Wall clock time and date at job start Sat Apr 11 2020 05:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 110.67121 * 2 1 4 4 C 1.55224 * 110.52157 * 237.07628 * 2 1 3 5 5 C 1.54819 * 101.98665 * 278.37754 * 4 2 1 6 6 H 1.09002 * 110.48607 * 98.00156 * 5 4 2 7 7 N 1.46492 * 110.48858 * 220.52011 * 5 4 2 8 8 C 1.34779 * 119.99772 * 272.02579 * 7 5 4 9 9 O 1.21583 * 120.00523 * 354.63070 * 8 7 5 10 10 N 1.34781 * 119.99630 * 174.62815 * 8 7 5 11 11 C 1.47082 * 120.87802 * 174.32542 * 10 8 7 12 12 C 1.53696 * 108.27860 * 128.75394 * 11 10 8 13 13 N 1.46898 * 109.25726 * 54.08079 * 12 11 10 14 14 C 1.46892 * 111.00139 * 172.60824 * 13 12 11 15 15 C 1.50699 * 109.47060 * 59.36685 * 14 13 12 16 16 H 1.07994 * 120.00111 * 5.07242 * 15 14 13 17 17 C 1.37882 * 119.99929 * 185.06507 * 15 14 13 18 18 N 1.31516 * 119.99932 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00003 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46651 * 90.00473 * 19 17 15 21 21 H 1.48495 * 109.47336 * 210.00370 * 19 17 15 22 22 H 1.48499 * 109.47018 * 330.00947 * 19 17 15 23 23 C 1.46903 * 111.26884 * 296.75972 * 13 12 11 24 24 C 1.47077 * 120.88464 * 354.59838 * 10 8 7 25 25 C 1.54098 * 104.30359 * 339.26328 * 5 4 2 26 26 C 1.52998 * 109.88002 * 117.32313 * 25 5 4 27 27 C 1.52992 * 109.87955 * 238.32728 * 25 5 4 28 28 O 1.43750 * 107.29646 * 357.90168 * 25 5 4 29 29 H 1.08993 * 109.46704 * 285.75679 * 1 2 3 30 30 H 1.09000 * 109.47313 * 45.76404 * 1 2 3 31 31 H 1.09006 * 109.46560 * 165.76104 * 1 2 3 32 32 H 1.09007 * 109.47069 * 181.51171 * 3 2 1 33 33 H 1.08995 * 109.47295 * 301.51033 * 3 2 1 34 34 H 1.08994 * 109.47023 * 61.51429 * 3 2 1 35 35 H 1.09005 * 110.89584 * 160.24765 * 4 2 1 36 36 H 1.09002 * 111.02601 * 36.57067 * 4 2 1 37 37 H 0.97003 * 120.00043 * 91.75465 * 7 5 4 38 38 H 1.09004 * 109.62734 * 248.52162 * 11 10 8 39 39 H 1.08999 * 109.62996 * 9.09755 * 11 10 8 40 40 H 1.08995 * 109.64675 * 294.07787 * 12 11 10 41 41 H 1.09002 * 109.44397 * 173.95784 * 12 11 10 42 42 H 1.09000 * 109.47542 * 179.36687 * 14 13 12 43 43 H 1.08997 * 109.47026 * 299.36538 * 14 13 12 44 44 H 0.96997 * 120.00013 * 179.97438 * 18 17 15 45 45 H 1.09005 * 109.48969 * 303.14469 * 23 13 12 46 46 H 1.08999 * 109.49658 * 183.06429 * 23 13 12 47 47 H 1.09001 * 109.62693 * 350.90348 * 24 10 8 48 48 H 1.09003 * 109.62860 * 111.47849 * 24 10 8 49 49 H 1.09001 * 109.47042 * 67.04844 * 26 25 5 50 50 H 1.09000 * 109.47370 * 187.04661 * 26 25 5 51 51 H 1.09002 * 109.47486 * 307.05027 * 26 25 5 52 52 H 1.09007 * 109.47258 * 60.00044 * 27 25 5 53 53 H 1.08997 * 109.47525 * 180.02562 * 27 25 5 54 54 H 1.09003 * 109.47221 * 299.99913 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0701 1.4315 0.0000 4 6 2.0742 -0.7901 -1.2203 5 6 1.9802 -2.2535 -0.7236 6 1 1.0730 -2.7265 -1.0996 7 7 3.1625 -3.0126 -1.1383 8 6 3.1812 -3.6292 -2.3367 9 8 2.1835 -3.6381 -3.0315 10 7 4.3060 -4.2358 -2.7649 11 6 4.3142 -5.0190 -4.0098 12 6 5.4830 -4.5296 -4.8796 13 7 6.7263 -4.5911 -4.0996 14 6 7.8924 -4.2995 -4.9438 15 6 7.7490 -2.9231 -5.5405 16 1 6.9210 -2.2929 -5.2515 17 6 8.6751 -2.4683 -6.4552 18 7 9.6832 -3.2359 -6.8074 19 14 8.4969 -0.7624 -7.1953 20 1 9.2180 0.2220 -6.3490 21 1 9.0726 -0.7541 -8.5641 22 1 7.0585 -0.3991 -7.2609 23 6 6.6747 -3.6874 -2.9426 24 6 5.5563 -4.1372 -1.9966 25 6 1.9286 -2.1319 0.8117 26 6 0.5997 -2.6828 1.3328 27 6 3.0923 -2.9057 1.4343 28 8 2.0385 -0.7352 1.1338 29 1 -0.3632 0.2791 0.9890 30 1 -0.3634 0.7169 -0.7363 31 1 -0.3633 -0.9962 -0.2528 32 1 3.1596 1.4088 -0.0271 33 1 1.6959 1.9611 -0.8761 34 1 1.7398 1.9444 0.9032 35 1 3.1081 -0.5165 -1.4309 36 1 1.4460 -0.6361 -2.0976 37 1 3.9334 -3.0682 -0.5522 38 1 4.4447 -6.0758 -3.7767 39 1 3.3739 -4.8719 -4.5412 40 1 5.3010 -3.5017 -5.1934 41 1 5.5732 -5.1677 -5.7587 42 1 8.7983 -4.3407 -4.3391 43 1 7.9556 -5.0374 -5.7435 44 1 10.3345 -2.9161 -7.4512 45 1 6.4761 -2.6712 -3.2834 46 1 7.6290 -3.7150 -2.4166 47 1 5.4376 -3.4068 -1.1963 48 1 5.8039 -5.1108 -1.5737 49 1 0.5606 -3.7587 1.1625 50 1 0.5164 -2.4808 2.4007 51 1 -0.2246 -2.2015 0.8065 52 1 4.0357 -2.4965 1.0727 53 1 3.0492 -2.8157 2.5197 54 1 3.0210 -3.9567 1.1542 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601589878.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:51 Heat of formation + Delta-G solvation = -75.627335 kcal Electronic energy + Delta-G solvation = -31946.571688 eV Core-core repulsion = 27918.048644 eV Total energy + Delta-G solvation = -4028.523044 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.08198 -40.92508 -39.08029 -36.25301 -36.02425 -34.76837 -34.31093 -32.68742 -31.87459 -30.36975 -29.51575 -28.94193 -27.63899 -27.09783 -24.91139 -24.44417 -23.87239 -22.22588 -21.42533 -20.93752 -20.53435 -19.26017 -18.35814 -17.60905 -16.99159 -16.75385 -16.53878 -16.53616 -16.09787 -15.97437 -15.81093 -15.55020 -15.21592 -15.03084 -14.68385 -14.41733 -14.14935 -14.00545 -13.87272 -13.64784 -13.62842 -13.18387 -13.09555 -13.03510 -12.99200 -12.95580 -12.85950 -12.79800 -12.54866 -12.50253 -12.35424 -12.23380 -11.96859 -11.86417 -11.84596 -11.77681 -11.65692 -11.42585 -11.20129 -10.76132 -10.63593 -10.20816 -9.60662 -9.05555 -8.19454 -6.38382 1.32049 1.33911 1.43495 1.55051 2.06519 2.33376 2.65213 2.83592 3.05703 3.28653 3.47125 3.57615 3.81514 3.87452 3.94308 3.98685 4.04082 4.10344 4.17096 4.25810 4.35712 4.38957 4.48356 4.52032 4.60565 4.68720 4.70496 4.74520 4.75115 4.79912 4.81757 4.83848 4.87759 4.91375 4.97191 5.04673 5.09537 5.16808 5.19630 5.20468 5.23414 5.27935 5.30503 5.38623 5.43173 5.50626 5.70493 5.87173 6.00612 6.03132 6.19516 6.44349 6.81471 6.88617 7.33071 7.48331 8.82796 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013914 B = 0.002983 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.867566 B = 9382.753420 C =10396.215348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.099 3.901 3 C -0.138 4.138 4 C -0.159 4.159 5 C 0.140 3.860 6 H 0.091 0.909 7 N -0.727 5.727 8 C 0.705 3.295 9 O -0.631 6.631 10 N -0.627 5.627 11 C 0.144 3.856 12 C 0.057 3.943 13 N -0.533 5.533 14 C 0.201 3.799 15 C -0.557 4.557 16 H 0.048 0.952 17 C 0.017 3.983 18 N -0.922 5.922 19 Si 0.951 3.049 20 H -0.271 1.271 21 H -0.279 1.279 22 H -0.276 1.276 23 C 0.049 3.951 24 C 0.125 3.875 25 C 0.096 3.904 26 C -0.167 4.167 27 C -0.150 4.150 28 O -0.367 6.367 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.409 0.591 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.012 0.988 41 H 0.074 0.926 42 H 0.012 0.988 43 H 0.010 0.990 44 H 0.266 0.734 45 H 0.014 0.986 46 H 0.084 0.916 47 H 0.097 0.903 48 H 0.095 0.905 49 H 0.072 0.928 50 H 0.074 0.926 51 H 0.071 0.929 52 H 0.063 0.937 53 H 0.078 0.922 54 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.219 2.954 19.367 26.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.060 3.940 3 C -0.195 4.195 4 C -0.198 4.198 5 C 0.034 3.966 6 H 0.109 0.891 7 N -0.388 5.388 8 C 0.407 3.593 9 O -0.513 6.513 10 N -0.363 5.363 11 C 0.021 3.979 12 C -0.073 4.073 13 N -0.257 5.257 14 C 0.074 3.926 15 C -0.596 4.596 16 H 0.066 0.934 17 C -0.183 4.183 18 N -0.561 5.561 19 Si 0.777 3.223 20 H -0.197 1.197 21 H -0.204 1.204 22 H -0.201 1.201 23 C -0.080 4.080 24 C 0.002 3.998 25 C 0.056 3.944 26 C -0.225 4.225 27 C -0.207 4.207 28 O -0.287 6.287 29 H 0.092 0.908 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.074 0.926 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.251 0.749 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.030 0.970 41 H 0.092 0.908 42 H 0.030 0.970 43 H 0.029 0.971 44 H 0.075 0.925 45 H 0.032 0.968 46 H 0.102 0.898 47 H 0.115 0.885 48 H 0.114 0.886 49 H 0.091 0.909 50 H 0.093 0.907 51 H 0.089 0.911 52 H 0.082 0.918 53 H 0.097 0.903 54 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -17.623 2.540 19.146 26.145 hybrid contribution 0.710 1.645 -1.353 2.245 sum -16.913 4.186 17.793 24.903 Atomic orbital electron populations 1.22432 0.93447 1.03119 1.03534 1.22569 0.94410 0.93077 0.83982 1.21762 1.01337 0.92991 1.03395 1.23668 1.02210 0.94923 0.99021 1.22196 0.88712 0.91184 0.94523 0.89055 1.45431 1.20037 1.55509 1.17782 1.15985 0.83042 0.78175 0.82101 1.90847 1.34955 1.67460 1.58012 1.47387 1.08986 1.54080 1.25854 1.21647 0.97761 0.95010 0.83510 1.22285 0.89927 0.98853 0.96191 1.62424 1.02958 1.50879 1.09423 1.19428 0.88301 0.93609 0.91217 1.21933 1.10040 1.02406 1.25243 0.93388 1.25721 0.94884 1.00960 0.96778 1.70036 1.14177 1.38194 1.33722 0.85665 0.78135 0.80448 0.78100 1.19688 1.20389 1.20055 1.22303 0.99203 0.93927 0.92614 1.21887 0.81700 1.03166 0.93053 1.22270 0.97690 0.83064 0.91386 1.22474 0.95618 1.01725 1.02651 1.21937 0.96475 0.99976 1.02341 1.88953 1.84178 1.16243 1.39322 0.90800 0.90508 0.91645 0.92566 0.90096 0.90947 0.91246 0.90409 0.74931 0.89475 0.89866 0.96992 0.90805 0.97034 0.97142 0.92495 0.96811 0.89754 0.88451 0.88643 0.90907 0.90692 0.91074 0.91822 0.90260 0.89895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.42 7.95 71.98 0.57 -1.84 16 2 C 0.10 1.76 1.25 -10.03 -0.01 1.74 16 3 C -0.14 -2.18 8.98 71.98 0.65 -1.53 16 4 C -0.16 -3.46 5.79 31.98 0.19 -3.27 16 5 C 0.14 2.99 2.51 45.99 0.12 3.10 16 6 H 0.09 2.20 7.10 -2.39 -0.02 2.18 16 7 N -0.73 -16.72 4.41 -453.08 -2.00 -18.72 16 8 C 0.71 21.65 8.30 179.05 1.49 23.14 16 9 O -0.63 -23.90 15.45 -3.98 -0.06 -23.96 16 10 N -0.63 -18.67 3.00 -835.03 -2.51 -21.18 16 11 C 0.14 4.61 6.64 86.50 0.57 5.18 16 12 C 0.06 2.23 5.17 86.54 0.45 2.67 16 13 N -0.53 -21.77 4.83 -898.91 -4.34 -26.11 16 14 C 0.20 10.24 5.11 85.56 0.44 10.68 16 15 C -0.56 -30.65 7.75 25.60 0.20 -30.45 16 16 H 0.05 2.67 5.88 -2.91 -0.02 2.66 16 17 C 0.02 0.92 5.46 84.66 0.46 1.39 16 18 N -0.92 -54.10 13.29 21.45 0.28 -53.82 16 19 Si 0.95 44.13 29.54 68.60 2.03 46.15 16 20 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 22 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 23 C 0.05 1.71 5.24 86.38 0.45 2.16 16 24 C 0.12 3.16 6.48 86.35 0.56 3.72 16 25 C 0.10 1.64 1.15 -10.43 -0.01 1.62 16 26 C -0.17 -2.35 8.28 71.98 0.60 -1.75 16 27 C -0.15 -2.10 7.57 71.98 0.55 -1.56 16 28 O -0.37 -7.17 10.36 -148.98 -1.54 -8.72 16 29 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.08 0.96 8.09 -2.39 -0.02 0.94 16 31 H 0.06 0.96 5.23 -2.38 -0.01 0.94 16 32 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.07 1.68 7.98 -2.38 -0.02 1.66 16 36 H 0.08 1.80 8.05 -2.39 -0.02 1.78 16 37 H 0.41 7.62 3.51 -92.71 -0.33 7.29 16 38 H 0.09 2.46 8.14 -2.38 -0.02 2.44 16 39 H 0.08 2.78 7.04 -2.39 -0.02 2.76 16 40 H 0.01 0.54 6.79 -2.39 -0.02 0.52 16 41 H 0.07 2.91 8.11 -2.39 -0.02 2.89 16 42 H 0.01 0.62 8.07 -2.39 -0.02 0.60 16 43 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 45 H 0.01 0.55 6.92 -2.38 -0.02 0.54 16 46 H 0.08 2.83 8.05 -2.39 -0.02 2.81 16 47 H 0.10 1.89 5.85 -2.39 -0.01 1.87 16 48 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 49 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 50 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 51 H 0.07 0.97 5.02 -2.39 -0.01 0.96 16 52 H 0.06 0.89 6.82 -2.38 -0.02 0.87 16 53 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 54 H 0.08 1.04 7.84 -2.39 -0.02 1.02 16 Total: -1.00 -68.26 401.93 -0.32 -68.58 By element: Atomic # 1 Polarization: 22.20 SS G_CDS: 0.56 Total: 22.76 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: 7.26 Total: 15.01 kcal Atomic # 7 Polarization: -111.27 SS G_CDS: -8.56 Total: -119.83 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -1.61 Total: -32.68 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Total: -68.26 -0.32 -68.58 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601589878.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.044 kcal (2) G-P(sol) polarization free energy of solvation -68.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.583 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds