Wall clock time and date at job start Sat Apr 11 2020 05:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47026 * 2 1 4 4 O 1.42902 * 109.47167 * 299.99777 * 3 2 1 5 5 C 1.53002 * 109.47026 * 180.02562 * 3 2 1 6 6 C 1.53009 * 109.47163 * 179.97438 * 5 3 2 7 7 C 1.52994 * 109.46855 * 59.99673 * 6 5 3 8 8 N 1.46502 * 109.47458 * 60.00334 * 7 6 5 9 9 C 1.34770 * 120.00291 * 154.99418 * 8 7 6 10 10 O 1.21594 * 119.99971 * 354.91389 * 9 8 7 11 11 N 1.34778 * 120.00293 * 175.18948 * 9 8 7 12 12 C 1.47076 * 120.88504 * 184.43727 * 11 9 8 13 13 C 1.53691 * 108.27641 * 128.75480 * 12 11 9 14 14 N 1.46896 * 109.25746 * 54.08328 * 13 12 11 15 15 C 1.46902 * 110.99950 * 172.60651 * 14 13 12 16 16 C 1.50702 * 109.47320 * 294.30052 * 15 14 13 17 17 H 1.08003 * 119.99770 * 0.02562 * 16 15 14 18 18 C 1.37878 * 120.00134 * 179.97438 * 16 15 14 19 19 N 1.31522 * 119.99900 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00055 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47148 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47432 * 119.99926 * 20 18 16 23 23 H 1.48504 * 109.47166 * 240.00146 * 20 18 16 24 24 C 1.46894 * 111.26965 * 296.75503 * 14 13 12 25 25 C 1.47084 * 120.87616 * 4.71469 * 11 9 8 26 26 C 1.52993 * 109.47465 * 300.00018 * 7 6 5 27 27 C 1.52996 * 109.47493 * 59.99778 * 3 2 1 28 28 H 1.09000 * 109.46884 * 59.99984 * 1 2 3 29 29 H 1.09002 * 109.47095 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47104 * 300.00409 * 1 2 3 31 31 H 1.08995 * 109.47104 * 239.99591 * 2 1 3 32 32 H 1.09000 * 109.46884 * 120.00016 * 2 1 3 33 33 H 0.96697 * 114.00355 * 59.99970 * 4 3 2 34 34 H 1.09000 * 109.47563 * 59.99734 * 5 3 2 35 35 H 1.08995 * 109.46880 * 299.99524 * 5 3 2 36 36 H 1.09005 * 109.46409 * 299.99885 * 6 5 3 37 37 H 1.08992 * 109.47019 * 180.02562 * 6 5 3 38 38 H 1.09002 * 109.46910 * 180.02562 * 7 6 5 39 39 H 0.97002 * 119.99541 * 334.99967 * 8 7 6 40 40 H 1.08994 * 109.62814 * 248.52547 * 12 11 9 41 41 H 1.09001 * 109.62845 * 9.10323 * 12 11 9 42 42 H 1.08997 * 109.65113 * 294.07722 * 13 12 11 43 43 H 1.09007 * 109.42023 * 173.95011 * 13 12 11 44 44 H 1.09004 * 109.47172 * 54.30204 * 15 14 13 45 45 H 1.09004 * 109.47187 * 174.29870 * 15 14 13 46 46 H 0.96992 * 119.99505 * 179.97438 * 19 18 16 47 47 H 1.09006 * 109.49647 * 303.14523 * 24 14 13 48 48 H 1.08999 * 109.49263 * 183.06247 * 24 14 13 49 49 H 1.09001 * 109.62888 * 350.89599 * 25 11 9 50 50 H 1.09005 * 109.62679 * 111.47862 * 25 11 9 51 51 H 1.09000 * 109.47526 * 180.02562 * 26 7 6 52 52 H 1.09001 * 109.47510 * 300.00054 * 26 7 6 53 53 H 1.09001 * 109.47376 * 300.00200 * 27 3 2 54 54 H 1.08995 * 109.47265 * 59.99954 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 1.5637 2.1161 -1.1668 5 6 3.5700 1.4425 -0.0006 6 6 4.0801 2.8850 -0.0013 7 6 3.5705 3.6066 1.2479 8 7 4.0593 2.9164 2.4441 9 6 4.1885 3.5891 3.6048 10 8 3.9884 4.7880 3.6381 11 7 4.5449 2.9340 4.7274 12 6 4.5976 3.6289 6.0226 13 6 3.7873 2.8118 7.0413 14 7 4.2836 1.4293 7.0581 15 6 3.6568 0.6581 8.1400 16 6 4.0880 1.2179 9.4711 17 1 4.7602 2.0624 9.5095 18 6 3.6237 0.6526 10.6398 19 7 2.8048 -0.3755 10.5929 20 14 4.1576 1.3469 12.2896 21 1 5.0752 2.4938 12.0705 22 1 2.9633 1.8050 13.0439 23 1 4.8596 0.2935 13.0662 24 6 4.0808 0.7744 5.7590 25 6 4.8973 1.5065 4.6887 26 6 2.0406 3.6066 1.2485 27 6 1.5300 2.1638 1.2492 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 0.5997 2.1543 -1.2330 34 1 3.9330 0.9287 -0.8908 35 1 3.9337 0.9286 0.8891 36 1 3.7163 3.3985 -0.8914 37 1 5.1700 2.8850 -0.0022 38 1 3.9335 4.6344 1.2472 39 1 4.2900 1.9753 2.4007 40 1 5.6331 3.7088 6.3533 41 1 4.1646 4.6241 5.9220 42 1 2.7341 2.8167 6.7605 43 1 3.9020 3.2516 8.0321 44 1 2.5723 0.7242 8.0521 45 1 3.9643 -0.3852 8.0678 46 1 2.4785 -0.7734 11.4151 47 1 3.0235 0.8077 5.4959 48 1 4.4085 -0.2634 5.8197 49 1 4.6625 1.0979 3.7058 50 1 5.9611 1.3863 4.8937 51 1 1.6775 4.1211 2.1382 52 1 1.6768 4.1202 0.3585 53 1 0.4400 2.1638 1.2492 54 1 1.8933 1.6500 2.1391 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601589903.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:57 Heat of formation + Delta-G solvation = -102.557907 kcal Electronic energy + Delta-G solvation = -31635.047872 eV Core-core repulsion = 27605.357031 eV Total energy + Delta-G solvation = -4029.690841 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.80042 -40.55460 -39.05713 -37.02482 -35.97783 -34.46720 -33.95944 -33.22543 -31.96385 -31.82601 -30.08144 -29.10490 -27.16826 -25.03998 -24.55246 -24.02065 -23.55236 -22.46693 -21.55796 -20.78456 -20.18164 -19.19064 -18.48990 -17.64824 -17.06749 -16.97480 -16.63515 -16.52580 -16.04550 -15.84815 -15.53781 -15.44766 -15.35412 -15.16978 -15.01213 -14.58466 -14.33383 -14.21724 -14.01536 -13.92984 -13.51021 -13.29787 -13.13089 -13.07419 -12.74921 -12.62166 -12.59008 -12.54323 -12.36270 -12.32393 -12.17143 -12.11279 -11.91716 -11.80172 -11.74755 -11.61991 -11.35471 -11.15026 -11.01984 -10.62417 -10.52944 -10.15375 -9.57882 -9.04105 -8.21194 -6.30540 1.41411 1.42590 1.55608 1.61734 2.12827 2.40454 2.87740 3.11446 3.22725 3.34327 3.63586 3.75096 3.86606 3.94965 4.03871 4.05507 4.13998 4.15998 4.24722 4.31085 4.37589 4.39821 4.43308 4.53201 4.53545 4.63579 4.64221 4.71083 4.79872 4.84362 4.90257 4.94400 5.01694 5.04734 5.06592 5.12776 5.16763 5.17947 5.20193 5.23350 5.23919 5.31269 5.37472 5.46050 5.50104 5.64033 5.65228 5.94436 6.03583 6.25799 6.58359 6.85321 6.90393 6.95670 7.39304 7.54501 8.90108 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016812 B = 0.002575 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.060815 B =10871.255945 C =11855.370861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.148 4.148 3 C 0.142 3.858 4 O -0.564 6.564 5 C -0.107 4.107 6 C -0.112 4.112 7 C 0.163 3.837 8 N -0.725 5.725 9 C 0.705 3.295 10 O -0.634 6.634 11 N -0.629 5.629 12 C 0.146 3.854 13 C 0.058 3.942 14 N -0.537 5.537 15 C 0.209 3.791 16 C -0.522 4.522 17 H 0.065 0.935 18 C 0.002 3.998 19 N -0.934 5.934 20 Si 0.967 3.033 21 H -0.263 1.263 22 H -0.281 1.281 23 H -0.278 1.278 24 C 0.039 3.961 25 C 0.127 3.873 26 C -0.121 4.121 27 C -0.139 4.139 28 H 0.066 0.934 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.383 0.617 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.067 0.933 39 H 0.404 0.596 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.008 0.992 43 H 0.079 0.921 44 H -0.042 1.042 45 H 0.012 0.988 46 H 0.264 0.736 47 H 0.018 0.982 48 H 0.090 0.910 49 H 0.106 0.894 50 H 0.087 0.913 51 H 0.035 0.965 52 H 0.083 0.917 53 H 0.071 0.929 54 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.272 1.242 -25.984 26.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.186 4.186 3 C 0.101 3.899 4 O -0.372 6.372 5 C -0.144 4.144 6 C -0.150 4.150 7 C 0.058 3.942 8 N -0.384 5.384 9 C 0.407 3.593 10 O -0.516 6.516 11 N -0.366 5.366 12 C 0.022 3.978 13 C -0.071 4.071 14 N -0.262 5.262 15 C 0.083 3.917 16 C -0.560 4.560 17 H 0.083 0.917 18 C -0.196 4.196 19 N -0.575 5.575 20 Si 0.792 3.208 21 H -0.186 1.186 22 H -0.207 1.207 23 H -0.204 1.204 24 C -0.090 4.090 25 C 0.004 3.996 26 C -0.160 4.160 27 C -0.176 4.176 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.232 0.768 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.085 0.915 39 H 0.243 0.757 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.027 0.973 43 H 0.097 0.903 44 H -0.024 1.024 45 H 0.030 0.970 46 H 0.073 0.927 47 H 0.036 0.964 48 H 0.108 0.892 49 H 0.124 0.876 50 H 0.105 0.895 51 H 0.054 0.946 52 H 0.102 0.898 53 H 0.089 0.911 54 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.621 2.051 -25.900 25.988 hybrid contribution -1.661 -0.453 1.438 2.244 sum -1.041 1.598 -24.462 24.536 Atomic orbital electron populations 1.21862 0.95340 1.02476 1.02104 1.22172 0.96883 0.96487 1.03061 1.21105 0.94276 0.90361 0.84159 1.86493 1.27611 1.79469 1.43663 1.21563 0.92687 0.96918 1.03274 1.21670 1.01056 0.96010 0.96223 1.20823 0.93473 0.96441 0.83440 1.45299 1.70959 1.13992 1.08154 1.16002 0.77588 0.84662 0.81091 1.90856 1.60555 1.14576 1.85622 1.47411 1.71223 1.11290 1.06669 1.21560 1.00704 0.95181 0.80347 1.22352 0.94956 0.90172 0.99614 1.61991 1.58583 1.02106 1.03517 1.19371 0.90220 0.92831 0.89260 1.21498 1.27771 1.15705 0.91035 0.91696 1.25878 0.95060 0.95319 1.03299 1.70083 1.34120 1.24278 1.28990 0.85367 0.78100 0.78563 0.78801 1.18648 1.20726 1.20381 1.22514 0.97553 0.99203 0.89768 1.21831 1.00231 0.78680 0.98809 1.21784 0.95434 0.97297 1.01487 1.22183 1.01120 0.95672 0.98657 0.91532 0.92240 0.92785 0.90839 0.91074 0.76777 0.89954 0.90211 0.89425 0.90460 0.91468 0.75662 0.90372 0.89834 0.97342 0.90279 1.02446 0.97021 0.92725 0.96365 0.89194 0.87592 0.89460 0.94573 0.89821 0.91081 0.92112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.25 71.98 0.67 -0.99 16 2 C -0.15 -1.64 5.20 30.59 0.16 -1.48 16 3 C 0.14 1.75 0.73 -10.80 -0.01 1.75 16 4 O -0.56 -7.24 11.59 -148.98 -1.73 -8.96 16 5 C -0.11 -1.25 4.77 30.60 0.15 -1.10 16 6 C -0.11 -1.54 5.46 30.60 0.17 -1.37 16 7 C 0.16 3.20 2.82 44.99 0.13 3.32 16 8 N -0.73 -15.35 4.15 -457.83 -1.90 -17.25 16 9 C 0.70 21.08 8.27 179.06 1.48 22.56 16 10 O -0.63 -24.03 15.45 -4.01 -0.06 -24.09 16 11 N -0.63 -18.41 3.00 -835.04 -2.51 -20.91 16 12 C 0.15 4.81 6.61 86.50 0.57 5.38 16 13 C 0.06 2.28 5.47 86.54 0.47 2.76 16 14 N -0.54 -22.15 4.62 -898.88 -4.15 -26.30 16 15 C 0.21 10.84 4.72 85.56 0.40 11.25 16 16 C -0.52 -28.93 8.41 25.60 0.22 -28.71 16 17 H 0.06 3.53 7.13 -2.91 -0.02 3.51 16 18 C 0.00 0.14 5.46 84.65 0.46 0.60 16 19 N -0.93 -55.44 13.29 21.45 0.28 -55.16 16 20 Si 0.97 43.82 29.54 68.60 2.03 45.84 16 21 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 23 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 24 C 0.04 1.24 5.62 86.38 0.49 1.72 16 25 C 0.13 3.05 6.59 86.35 0.57 3.62 16 26 C -0.12 -2.38 5.46 30.61 0.17 -2.21 16 27 C -0.14 -2.20 4.41 30.61 0.13 -2.06 16 28 H 0.07 0.52 6.78 -2.39 -0.02 0.50 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.05 0.63 6.43 -2.39 -0.02 0.61 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.38 3.06 7.33 -74.06 -0.54 2.51 16 34 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.08 0.78 6.51 -2.39 -0.02 0.77 16 36 H 0.09 1.25 7.68 -2.38 -0.02 1.23 16 37 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.07 1.64 7.51 -2.39 -0.02 1.62 16 39 H 0.40 6.48 4.36 -92.71 -0.40 6.08 16 40 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 41 H 0.08 2.85 7.09 -2.39 -0.02 2.84 16 42 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 43 H 0.08 3.34 6.67 -2.38 -0.02 3.33 16 44 H -0.04 -2.42 8.12 -2.38 -0.02 -2.44 16 45 H 0.01 0.64 7.97 -2.38 -0.02 0.62 16 46 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 47 H 0.02 0.61 8.14 -2.38 -0.02 0.59 16 48 H 0.09 2.70 7.99 -2.39 -0.02 2.68 16 49 H 0.11 1.71 5.64 -2.39 -0.01 1.70 16 50 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 51 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 52 H 0.08 1.48 7.68 -2.39 -0.02 1.47 16 53 H 0.07 1.07 6.43 -2.39 -0.02 1.05 16 54 H 0.06 1.10 7.61 -2.39 -0.02 1.09 16 Total: -1.00 -70.73 400.87 -1.87 -72.60 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: -0.05 Total: 19.19 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: 6.22 Total: 15.04 kcal Atomic # 7 Polarization: -111.35 SS G_CDS: -8.27 Total: -119.62 kcal Atomic # 8 Polarization: -31.26 SS G_CDS: -1.79 Total: -33.05 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -70.73 -1.87 -72.60 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601589903.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.959 kcal (2) G-P(sol) polarization free energy of solvation -70.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds