Wall clock time and date at job start Sat Apr 11 2020 05:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42902 * 114.00509 * 2 1 4 4 C 1.53000 * 112.90146 * 48.74699 * 3 2 1 5 5 C 1.53774 * 113.61427 * 277.50143 * 3 2 1 6 6 C 1.53782 * 87.08050 * 270.87783 * 5 3 2 7 7 H 1.09005 * 113.68497 * 89.13341 * 6 5 3 8 8 N 1.46500 * 113.61562 * 220.01606 * 6 5 3 9 9 C 1.34772 * 120.00155 * 252.77405 * 8 6 5 10 10 O 1.21582 * 120.00163 * 354.66416 * 9 8 6 11 11 N 1.34777 * 119.99619 * 174.66026 * 9 8 6 12 12 C 1.47081 * 120.87927 * 184.69898 * 11 9 8 13 13 C 1.53699 * 108.27770 * 128.75374 * 12 11 9 14 14 N 1.46899 * 109.25708 * 54.08137 * 13 12 11 15 15 C 1.46900 * 111.00025 * 172.60590 * 14 13 12 16 16 C 1.50697 * 109.46910 * 59.67296 * 15 14 13 17 17 H 1.07999 * 120.00290 * 355.14484 * 16 15 14 18 18 C 1.37875 * 120.00080 * 175.14276 * 16 15 14 19 19 N 1.31519 * 120.00010 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00369 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46943 * 59.99670 * 20 18 16 22 22 H 1.48501 * 109.47272 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46837 * 300.00174 * 20 18 16 24 24 C 1.46897 * 111.26830 * 296.75663 * 14 13 12 25 25 C 1.47077 * 120.88404 * 4.97231 * 11 9 8 26 26 C 1.53774 * 87.08254 * 334.56938 * 6 5 3 27 27 C 1.53001 * 113.61597 * 139.97841 * 26 6 5 28 28 C 1.52996 * 113.61497 * 270.80184 * 26 6 5 29 29 H 1.08997 * 109.47236 * 300.00000 * 1 2 3 30 30 H 1.09000 * 109.47066 * 59.99569 * 1 2 3 31 31 H 1.09006 * 109.47589 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47229 * 191.24801 * 4 3 2 33 33 H 1.09000 * 109.47846 * 311.25541 * 4 3 2 34 34 H 1.09003 * 109.46946 * 71.25757 * 4 3 2 35 35 H 1.09002 * 113.61488 * 156.32719 * 5 3 2 36 36 H 1.09004 * 113.62078 * 25.42922 * 5 3 2 37 37 H 0.97003 * 119.99408 * 72.49831 * 8 6 5 38 38 H 1.08993 * 109.63057 * 248.52369 * 12 11 9 39 39 H 1.09004 * 109.62765 * 9.10199 * 12 11 9 40 40 H 1.09005 * 109.64850 * 294.07968 * 13 12 11 41 41 H 1.09003 * 109.44126 * 173.95966 * 13 12 11 42 42 H 1.09002 * 109.47040 * 179.67596 * 15 14 13 43 43 H 1.09002 * 109.47298 * 299.67771 * 15 14 13 44 44 H 0.96998 * 120.00075 * 179.97438 * 19 18 16 45 45 H 1.08991 * 109.49500 * 303.14174 * 24 14 13 46 46 H 1.09005 * 109.51277 * 183.07777 * 24 14 13 47 47 H 1.08993 * 109.62789 * 350.90313 * 25 11 9 48 48 H 1.09009 * 109.62491 * 111.28710 * 25 11 9 49 49 H 1.08997 * 109.47097 * 79.50491 * 27 26 6 50 50 H 1.08999 * 109.46771 * 199.50728 * 27 26 6 51 51 H 1.08995 * 109.46823 * 319.50325 * 27 26 6 52 52 H 1.08994 * 109.47666 * 40.49173 * 28 26 6 53 53 H 1.08999 * 109.47592 * 160.49791 * 28 26 6 54 54 H 1.09004 * 109.46889 * 280.49247 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.4035 2.2274 1.0596 5 6 2.0928 1.9430 -1.3969 6 6 3.4696 1.2719 -1.5356 7 1 3.4265 0.2670 -1.9556 8 7 4.4720 2.1184 -2.1873 9 6 4.8679 1.8463 -3.4465 10 8 4.4671 0.8445 -4.0068 11 7 5.7081 2.6850 -4.0847 12 6 6.0718 2.4625 -5.4924 13 6 5.8347 3.7704 -6.2640 14 7 6.5598 4.8624 -5.6009 15 6 6.5045 6.0932 -6.4009 16 6 5.0673 6.5043 -6.5914 17 1 4.2716 5.8702 -6.2291 18 6 4.7680 7.6901 -7.2280 19 7 5.7369 8.4627 -7.6686 20 14 2.9865 8.2002 -7.4635 21 1 2.3291 8.3287 -6.1381 22 1 2.9345 9.5054 -8.1699 23 1 2.2796 7.1722 -8.2690 24 6 6.0492 5.0937 -4.2431 25 6 6.2902 3.8435 -3.3904 26 6 3.5481 1.2950 0.0000 27 6 4.1524 0.0248 0.6020 28 6 4.1714 2.5739 0.5627 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.7358 3.2506 0.8842 33 1 0.3161 2.1832 1.0002 34 1 1.7267 1.9053 2.0495 35 1 2.1377 3.0319 -1.3779 36 1 1.3486 1.5612 -2.0959 37 1 4.8479 2.8770 -1.7139 38 1 7.1223 2.1798 -5.5589 39 1 5.4496 1.6712 -5.9107 40 1 4.7689 3.9986 -6.2800 41 1 6.1984 3.6600 -7.2856 42 1 7.0442 6.8869 -5.8843 43 1 6.9634 5.9153 -7.3735 44 1 5.5264 9.2967 -8.1168 45 1 4.9805 5.3034 -4.2872 46 1 6.5684 5.9428 -3.7986 47 1 5.8127 3.9656 -2.4183 48 1 7.3609 3.6895 -3.2557 49 1 5.2385 0.0650 0.5199 50 1 3.8698 -0.0495 1.6521 51 1 3.7791 -0.8458 0.0628 52 1 3.8112 3.4331 -0.0031 53 1 3.8904 2.6848 1.6099 54 1 5.2568 2.5149 0.4821 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601584842.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:45 Heat of formation + Delta-G solvation = -56.871873 kcal Electronic energy + Delta-G solvation = -31663.719606 eV Core-core repulsion = 27636.009860 eV Total energy + Delta-G solvation = -4027.709746 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.17193 -40.98699 -39.06978 -37.50351 -36.01929 -34.71812 -34.10108 -31.97277 -31.63330 -30.43470 -29.64142 -28.32328 -27.52873 -27.10314 -24.77251 -24.38052 -23.59492 -22.87318 -21.86344 -20.68232 -19.75269 -19.01372 -18.34153 -17.60547 -16.87334 -16.80522 -16.71493 -16.39435 -16.32847 -15.98302 -15.70618 -15.53673 -15.42372 -15.11213 -14.80324 -14.66476 -14.28325 -14.04975 -13.73466 -13.65021 -13.57568 -13.33127 -13.18771 -13.07441 -12.95983 -12.91796 -12.64060 -12.53466 -12.46301 -12.43985 -12.36091 -12.23884 -11.96401 -11.89553 -11.84572 -11.65200 -11.58508 -11.20467 -10.90392 -10.62348 -10.37986 -10.13132 -9.55960 -9.03426 -8.18036 -6.37211 1.33976 1.35415 1.43344 1.61887 2.09411 2.34495 2.63336 2.88749 3.07027 3.28646 3.32928 3.43913 3.75546 3.90144 3.99371 4.10795 4.16343 4.21481 4.23161 4.36302 4.44577 4.47199 4.52189 4.52948 4.55325 4.60940 4.74779 4.76389 4.77335 4.81619 4.86033 4.88363 4.92223 4.93572 5.00195 5.05233 5.11332 5.15864 5.18586 5.19208 5.21546 5.31931 5.42886 5.44062 5.48873 5.59972 5.71791 5.91937 6.03113 6.21408 6.30782 6.45670 6.82774 6.94694 7.34335 7.52862 8.84012 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013625 B = 0.002855 C = 0.002613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.546691 B = 9805.284100 C =10714.608994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.379 6.379 3 C 0.101 3.899 4 C -0.164 4.164 5 C -0.177 4.177 6 C 0.148 3.852 7 H 0.087 0.913 8 N -0.721 5.721 9 C 0.703 3.297 10 O -0.637 6.637 11 N -0.627 5.627 12 C 0.144 3.856 13 C 0.056 3.944 14 N -0.535 5.535 15 C 0.201 3.799 16 C -0.558 4.558 17 H 0.050 0.950 18 C 0.017 3.983 19 N -0.922 5.922 20 Si 0.951 3.049 21 H -0.270 1.270 22 H -0.279 1.279 23 H -0.276 1.276 24 C 0.051 3.949 25 C 0.125 3.875 26 C -0.064 4.064 27 C -0.125 4.125 28 C -0.135 4.135 29 H 0.061 0.939 30 H 0.037 0.963 31 H 0.095 0.905 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.101 0.899 36 H 0.057 0.943 37 H 0.408 0.592 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.014 0.986 41 H 0.074 0.926 42 H 0.016 0.984 43 H 0.005 0.995 44 H 0.266 0.734 45 H 0.017 0.983 46 H 0.084 0.916 47 H 0.102 0.898 48 H 0.091 0.909 49 H 0.058 0.942 50 H 0.069 0.931 51 H 0.046 0.954 52 H 0.066 0.934 53 H 0.085 0.915 54 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.715 -12.832 22.210 26.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.298 6.298 3 C 0.061 3.939 4 C -0.221 4.221 5 C -0.217 4.217 6 C 0.042 3.958 7 H 0.105 0.895 8 N -0.378 5.378 9 C 0.405 3.595 10 O -0.519 6.519 11 N -0.364 5.364 12 C 0.021 3.979 13 C -0.073 4.073 14 N -0.259 5.259 15 C 0.075 3.925 16 C -0.597 4.597 17 H 0.068 0.932 18 C -0.183 4.183 19 N -0.562 5.562 20 Si 0.776 3.224 21 H -0.195 1.195 22 H -0.204 1.204 23 H -0.201 1.201 24 C -0.079 4.079 25 C 0.003 3.997 26 C -0.065 4.065 27 C -0.183 4.183 28 C -0.192 4.192 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.113 0.887 32 H 0.101 0.899 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.119 0.881 36 H 0.075 0.925 37 H 0.248 0.752 38 H 0.102 0.898 39 H 0.098 0.902 40 H 0.032 0.968 41 H 0.093 0.907 42 H 0.034 0.966 43 H 0.023 0.977 44 H 0.075 0.925 45 H 0.036 0.964 46 H 0.102 0.898 47 H 0.120 0.880 48 H 0.109 0.891 49 H 0.077 0.923 50 H 0.088 0.912 51 H 0.065 0.935 52 H 0.085 0.915 53 H 0.104 0.896 54 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.347 -13.675 21.760 26.251 hybrid contribution -1.874 1.304 -0.960 2.477 sum -7.221 -12.371 20.800 25.255 Atomic orbital electron populations 1.22927 0.80161 1.03571 1.00770 1.87898 1.20859 1.26313 1.94769 1.22338 0.93790 0.83849 0.93940 1.22203 1.01554 0.99750 0.98602 1.24144 0.97674 1.01575 0.98281 1.22415 0.86718 0.94217 0.92409 0.89520 1.45157 1.45482 1.33963 1.13220 1.16062 0.78831 0.82469 0.82157 1.90846 1.63074 1.29614 1.68358 1.47402 1.48137 1.28007 1.12833 1.21613 1.01104 0.96099 0.79117 1.22309 0.95860 0.91183 0.97974 1.62412 1.53233 1.07267 1.02939 1.19426 0.94263 0.86760 0.92082 1.21918 0.94178 1.05514 1.38100 0.93234 1.25722 1.01051 0.96484 0.95043 1.70033 1.33555 1.13136 1.39438 0.85725 0.80558 0.77572 0.78529 1.19477 1.20426 1.20144 1.22286 0.97849 0.97680 0.90050 1.21892 0.99958 0.83131 0.94757 1.22357 0.92916 0.98488 0.92727 1.21531 1.00136 0.95547 1.01058 1.21704 1.01241 0.93881 1.02384 0.92023 0.94404 0.88659 0.89883 0.91447 0.90593 0.88065 0.92463 0.75188 0.89819 0.90166 0.96786 0.90726 0.96601 0.97669 0.92504 0.96419 0.89817 0.88022 0.89053 0.92276 0.91177 0.93533 0.91549 0.89579 0.90672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.35 113.37 1.17 1.48 16 2 O -0.38 -7.43 9.51 -148.98 -1.42 -8.84 16 3 C 0.10 1.69 1.08 -10.27 -0.01 1.68 16 4 C -0.16 -1.88 7.78 71.98 0.56 -1.32 16 5 C -0.18 -3.69 6.82 31.12 0.21 -3.48 16 6 C 0.15 3.44 3.64 45.52 0.17 3.61 16 7 H 0.09 2.62 7.28 -2.38 -0.02 2.60 16 8 N -0.72 -17.33 5.16 -455.31 -2.35 -19.68 16 9 C 0.70 22.82 8.31 179.06 1.49 24.31 16 10 O -0.64 -25.85 15.40 -3.98 -0.06 -25.91 16 11 N -0.63 -19.32 3.00 -835.04 -2.51 -21.82 16 12 C 0.14 4.77 6.61 86.50 0.57 5.34 16 13 C 0.06 2.20 5.17 86.54 0.45 2.65 16 14 N -0.53 -21.84 4.83 -898.87 -4.34 -26.18 16 15 C 0.20 10.22 5.11 85.56 0.44 10.66 16 16 C -0.56 -30.43 7.76 25.60 0.20 -30.23 16 17 H 0.05 2.72 5.88 -2.91 -0.02 2.70 16 18 C 0.02 0.94 5.46 84.65 0.46 1.40 16 19 N -0.92 -53.80 13.29 21.45 0.28 -53.51 16 20 Si 0.95 43.61 29.54 68.60 2.03 45.64 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 22 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 23 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 24 C 0.05 1.76 5.24 86.38 0.45 2.21 16 25 C 0.13 3.19 6.59 86.35 0.57 3.76 16 26 C -0.06 -1.03 1.27 -51.66 -0.07 -1.10 16 27 C -0.13 -2.08 8.68 71.98 0.63 -1.45 16 28 C -0.14 -1.46 6.56 71.98 0.47 -0.99 16 29 H 0.06 0.66 6.36 -2.39 -0.02 0.65 16 30 H 0.04 0.57 7.89 -2.39 -0.02 0.55 16 31 H 0.10 1.13 8.14 -2.38 -0.02 1.11 16 32 H 0.08 0.81 7.09 -2.39 -0.02 0.79 16 33 H 0.07 0.72 6.18 -2.39 -0.01 0.70 16 34 H 0.08 0.74 8.09 -2.39 -0.02 0.72 16 35 H 0.10 1.90 7.45 -2.39 -0.02 1.88 16 36 H 0.06 1.39 7.92 -2.38 -0.02 1.37 16 37 H 0.41 7.48 4.35 -92.71 -0.40 7.08 16 38 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.08 2.79 7.09 -2.39 -0.02 2.77 16 40 H 0.01 0.62 6.63 -2.38 -0.02 0.61 16 41 H 0.07 2.92 8.11 -2.39 -0.02 2.90 16 42 H 0.02 0.86 8.07 -2.39 -0.02 0.84 16 43 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 44 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 45 H 0.02 0.70 7.09 -2.39 -0.02 0.68 16 46 H 0.08 2.79 8.06 -2.38 -0.02 2.77 16 47 H 0.10 1.87 5.63 -2.39 -0.01 1.86 16 48 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 49 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 50 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 51 H 0.05 0.95 7.59 -2.39 -0.02 0.93 16 52 H 0.07 0.68 6.59 -2.39 -0.02 0.67 16 53 H 0.09 0.68 7.52 -2.39 -0.02 0.66 16 54 H 0.07 0.73 8.08 -2.39 -0.02 0.71 16 Total: -1.00 -70.36 404.61 -0.12 -70.48 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: 0.48 Total: 21.30 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: 7.76 Total: 18.54 kcal Atomic # 7 Polarization: -112.28 SS G_CDS: -8.91 Total: -121.19 kcal Atomic # 8 Polarization: -33.28 SS G_CDS: -1.48 Total: -34.76 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -70.36 -0.12 -70.48 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601584842.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.610 kcal (2) G-P(sol) polarization free energy of solvation -70.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds