Wall clock time and date at job start Sat Apr 11 2020 05:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 110.33340 * 2 1 4 4 C 1.54471 * 110.37280 * 122.25805 * 2 1 3 5 5 C 1.54508 * 104.06366 * 142.81023 * 4 2 1 6 6 H 1.09000 * 110.50787 * 241.21081 * 5 4 2 7 7 N 1.46506 * 110.51498 * 118.64206 * 5 4 2 8 8 C 1.34780 * 119.99792 * 86.45125 * 7 5 4 9 9 O 1.21585 * 120.00229 * 355.01616 * 8 7 5 10 10 N 1.34771 * 119.99440 * 175.01884 * 8 7 5 11 11 C 1.47094 * 120.85511 * 184.73999 * 10 8 7 12 12 C 1.53236 * 108.51633 * 231.11525 * 11 10 8 13 13 N 1.46889 * 109.36951 * 306.21475 * 12 11 10 14 14 C 1.46900 * 111.00520 * 187.24001 * 13 12 11 15 15 C 1.50703 * 109.46776 * 286.81556 * 14 13 12 16 16 H 1.07994 * 120.00395 * 5.19335 * 15 14 13 17 17 C 1.37884 * 119.99730 * 185.18767 * 15 14 13 18 18 N 1.31520 * 119.99798 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99961 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46725 * 60.00319 * 19 17 15 21 21 H 1.48500 * 109.47052 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47373 * 300.00562 * 19 17 15 23 23 C 1.46907 * 111.26928 * 63.08921 * 13 12 11 24 24 C 1.47082 * 120.88747 * 4.72012 * 10 8 7 25 25 C 1.54473 * 104.06533 * 359.97438 * 5 4 2 26 26 C 1.53005 * 110.36993 * 94.85527 * 25 5 4 27 27 C 1.52993 * 110.37682 * 217.19191 * 25 5 4 28 28 O 1.44426 * 104.80306 * 336.02668 * 25 5 4 29 29 H 1.09006 * 109.46558 * 297.74658 * 1 2 3 30 30 H 1.09007 * 109.46965 * 57.74449 * 1 2 3 31 31 H 1.09001 * 109.47349 * 177.74639 * 1 2 3 32 32 H 1.08998 * 109.47069 * 158.73748 * 3 2 1 33 33 H 1.08995 * 109.47211 * 278.74169 * 3 2 1 34 34 H 1.08999 * 109.46665 * 38.73917 * 3 2 1 35 35 H 1.09000 * 110.51634 * 24.16079 * 4 2 1 36 36 H 1.09003 * 110.50999 * 261.44852 * 4 2 1 37 37 H 0.96997 * 119.99533 * 266.45444 * 7 5 4 38 38 H 1.09004 * 109.60492 * 111.42822 * 11 10 8 39 39 H 1.08995 * 109.65301 * 350.84589 * 11 10 8 40 40 H 1.09004 * 109.49421 * 186.23911 * 12 11 10 41 41 H 1.09006 * 109.49322 * 66.19260 * 12 11 10 42 42 H 1.08991 * 109.46874 * 46.81481 * 14 13 12 43 43 H 1.08998 * 109.47155 * 166.81401 * 14 13 12 44 44 H 0.97000 * 119.99181 * 179.97438 * 18 17 15 45 45 H 1.09001 * 109.49172 * 56.85615 * 23 13 12 46 46 H 1.08996 * 109.49204 * 176.91011 * 23 13 12 47 47 H 1.09004 * 109.62213 * 9.14978 * 24 10 8 48 48 H 1.08993 * 109.79070 * 248.65860 * 24 10 8 49 49 H 1.08993 * 109.47480 * 88.54560 * 26 25 5 50 50 H 1.09003 * 109.46907 * 208.54530 * 26 25 5 51 51 H 1.08999 * 109.47012 * 328.53885 * 26 25 5 52 52 H 1.09007 * 109.46980 * 60.00301 * 27 25 5 53 53 H 1.09001 * 109.47429 * 179.97438 * 27 25 5 54 54 H 1.09000 * 109.47230 * 299.99991 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0617 1.4347 0.0000 4 6 2.0678 -0.7729 1.2246 5 6 3.3178 -1.5050 0.6872 6 1 3.1965 -2.5845 0.7778 7 7 4.5183 -1.0630 1.4012 8 6 4.8735 -1.6599 2.5562 9 8 4.1507 -2.5022 3.0526 10 7 6.0299 -1.3230 3.1609 11 6 6.4866 -2.0338 4.3649 12 6 6.8249 -0.9982 5.4425 13 7 7.7779 -0.0221 4.8980 14 6 8.2591 0.8860 5.9476 15 6 7.1640 1.8538 6.3153 16 1 6.1810 1.7475 5.8808 17 6 7.4170 2.8749 7.2067 18 7 8.6142 3.0045 7.7356 19 14 6.0597 4.0749 7.6621 20 1 4.9295 3.3336 8.2771 21 1 6.5842 5.0712 8.6303 22 1 5.5867 4.7741 6.4404 23 6 7.1910 0.7293 3.7803 24 6 6.8684 -0.2355 2.6342 25 6 3.3870 -1.0884 -0.7987 26 6 4.3206 0.1114 -0.9725 27 6 3.8598 -2.2616 -1.6594 28 8 2.0324 -0.7254 -1.1437 29 1 -0.3633 0.4785 0.9096 30 1 -0.3633 0.5485 -0.8691 31 1 -0.3634 -1.0269 -0.0404 32 1 3.0859 1.4426 0.3727 33 1 2.0415 1.8297 -1.0157 34 1 1.4363 2.0539 0.6431 35 1 1.3276 -1.4904 1.5786 36 1 2.3430 -0.0820 2.0215 37 1 5.0574 -0.3407 1.0426 38 1 7.3748 -2.6200 4.1288 39 1 5.6954 -2.6916 4.7246 40 1 7.2693 -1.4998 6.3022 41 1 5.9146 -0.4844 5.7518 42 1 8.5429 0.3074 6.8265 43 1 9.1244 1.4385 5.5814 44 1 8.7922 3.7231 8.3623 45 1 6.2754 1.2189 4.1121 46 1 7.9008 1.4808 3.4347 47 1 6.3292 0.2954 1.8496 48 1 7.7936 -0.6457 2.2296 49 1 5.3398 -0.2411 -1.1299 50 1 4.0018 0.6979 -1.8342 51 1 4.2849 0.7321 -0.0772 52 1 3.1620 -3.0926 -1.5557 53 1 3.9028 -1.9520 -2.7037 54 1 4.8507 -2.5762 -1.3322 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601589882.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:54 Heat of formation + Delta-G solvation = -70.431511 kcal Electronic energy + Delta-G solvation = -32106.260246 eV Core-core repulsion = 28077.962510 eV Total energy + Delta-G solvation = -4028.297736 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.16231 -40.94417 -39.07939 -36.15301 -36.01200 -34.77711 -34.30521 -32.62544 -31.87525 -30.57827 -29.64693 -29.01489 -27.43332 -27.07394 -24.84873 -24.53076 -23.82228 -22.23570 -21.32590 -20.99406 -20.51271 -19.29956 -18.34479 -17.67539 -17.04762 -16.85335 -16.57410 -16.40694 -16.09478 -15.99155 -15.62572 -15.49646 -15.21430 -14.93679 -14.74658 -14.57737 -14.23072 -14.01745 -13.77888 -13.64077 -13.53509 -13.46306 -13.01430 -12.99968 -12.94803 -12.93215 -12.82441 -12.76682 -12.56249 -12.50054 -12.39272 -12.19088 -12.04759 -11.94831 -11.80434 -11.61960 -11.55959 -11.34941 -11.19986 -10.81412 -10.62734 -10.23827 -9.60066 -9.03675 -8.18224 -6.37322 1.34400 1.35705 1.43566 1.54819 2.06872 2.34524 2.65338 2.89489 3.07029 3.29183 3.48948 3.55525 3.79018 3.85219 3.92211 3.97526 4.02462 4.11336 4.17023 4.30303 4.35581 4.41339 4.50249 4.52050 4.57546 4.59769 4.70657 4.77383 4.78500 4.79287 4.82820 4.85068 4.88928 4.93630 5.00085 5.04991 5.09554 5.16406 5.21054 5.21406 5.22583 5.30160 5.32416 5.37046 5.43231 5.45750 5.71890 5.87032 5.97885 6.01379 6.20952 6.45669 6.82534 6.89250 7.34221 7.49247 8.84015 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013264 B = 0.003114 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.523132 B = 8989.435286 C =10054.853080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.096 3.904 3 C -0.175 4.175 4 C -0.157 4.157 5 C 0.143 3.857 6 H 0.083 0.917 7 N -0.725 5.725 8 C 0.705 3.295 9 O -0.631 6.631 10 N -0.626 5.626 11 C 0.145 3.855 12 C 0.052 3.948 13 N -0.534 5.534 14 C 0.201 3.799 15 C -0.558 4.558 16 H 0.052 0.948 17 C 0.017 3.983 18 N -0.923 5.923 19 Si 0.951 3.049 20 H -0.277 1.277 21 H -0.280 1.280 22 H -0.268 1.268 23 C 0.052 3.948 24 C 0.124 3.876 25 C 0.097 3.903 26 C -0.184 4.184 27 C -0.137 4.137 28 O -0.364 6.364 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.408 0.592 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.009 0.991 42 H 0.004 0.996 43 H 0.015 0.985 44 H 0.266 0.734 45 H 0.019 0.981 46 H 0.081 0.919 47 H 0.098 0.902 48 H 0.094 0.906 49 H 0.085 0.915 50 H 0.081 0.919 51 H 0.071 0.929 52 H 0.060 0.940 53 H 0.077 0.923 54 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.294 -6.198 -21.092 24.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.057 3.943 3 C -0.232 4.232 4 C -0.196 4.196 5 C 0.037 3.963 6 H 0.101 0.899 7 N -0.386 5.386 8 C 0.407 3.593 9 O -0.512 6.512 10 N -0.362 5.362 11 C 0.021 3.979 12 C -0.077 4.077 13 N -0.258 5.258 14 C 0.074 3.926 15 C -0.597 4.597 16 H 0.070 0.930 17 C -0.183 4.183 18 N -0.562 5.562 19 Si 0.776 3.224 20 H -0.202 1.202 21 H -0.205 1.205 22 H -0.192 1.192 23 C -0.077 4.077 24 C 0.001 3.999 25 C 0.057 3.943 26 C -0.241 4.241 27 C -0.194 4.194 28 O -0.284 6.284 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.250 0.750 38 H 0.105 0.895 39 H 0.102 0.898 40 H 0.096 0.904 41 H 0.028 0.972 42 H 0.022 0.978 43 H 0.033 0.967 44 H 0.075 0.925 45 H 0.037 0.963 46 H 0.099 0.901 47 H 0.116 0.884 48 H 0.112 0.888 49 H 0.104 0.896 50 H 0.100 0.900 51 H 0.089 0.911 52 H 0.079 0.921 53 H 0.096 0.904 54 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.393 -7.006 -21.030 24.481 hybrid contribution -0.878 1.641 1.449 2.358 sum -11.271 -5.366 -19.581 23.221 Atomic orbital electron populations 1.21810 0.91593 1.02948 1.03202 1.22397 0.95689 0.91983 0.84206 1.22669 1.02263 0.94885 1.03339 1.23438 0.97854 0.99862 0.98417 1.22127 0.83556 0.99375 0.91232 0.89870 1.45369 1.29481 1.40379 1.23381 1.15970 0.80966 0.81230 0.81158 1.90861 1.54049 1.39002 1.67298 1.47378 1.21359 1.37611 1.29880 1.21535 0.99850 0.93358 0.83135 1.22281 0.94171 0.94105 0.97147 1.62419 1.35956 1.17267 1.10128 1.19427 0.94404 0.89788 0.88931 1.21929 0.97925 1.13551 1.26329 0.93019 1.25735 0.97482 0.99319 0.95803 1.70040 1.22208 1.33201 1.30746 0.85718 0.79432 0.78822 0.78382 1.20223 1.20531 1.19244 1.22271 0.98215 0.95520 0.91711 1.21895 0.95609 0.87125 0.95228 1.22516 0.84075 0.96196 0.91514 1.22728 1.00277 0.97600 1.03455 1.21813 1.01678 0.95760 1.00153 1.89223 1.26611 1.73972 1.38575 0.90371 0.91121 0.92040 0.91211 0.90843 0.91194 0.90740 0.91082 0.75022 0.89515 0.89827 0.90442 0.97217 0.97823 0.96665 0.92523 0.96259 0.90094 0.88403 0.88817 0.89577 0.90017 0.91095 0.92125 0.90438 0.90195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.17 8.76 71.98 0.63 -1.54 16 2 C 0.10 1.75 1.22 -10.29 -0.01 1.73 16 3 C -0.17 -2.75 7.63 71.98 0.55 -2.21 16 4 C -0.16 -3.42 5.85 31.61 0.18 -3.24 16 5 C 0.14 3.08 2.71 46.00 0.12 3.20 16 6 H 0.08 2.09 7.48 -2.39 -0.02 2.08 16 7 N -0.72 -16.10 4.73 -452.96 -2.14 -18.25 16 8 C 0.71 21.27 8.30 179.06 1.49 22.76 16 9 O -0.63 -23.79 15.56 -3.98 -0.06 -23.85 16 10 N -0.63 -18.21 3.01 -835.91 -2.52 -20.73 16 11 C 0.14 4.50 6.61 86.35 0.57 5.07 16 12 C 0.05 1.98 5.36 86.38 0.46 2.44 16 13 N -0.53 -21.46 4.83 -899.83 -4.35 -25.80 16 14 C 0.20 10.14 5.19 85.56 0.44 10.58 16 15 C -0.56 -30.16 7.81 25.60 0.20 -29.96 16 16 H 0.05 2.80 5.90 -2.91 -0.02 2.78 16 17 C 0.02 0.92 5.46 84.66 0.46 1.38 16 18 N -0.92 -53.66 13.29 21.45 0.28 -53.38 16 19 Si 0.95 43.26 29.54 68.60 2.03 45.29 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 21 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 22 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 23 C 0.05 1.81 4.99 86.38 0.43 2.24 16 24 C 0.12 3.08 6.54 86.35 0.56 3.64 16 25 C 0.10 1.63 1.19 -10.29 -0.01 1.62 16 26 C -0.18 -2.37 6.38 71.98 0.46 -1.91 16 27 C -0.14 -1.96 8.73 71.98 0.63 -1.33 16 28 O -0.36 -7.17 10.60 -148.98 -1.58 -8.75 16 29 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 30 H 0.07 0.99 8.14 -2.38 -0.02 0.98 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.07 1.10 4.86 -2.39 -0.01 1.09 16 33 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.07 1.04 7.99 -2.39 -0.02 1.02 16 35 H 0.07 1.72 7.87 -2.39 -0.02 1.70 16 36 H 0.07 1.73 7.69 -2.39 -0.02 1.71 16 37 H 0.41 7.16 3.42 -92.71 -0.32 6.84 16 38 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 39 H 0.08 2.72 7.04 -2.39 -0.02 2.70 16 40 H 0.08 2.88 7.95 -2.38 -0.02 2.86 16 41 H 0.01 0.41 7.46 -2.38 -0.02 0.40 16 42 H 0.00 0.20 7.91 -2.39 -0.02 0.18 16 43 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 45 H 0.02 0.77 6.39 -2.39 -0.02 0.75 16 46 H 0.08 2.78 8.11 -2.39 -0.02 2.76 16 47 H 0.10 1.78 5.73 -2.39 -0.01 1.77 16 48 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 49 H 0.09 0.85 7.90 -2.39 -0.02 0.83 16 50 H 0.08 1.00 8.09 -2.39 -0.02 0.98 16 51 H 0.07 0.95 3.74 -2.39 -0.01 0.94 16 52 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 53 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 54 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -67.52 400.88 -0.59 -68.12 By element: Atomic # 1 Polarization: 22.31 SS G_CDS: 0.57 Total: 22.87 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: 7.17 Total: 14.47 kcal Atomic # 7 Polarization: -109.43 SS G_CDS: -8.72 Total: -118.15 kcal Atomic # 8 Polarization: -30.96 SS G_CDS: -1.64 Total: -32.60 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -67.52 -0.59 -68.12 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601589882.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.316 kcal (2) G-P(sol) polarization free energy of solvation -67.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds