Wall clock time and date at job start Sat Apr 11 2020 05:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00123 * 2 1 4 4 H 1.48498 * 109.46901 * 269.99884 * 3 2 1 5 5 H 1.48491 * 109.47166 * 29.99912 * 3 2 1 6 6 H 1.48503 * 109.46849 * 150.00132 * 3 2 1 7 7 C 1.37879 * 119.99770 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00135 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99850 * 180.02562 * 7 2 1 10 10 N 1.46899 * 109.47226 * 179.97438 * 9 7 2 11 11 C 1.46900 * 110.99665 * 294.30083 * 10 9 7 12 12 C 1.53238 * 109.33962 * 172.74627 * 11 10 9 13 13 N 1.47083 * 108.52302 * 53.82576 * 12 11 10 14 14 C 1.34774 * 120.87854 * 128.79310 * 13 12 11 15 15 O 1.21588 * 119.99787 * 175.02779 * 14 13 12 16 16 N 1.34775 * 120.00628 * 355.02856 * 14 13 12 17 17 C 1.46491 * 120.00603 * 185.07947 * 16 14 13 18 18 C 1.52993 * 109.47301 * 180.02562 * 17 16 14 19 19 C 1.53008 * 109.47180 * 180.02562 * 18 17 16 20 20 C 1.52993 * 109.47180 * 179.97438 * 19 18 17 21 21 H 1.09002 * 109.48525 * 305.02237 * 20 19 18 22 22 C 1.53091 * 109.48094 * 185.00260 * 20 19 18 23 23 C 1.53182 * 109.16486 * 182.41129 * 22 20 19 24 24 C 1.53176 * 109.03570 * 56.97578 * 23 22 20 25 25 C 1.53087 * 109.16373 * 303.01896 * 24 23 22 26 26 O 1.42901 * 109.48335 * 65.05911 * 20 19 18 27 27 C 1.47083 * 118.23605 * 308.81993 * 13 12 11 28 28 C 1.46889 * 111.00396 * 169.99650 * 10 9 7 29 29 H 0.97003 * 119.99657 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47094 * 299.99634 * 9 7 2 31 31 H 1.08993 * 109.47353 * 59.99240 * 9 7 2 32 32 H 1.08997 * 109.49420 * 292.70049 * 11 10 9 33 33 H 1.08997 * 109.49561 * 52.78543 * 11 10 9 34 34 H 1.09009 * 109.62681 * 294.12032 * 12 11 10 35 35 H 1.08999 * 109.63277 * 173.53712 * 12 11 10 36 36 H 0.97003 * 119.99243 * 5.08599 * 16 14 13 37 37 H 1.09002 * 109.47407 * 300.01015 * 17 16 14 38 38 H 1.09003 * 109.46637 * 59.99971 * 17 16 14 39 39 H 1.09001 * 109.47521 * 299.99976 * 18 17 16 40 40 H 1.08993 * 109.47562 * 60.00196 * 18 17 16 41 41 H 1.09001 * 109.46683 * 300.00256 * 19 18 17 42 42 H 1.09003 * 109.46888 * 59.99753 * 19 18 17 43 43 H 1.09005 * 109.52268 * 302.31043 * 22 20 19 44 44 H 1.08997 * 109.52628 * 62.50089 * 22 20 19 45 45 H 1.08997 * 109.54162 * 176.84396 * 23 22 20 46 46 H 1.09003 * 109.53913 * 297.02015 * 23 22 20 47 47 H 1.08995 * 109.52363 * 62.93185 * 24 23 22 48 48 H 1.09005 * 109.52127 * 183.11542 * 24 23 22 49 49 H 1.09008 * 109.47921 * 177.59240 * 25 24 23 50 50 H 1.08999 * 109.48176 * 297.61491 * 25 24 23 51 51 H 1.08998 * 109.62517 * 291.46840 * 27 13 12 52 52 H 1.08996 * 109.62779 * 170.89454 * 27 13 12 53 53 H 1.09003 * 109.49408 * 307.21523 * 28 10 9 54 54 H 1.08998 * 109.49525 * 67.29135 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0012 -2.5791 -0.0001 11 6 3.6441 -3.2638 1.2496 12 6 4.0098 -4.7476 1.1377 13 7 5.4258 -4.8522 0.7539 14 6 6.2757 -5.6319 1.4512 15 8 7.4202 -5.7780 1.0678 16 7 5.8570 -6.2496 2.5735 17 6 6.8079 -7.0061 3.3917 18 6 6.0807 -7.6032 4.5980 19 6 7.0741 -8.3928 5.4529 20 6 6.3470 -8.9895 6.6595 21 1 5.8378 -8.1957 7.2062 22 6 7.3613 -9.6735 7.5799 23 6 6.6193 -10.3199 8.7538 24 6 5.5768 -11.3000 8.2070 25 6 4.6314 -10.5531 7.2626 26 8 5.3888 -9.9502 6.2114 27 6 5.8898 -4.0829 -0.4107 28 6 5.4500 -2.6253 -0.2377 29 1 -0.4850 0.8401 -0.0004 30 1 3.8752 -0.6797 -0.8895 31 1 3.8746 -0.6808 0.8904 32 1 4.1914 -2.8159 2.0790 33 1 2.5728 -3.1654 1.4249 34 1 3.3885 -5.2216 0.3776 35 1 3.8540 -5.2368 2.0992 36 1 4.9258 -6.1933 2.8394 37 1 7.2421 -7.8087 2.7956 38 1 7.5996 -6.3410 3.7368 39 1 5.6464 -6.8008 5.1943 40 1 5.2893 -8.2683 4.2525 41 1 7.5088 -9.1952 4.8568 42 1 7.8653 -7.7274 5.7984 43 1 7.8996 -10.4403 7.0227 44 1 8.0670 -8.9338 7.9579 45 1 7.3294 -10.8563 9.3830 46 1 6.1227 -9.5474 9.3410 47 1 6.0790 -12.0996 7.6625 48 1 5.0063 -11.7235 9.0337 49 1 3.9136 -11.2545 6.8373 50 1 4.0995 -9.7801 7.8172 51 1 5.4493 -4.4930 -1.3194 52 1 6.9769 -4.1325 -0.4728 53 1 5.6885 -2.0638 -1.1411 54 1 5.9722 -2.1862 0.6123 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601595108.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:01 Heat of formation + Delta-G solvation = -100.684852 kcal Electronic energy + Delta-G solvation = -29612.234880 eV Core-core repulsion = 25582.625260 eV Total energy + Delta-G solvation = -4029.609619 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.46002 -40.38023 -39.20781 -36.91564 -35.96861 -34.67319 -34.51480 -34.23984 -32.21675 -31.28221 -30.35446 -27.90984 -26.85810 -25.19630 -24.69831 -23.75958 -23.20150 -22.26697 -22.01489 -21.10650 -20.40726 -19.14249 -18.88899 -17.52374 -17.45969 -16.89112 -16.81804 -16.57919 -16.07616 -15.95298 -15.76655 -15.57838 -15.44568 -15.26641 -15.21678 -14.94941 -14.52983 -14.45728 -14.36608 -13.78175 -13.62055 -13.45635 -13.32398 -13.12812 -12.91766 -12.70243 -12.54182 -12.43930 -12.31884 -12.20753 -12.06262 -11.99174 -11.95005 -11.83557 -11.67793 -11.52347 -11.40757 -11.25877 -11.09941 -10.76712 -10.31325 -10.24794 -9.59640 -9.04275 -8.27001 -6.29850 1.36110 1.37023 1.46871 1.61108 2.08766 2.34965 2.84944 2.89897 3.05469 3.15498 3.64423 3.89935 3.94251 3.97266 4.02508 4.04729 4.05297 4.09566 4.16439 4.24567 4.31026 4.39641 4.41013 4.49181 4.53113 4.58747 4.68586 4.72216 4.74571 4.79405 4.81747 4.86258 4.89762 4.90727 4.94561 5.00386 5.03668 5.08760 5.12901 5.14343 5.20762 5.27020 5.34038 5.41922 5.42481 5.52702 5.53884 5.85940 6.02367 6.30738 6.37046 6.60667 6.76329 6.90850 7.33732 7.50151 8.88853 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015527 B = 0.001837 C = 0.001712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.871656 B =15240.116160 C =16350.156581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.011 3.989 3 Si 0.943 3.057 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.255 1.255 7 C -0.513 4.513 8 H 0.046 0.954 9 C 0.171 3.829 10 N -0.538 5.538 11 C 0.052 3.948 12 C 0.126 3.874 13 N -0.629 5.629 14 C 0.704 3.296 15 O -0.633 6.633 16 N -0.738 5.738 17 C 0.140 3.860 18 C -0.116 4.116 19 C -0.105 4.105 20 C 0.088 3.912 21 H 0.062 0.938 22 C -0.151 4.151 23 C -0.125 4.125 24 C -0.155 4.155 25 C 0.054 3.946 26 O -0.399 6.399 27 C 0.142 3.858 28 C 0.042 3.958 29 H 0.266 0.734 30 H 0.030 0.970 31 H -0.015 1.015 32 H 0.023 0.977 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.105 0.895 36 H 0.407 0.593 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.069 0.931 42 H 0.093 0.907 43 H 0.065 0.935 44 H 0.084 0.916 45 H 0.073 0.927 46 H 0.067 0.933 47 H 0.064 0.936 48 H 0.084 0.916 49 H 0.098 0.902 50 H 0.054 0.946 51 H 0.077 0.923 52 H 0.091 0.909 53 H 0.093 0.907 54 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.359 -20.732 17.620 30.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.187 4.187 3 Si 0.767 3.233 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.179 1.179 7 C -0.551 4.551 8 H 0.064 0.936 9 C 0.044 3.956 10 N -0.263 5.263 11 C -0.077 4.077 12 C 0.003 3.997 13 N -0.366 5.366 14 C 0.405 3.595 15 O -0.516 6.516 16 N -0.396 5.396 17 C 0.016 3.984 18 C -0.154 4.154 19 C -0.143 4.143 20 C 0.031 3.969 21 H 0.080 0.920 22 C -0.188 4.188 23 C -0.162 4.162 24 C -0.193 4.193 25 C -0.022 4.022 26 O -0.318 6.318 27 C 0.019 3.981 28 C -0.087 4.087 29 H 0.075 0.925 30 H 0.048 0.952 31 H 0.002 0.998 32 H 0.042 0.958 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.123 0.877 36 H 0.245 0.755 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.111 0.889 43 H 0.084 0.916 44 H 0.102 0.898 45 H 0.092 0.908 46 H 0.085 0.915 47 H 0.083 0.917 48 H 0.103 0.897 49 H 0.116 0.884 50 H 0.072 0.928 51 H 0.095 0.905 52 H 0.109 0.891 53 H 0.111 0.889 54 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 14.793 -21.023 16.794 30.706 hybrid contribution -0.245 1.450 0.840 1.693 sum 14.548 -19.573 17.633 30.095 Atomic orbital electron populations 1.70034 1.07945 1.28014 1.52535 1.25768 0.95535 1.02853 0.94521 0.85783 0.79249 0.79133 0.79157 1.19123 1.20900 1.17910 1.21222 0.90729 0.93444 1.49734 0.93576 1.19947 0.94532 0.86087 0.95017 1.61794 1.12299 1.17146 1.35047 1.22323 1.01449 0.93917 0.89992 1.21813 0.80452 0.95674 1.01746 1.47427 1.09730 1.47625 1.31815 1.15979 0.83901 0.78975 0.80596 1.90851 1.19762 1.69104 1.71833 1.45253 1.13889 1.55763 1.24692 1.21249 0.91412 0.94451 0.91248 1.21645 0.98924 0.99875 0.94985 1.21516 0.97737 0.99547 0.95533 1.22185 0.89450 0.90260 0.95005 0.92039 1.22212 0.98525 1.01029 0.97056 1.21617 0.98298 0.98879 0.97420 1.22181 0.98360 0.98827 0.99940 1.22691 0.93396 0.96731 0.89407 1.87922 1.52579 1.57667 1.33667 1.21518 1.00177 0.89104 0.87314 1.22526 0.88066 0.96948 1.01182 0.92469 0.95157 0.99755 0.95839 0.90262 0.90245 0.87726 0.75482 0.92654 0.92337 0.90571 0.90916 0.91200 0.88892 0.91585 0.89769 0.90787 0.91463 0.91731 0.89722 0.88437 0.92796 0.90479 0.89097 0.88900 0.95831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.52 13.96 21.45 0.30 -57.22 16 2 C 0.01 0.62 5.47 84.65 0.46 1.08 16 3 Si 0.94 43.21 27.47 68.60 1.88 45.10 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.26 -11.04 6.54 99.48 0.65 -10.39 16 7 C -0.51 -28.49 8.96 25.60 0.23 -28.27 16 8 H 0.05 2.82 7.37 -2.91 -0.02 2.80 16 9 C 0.17 7.95 3.79 85.56 0.32 8.27 16 10 N -0.54 -21.21 4.62 -899.87 -4.16 -25.37 16 11 C 0.05 1.83 5.46 86.38 0.47 2.30 16 12 C 0.13 3.40 6.59 86.35 0.57 3.96 16 13 N -0.63 -18.40 3.01 -835.93 -2.52 -20.91 16 14 C 0.70 21.21 8.31 179.06 1.49 22.70 16 15 O -0.63 -23.48 15.83 -3.99 -0.06 -23.55 16 16 N -0.74 -16.54 5.47 -478.56 -2.62 -19.16 16 17 C 0.14 2.69 5.68 86.38 0.49 3.18 16 18 C -0.12 -1.61 5.23 30.59 0.16 -1.45 16 19 C -0.11 -1.27 4.92 30.59 0.15 -1.12 16 20 C 0.09 1.09 2.64 30.62 0.08 1.17 16 21 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 22 C -0.15 -1.51 5.42 30.69 0.17 -1.34 16 23 C -0.12 -1.09 6.03 30.71 0.19 -0.91 16 24 C -0.16 -1.45 6.14 30.68 0.19 -1.26 16 25 C 0.05 0.63 6.84 72.01 0.49 1.12 16 26 O -0.40 -6.36 9.95 -148.98 -1.48 -7.85 16 27 C 0.14 4.23 6.58 86.35 0.57 4.80 16 28 C 0.04 1.37 5.62 86.38 0.49 1.85 16 29 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 30 H 0.03 1.38 7.40 -2.39 -0.02 1.37 16 31 H -0.02 -0.72 7.18 -2.39 -0.02 -0.73 16 32 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.08 3.14 6.67 -2.39 -0.02 3.13 16 34 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 35 H 0.10 2.09 5.63 -2.39 -0.01 2.07 16 36 H 0.41 7.30 5.97 -92.71 -0.55 6.74 16 37 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.07 1.12 7.83 -2.39 -0.02 1.10 16 41 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 42 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 44 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 45 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 46 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 47 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 49 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 50 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 51 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 52 H 0.09 2.71 7.09 -2.39 -0.02 2.69 16 53 H 0.09 2.82 7.99 -2.39 -0.02 2.80 16 54 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -71.32 412.73 -1.89 -73.21 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: 0.25 Total: 19.64 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: 6.51 Total: 16.10 kcal Atomic # 7 Polarization: -113.66 SS G_CDS: -8.99 Total: -122.65 kcal Atomic # 8 Polarization: -29.85 SS G_CDS: -1.54 Total: -31.39 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 1.88 Total: 45.10 kcal Total: -71.32 -1.89 -73.21 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601595108.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.475 kcal (2) G-P(sol) polarization free energy of solvation -71.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds