Wall clock time and date at job start Sat Apr 11 2020 05:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08995 * 109.47127 * 2 1 4 4 C 1.53000 * 109.47137 * 119.99611 * 2 1 3 5 5 N 1.46900 * 109.47272 * 175.00395 * 4 2 1 6 6 C 1.46848 * 110.99918 * 169.99731 * 5 4 2 7 7 C 1.53037 * 109.52381 * 174.15634 * 6 5 4 8 8 C 1.53123 * 109.27398 * 59.18254 * 7 6 5 9 9 C 1.53000 * 109.52334 * 182.37923 * 8 7 6 10 10 C 1.53120 * 109.21163 * 302.31409 * 8 7 6 11 11 C 1.46845 * 111.00045 * 45.79142 * 5 4 2 12 12 N 1.46499 * 109.47321 * 239.99394 * 2 1 3 13 13 C 1.34781 * 119.99578 * 85.00401 * 12 2 1 14 14 O 1.21346 * 119.99941 * 359.97438 * 13 12 2 15 15 C 1.49450 * 119.99635 * 179.97438 * 13 12 2 16 16 O 1.21344 * 120.00360 * 0.02562 * 15 13 12 17 17 N 1.34781 * 119.99551 * 179.97438 * 15 13 12 18 18 C 1.46501 * 119.99874 * 180.02562 * 17 15 13 19 19 C 1.52992 * 109.47386 * 180.02562 * 18 17 15 20 20 C 1.53001 * 109.47433 * 179.97438 * 19 18 17 21 21 C 1.50700 * 109.47194 * 179.97438 * 20 19 18 22 22 H 1.07999 * 120.00143 * 359.97438 * 21 20 19 23 23 C 1.37875 * 119.99922 * 180.02562 * 21 20 19 24 24 N 1.31514 * 120.00239 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 119.99964 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.47434 * 90.00018 * 25 23 21 27 27 H 1.48500 * 109.47204 * 210.00234 * 25 23 21 28 28 H 1.48500 * 109.47105 * 329.99752 * 25 23 21 29 29 H 1.09008 * 109.46815 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47202 * 300.00340 * 1 2 3 31 31 H 1.08999 * 109.46971 * 60.00826 * 1 2 3 32 32 H 1.09002 * 109.47284 * 55.00053 * 4 2 1 33 33 H 1.09007 * 109.47246 * 295.00493 * 4 2 1 34 34 H 1.09006 * 109.46097 * 54.14433 * 6 5 4 35 35 H 1.08996 * 109.46972 * 294.17743 * 6 5 4 36 36 H 1.08996 * 109.50616 * 299.24564 * 7 6 5 37 37 H 1.08992 * 109.50671 * 179.12200 * 7 6 5 38 38 H 1.09002 * 109.52319 * 62.25202 * 8 7 6 39 39 H 1.09003 * 109.47030 * 59.87206 * 9 8 7 40 40 H 1.08994 * 109.47335 * 179.87469 * 9 8 7 41 41 H 1.09001 * 109.46737 * 299.87118 * 9 8 7 42 42 H 1.09004 * 109.49930 * 177.63007 * 10 8 7 43 43 H 1.08997 * 109.50353 * 297.74224 * 10 8 7 44 44 H 1.09003 * 109.45905 * 305.85870 * 11 5 4 45 45 H 1.09002 * 109.46166 * 65.83312 * 11 5 4 46 46 H 0.96993 * 120.00084 * 264.99686 * 12 2 1 47 47 H 0.97000 * 120.00003 * 0.02562 * 17 15 13 48 48 H 1.09004 * 109.46891 * 300.00019 * 18 17 15 49 49 H 1.09002 * 109.47102 * 60.00055 * 18 17 15 50 50 H 1.09004 * 109.46915 * 299.99752 * 19 18 17 51 51 H 1.09002 * 109.47161 * 59.99839 * 19 18 17 52 52 H 1.08995 * 109.47066 * 300.00109 * 20 19 18 53 53 H 1.09002 * 109.46938 * 59.99874 * 20 19 18 54 54 H 0.97001 * 120.00382 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5041 -0.8265 1.1905 6 6 4.0497 -1.2961 2.4705 7 6 5.5550 -1.5327 2.3288 8 6 6.2350 -0.2258 1.9115 9 6 7.7320 -0.4698 1.7105 10 6 5.6165 0.2678 0.6006 11 6 4.1081 0.4515 0.7928 12 7 2.0184 -0.6907 -1.1961 13 6 2.1472 -0.0184 -2.3571 14 8 1.8582 1.1589 -2.4117 15 6 2.6459 -0.7228 -3.5771 16 8 2.9345 -1.9002 -3.5226 17 7 2.7742 -0.0506 -4.7382 18 6 3.2626 -0.7413 -5.9344 19 6 3.3142 0.2417 -7.1056 20 6 3.8248 -0.4794 -8.3547 21 6 3.8750 0.4888 -9.5084 22 1 3.5725 1.5156 -9.3653 23 6 4.3061 0.0634 -10.7470 24 7 4.6740 -1.1872 -10.9215 25 14 4.3690 1.2636 -12.1770 26 1 5.7006 1.9197 -12.2145 27 1 4.1423 0.5309 -13.4486 28 1 3.3139 2.2943 -12.0049 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 1.6054 -1.7197 1.2953 33 1 1.7516 -0.1582 2.1371 34 1 3.5606 -2.2282 2.7536 35 1 3.8710 -0.5444 3.2392 36 1 5.7338 -2.2944 1.5699 37 1 5.9624 -1.8663 3.2831 38 1 6.0893 0.5248 2.6884 39 1 7.8767 -1.2205 0.9336 40 1 8.2148 0.4604 1.4114 41 1 8.1709 -0.8232 2.6436 42 1 6.0679 1.2197 0.3211 43 1 5.7963 -0.4656 -0.1854 44 1 3.6614 0.7887 -0.1426 45 1 3.9292 1.1950 1.5695 46 1 2.2491 -1.6318 -1.1524 47 1 2.5432 0.8905 -4.7819 48 1 4.2620 -1.1330 -5.7451 49 1 2.5903 -1.5636 -6.1791 50 1 2.3149 0.6339 -7.2950 51 1 3.9867 1.0638 -6.8606 52 1 4.8241 -0.8712 -8.1649 53 1 3.1526 -1.3017 -8.5998 54 1 4.9769 -1.4866 -11.7930 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597257061.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:23 Heat of formation + Delta-G solvation = -117.987026 kcal Electronic energy + Delta-G solvation = -29913.244599 eV Core-core repulsion = 25882.884701 eV Total energy + Delta-G solvation = -4030.359898 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.81650 -40.45864 -39.52094 -37.45068 -37.00884 -35.30243 -34.80690 -33.03526 -32.14207 -31.77294 -29.27968 -28.95301 -26.50491 -25.88340 -24.58736 -24.10682 -22.91430 -22.36398 -21.55884 -21.31456 -20.53138 -19.46915 -18.49865 -17.99093 -17.26225 -17.09309 -16.82386 -16.49458 -16.26421 -15.99339 -15.69344 -15.61995 -15.37241 -15.05491 -14.90825 -14.80198 -14.28140 -14.21965 -13.96362 -13.77747 -13.64044 -13.47427 -13.31386 -13.10308 -12.88637 -12.75869 -12.74916 -12.69427 -12.54888 -12.44700 -12.40192 -12.15206 -11.92795 -11.70048 -11.56840 -11.54938 -11.23465 -11.17526 -11.05841 -10.66177 -10.54804 -10.31951 -10.22684 -9.25513 -8.19335 -6.30294 0.35729 1.33029 1.42151 1.43014 1.54144 2.15371 2.41729 2.63071 2.91738 3.14441 3.46110 3.61244 3.84047 3.86517 3.90125 4.08537 4.09651 4.18017 4.22454 4.31351 4.40143 4.47203 4.52461 4.54297 4.62723 4.69266 4.73200 4.73441 4.79855 4.85121 4.87879 4.91460 4.92655 4.96608 5.01885 5.12610 5.14764 5.20805 5.23759 5.25609 5.27295 5.30999 5.34197 5.51553 5.53521 5.70636 5.84429 5.94725 6.09681 6.15473 6.23201 6.38286 6.75644 6.86585 6.96324 7.38980 8.92604 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014046 B = 0.001970 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.954100 B =14208.723785 C =15424.640050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.137 3.863 3 H 0.081 0.919 4 C 0.051 3.949 5 N -0.546 5.546 6 C 0.058 3.942 7 C -0.110 4.110 8 C -0.090 4.090 9 C -0.146 4.146 10 C -0.112 4.112 11 C 0.054 3.946 12 N -0.669 5.669 13 C 0.515 3.485 14 O -0.544 6.544 15 C 0.499 3.501 16 O -0.547 6.547 17 N -0.688 5.688 18 C 0.128 3.872 19 C -0.105 4.105 20 C 0.025 3.975 21 C -0.542 4.542 22 H 0.064 0.936 23 C -0.002 4.002 24 N -0.933 5.933 25 Si 0.966 3.034 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.262 1.262 29 H 0.071 0.929 30 H 0.089 0.911 31 H 0.045 0.955 32 H 0.099 0.901 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.039 0.961 36 H 0.058 0.942 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.047 0.953 40 H 0.053 0.947 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.052 0.948 44 H 0.062 0.938 45 H 0.037 0.963 46 H 0.419 0.581 47 H 0.418 0.582 48 H 0.062 0.938 49 H 0.063 0.937 50 H 0.067 0.933 51 H 0.066 0.934 52 H -0.004 1.004 53 H -0.004 1.004 54 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.862 1.932 34.199 34.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.033 3.967 3 H 0.099 0.901 4 C -0.077 4.077 5 N -0.272 5.272 6 C -0.069 4.069 7 C -0.147 4.147 8 C -0.109 4.109 9 C -0.203 4.203 10 C -0.150 4.150 11 C -0.074 4.074 12 N -0.322 5.322 13 C 0.295 3.705 14 O -0.422 6.422 15 C 0.280 3.720 16 O -0.425 6.425 17 N -0.340 5.340 18 C 0.005 3.995 19 C -0.143 4.143 20 C -0.013 4.013 21 C -0.580 4.580 22 H 0.082 0.918 23 C -0.200 4.200 24 N -0.573 5.573 25 Si 0.790 3.210 26 H -0.198 1.198 27 H -0.209 1.209 28 H -0.186 1.186 29 H 0.090 0.910 30 H 0.108 0.892 31 H 0.064 0.936 32 H 0.117 0.883 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.057 0.943 36 H 0.077 0.923 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.071 0.929 44 H 0.080 0.920 45 H 0.055 0.945 46 H 0.257 0.743 47 H 0.255 0.745 48 H 0.081 0.919 49 H 0.082 0.918 50 H 0.085 0.915 51 H 0.085 0.915 52 H 0.014 0.986 53 H 0.015 0.985 54 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.683 1.461 33.742 33.974 hybrid contribution 0.114 0.836 -0.748 1.128 sum -3.570 2.297 32.994 33.266 Atomic orbital electron populations 1.22128 0.93237 1.03374 1.03037 1.21346 0.95118 0.97072 0.83159 0.90085 1.22488 0.87500 1.02148 0.95518 1.61971 1.04781 1.28807 1.31591 1.22119 0.95559 1.00453 0.88807 1.21631 0.94193 0.97063 1.01852 1.21161 0.95255 0.97717 0.96753 1.21802 0.95154 1.01491 1.01865 1.21650 0.94411 1.00945 0.98022 1.22123 0.95168 0.90200 0.99880 1.45719 1.63397 1.15225 1.07833 1.19873 0.79108 0.86608 0.84896 1.90745 1.50346 1.15960 1.85166 1.20445 0.79445 0.86921 0.85195 1.90749 1.50063 1.16346 1.85373 1.45879 1.64038 1.15322 1.08798 1.21452 0.99220 0.95669 0.83171 1.21635 1.01733 0.97754 0.93197 1.18932 0.94931 0.95213 0.92194 1.21672 1.43658 0.97176 0.95460 0.91775 1.25993 0.94931 0.97012 1.02080 1.70098 1.45354 1.17379 1.24511 0.85435 0.78861 0.78730 0.77942 1.19836 1.20933 1.18636 0.90972 0.89224 0.93586 0.88318 0.91274 0.89559 0.94261 0.92277 0.90204 0.91143 0.93375 0.92823 0.91751 0.91793 0.92927 0.91951 0.94475 0.74335 0.74453 0.91930 0.91824 0.91472 0.91511 0.98580 0.98542 0.92781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 9.48 71.98 0.68 -1.25 16 2 C 0.14 1.96 1.88 44.99 0.08 2.05 16 3 H 0.08 1.41 5.98 -2.39 -0.01 1.40 16 4 C 0.05 0.52 4.83 86.30 0.42 0.93 16 5 N -0.55 -7.35 4.54 -896.08 -4.07 -11.42 16 6 C 0.06 0.61 5.42 86.33 0.47 1.08 16 7 C -0.11 -1.28 5.38 30.65 0.16 -1.12 16 8 C -0.09 -1.18 2.78 -10.71 -0.03 -1.21 16 9 C -0.15 -1.87 9.20 71.98 0.66 -1.21 16 10 C -0.11 -1.88 5.39 30.69 0.17 -1.71 16 11 C 0.05 0.87 4.80 86.37 0.41 1.28 16 12 N -0.67 -12.94 4.26 -443.87 -1.89 -14.83 16 13 C 0.52 13.21 7.61 87.27 0.66 13.87 16 14 O -0.54 -15.65 16.14 -3.23 -0.05 -15.70 16 15 C 0.50 15.06 7.89 87.27 0.69 15.75 16 16 O -0.55 -18.99 16.48 -3.23 -0.05 -19.04 16 17 N -0.69 -20.75 5.55 -464.41 -2.58 -23.33 16 18 C 0.13 4.49 5.67 86.38 0.49 4.98 16 19 C -0.11 -4.12 5.27 30.59 0.16 -3.96 16 20 C 0.03 1.30 4.97 29.85 0.15 1.44 16 21 C -0.54 -30.42 9.11 25.60 0.23 -30.18 16 22 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 23 C 0.00 -0.14 5.46 84.65 0.46 0.32 16 24 N -0.93 -56.88 13.29 21.45 0.28 -56.59 16 25 Si 0.97 44.14 29.54 68.60 2.03 46.16 16 26 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 27 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 28 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 29 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.10 0.78 8.14 -2.39 -0.02 0.77 16 33 H 0.07 0.50 8.08 -2.38 -0.02 0.48 16 34 H 0.09 0.74 8.12 -2.38 -0.02 0.72 16 35 H 0.04 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 37 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 42 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.06 1.23 5.30 -2.39 -0.01 1.22 16 45 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 46 H 0.42 7.97 8.07 -92.71 -0.75 7.22 16 47 H 0.42 11.36 7.94 -92.71 -0.74 10.63 16 48 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 49 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 50 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 51 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 52 H 0.00 -0.24 8.14 -2.39 -0.02 -0.25 16 53 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 54 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -67.95 428.67 -1.07 -69.02 By element: Atomic # 1 Polarization: 25.27 SS G_CDS: -0.61 Total: 24.66 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: 5.88 Total: 1.08 kcal Atomic # 7 Polarization: -97.92 SS G_CDS: -8.26 Total: -106.18 kcal Atomic # 8 Polarization: -34.64 SS G_CDS: -0.11 Total: -34.74 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -67.95 -1.07 -69.02 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597257061.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.966 kcal (2) G-P(sol) polarization free energy of solvation -67.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds