0.27 14.49 8.31 -92.71 -0.77 13.72 16 53 H 0.02 1.45 7.82 -2.39 -0.02 1.43 16 54 H 0.02 1.29 8.07 -2.39 -0.02 1.27 16 Total: -1.00 -69.17 415.16 -2.38 -71.55 By element: Atomic # 1 Polarization: 45.10 SS G_CDS: -0.30 Total: 44.80 kcal Atomic # 6 Polarization: 16.05 SS G_CDS: 6.48 Total: 22.54 kcal Atomic # 7 Polarization: -109.11 SS G_CDS: -8.58 Total: -117.69 kcal Atomic # 8 Polarization: -64.11 SS G_CDS: -2.01 Total: -66.13 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -69.17 -2.38 -71.55 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596846240.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.765 kcal (2) G-P(sol) polarization free energy of solvation -69.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds