Wall clock time and date at job start Sat Apr 11 2020 05:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48504 * 109.47032 * 179.72499 * 3 2 1 5 5 H 1.48497 * 109.46816 * 299.72616 * 3 2 1 6 6 H 1.48495 * 109.46630 * 59.72404 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47168 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47500 * 180.02562 * 10 9 7 12 12 O 1.21288 * 119.99625 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00325 * 180.02562 * 11 10 9 14 14 C 1.46499 * 119.99899 * 179.97438 * 13 11 10 15 15 H 1.08992 * 109.50755 * 325.00242 * 14 13 11 16 16 C 1.53116 * 109.50171 * 85.08081 * 14 13 11 17 17 C 1.53116 * 109.16268 * 177.59035 * 16 14 13 18 18 C 1.53042 * 109.28009 * 302.34777 * 17 16 14 19 19 N 1.46849 * 109.52014 * 59.17624 * 18 17 16 20 20 C 1.46907 * 110.99534 * 174.15830 * 19 18 17 21 21 C 1.53001 * 109.46738 * 66.04975 * 20 19 18 22 22 N 1.46899 * 109.46912 * 179.97438 * 21 20 19 23 23 C 1.47010 * 111.00284 * 293.63475 * 22 21 20 24 24 C 1.53097 * 109.25738 * 177.60898 * 23 22 21 25 25 O 1.43015 * 109.26288 * 56.84754 * 24 23 22 26 26 C 1.43015 * 113.73433 * 301.32948 * 25 24 23 27 27 C 1.47010 * 111.00045 * 169.99476 * 22 21 20 28 28 C 1.46844 * 111.23151 * 298.27788 * 19 18 17 29 29 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 30 30 H 1.08998 * 109.47224 * 299.99557 * 9 7 2 31 31 H 1.09002 * 109.47054 * 60.00069 * 9 7 2 32 32 H 1.09000 * 109.47339 * 299.99895 * 10 9 7 33 33 H 1.09002 * 109.46926 * 60.00175 * 10 9 7 34 34 H 0.97005 * 119.99841 * 359.97438 * 13 11 10 35 35 H 1.08993 * 109.52478 * 297.50197 * 16 14 13 36 36 H 1.09006 * 109.52636 * 57.68894 * 16 14 13 37 37 H 1.09000 * 109.50161 * 62.28850 * 17 16 14 38 38 H 1.09001 * 109.50787 * 182.40543 * 17 16 14 39 39 H 1.09004 * 109.46105 * 179.19160 * 18 17 16 40 40 H 1.08994 * 109.46033 * 299.17004 * 18 17 16 41 41 H 1.08997 * 109.46803 * 186.04123 * 20 19 18 42 42 H 1.08992 * 109.47199 * 306.04564 * 20 19 18 43 43 H 1.09004 * 109.47284 * 299.99583 * 21 20 19 44 44 H 1.08997 * 109.47213 * 59.99601 * 21 20 19 45 45 H 1.09003 * 109.50457 * 297.54053 * 23 22 21 46 46 H 1.09001 * 109.50697 * 57.66940 * 23 22 21 47 47 H 1.09000 * 109.50861 * 296.90671 * 24 23 22 48 48 H 1.09005 * 109.50659 * 176.78722 * 24 23 22 49 49 H 1.08998 * 109.51037 * 298.73501 * 26 25 24 50 50 H 1.09005 * 109.50320 * 178.60466 * 26 25 24 51 51 H 1.09004 * 109.51430 * 302.33363 * 27 22 21 52 52 H 1.08999 * 109.50581 * 62.41808 * 27 22 21 53 53 H 1.08997 * 109.42945 * 301.68615 * 28 19 18 54 54 H 1.09006 * 109.49267 * 181.72194 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0067 5 1 1.8955 2.3935 -1.2158 6 1 1.8854 2.3993 1.2091 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 6 2.2453 -3.6621 0.0166 11 6 1.4918 -4.9672 0.0217 12 8 0.2789 -4.9671 0.0208 13 7 2.1656 -6.1344 0.0272 14 6 1.4331 -7.4030 0.0328 15 1 0.5221 -7.2947 0.6212 16 6 1.0708 -7.7903 -1.4036 17 6 0.3589 -9.1459 -1.3943 18 6 1.2676 -10.1895 -0.7407 19 7 1.5848 -9.7735 0.6315 20 6 2.3413 -10.8170 1.3363 21 6 3.7134 -10.9834 0.6801 22 7 4.4701 -12.0264 1.3853 23 6 4.7942 -11.6065 2.7563 24 6 5.5285 -12.7431 3.4723 25 8 6.6951 -13.0962 2.7242 26 6 6.4161 -13.5108 1.3843 27 6 5.6908 -12.3819 0.6471 28 6 2.3103 -8.4969 0.6459 29 1 -0.4850 0.8401 -0.0041 30 1 0.6241 -2.5528 0.9015 31 1 0.6247 -2.5609 -0.8785 32 1 2.8719 -3.6083 -0.8736 33 1 2.8719 -3.6004 0.9064 34 1 3.1357 -6.1344 0.0276 35 1 0.4103 -7.0349 -1.8290 36 1 1.9791 -7.8601 -2.0023 37 1 -0.5691 -9.0657 -0.8281 38 1 0.1363 -9.4472 -2.4180 39 1 0.7579 -11.1527 -0.7196 40 1 2.1896 -10.2790 -1.3152 41 1 2.4702 -10.5301 2.3799 42 1 1.7964 -11.7594 1.2832 43 1 3.5846 -11.2702 -0.3636 44 1 4.2582 -10.0409 0.7333 45 1 5.4325 -10.7235 2.7252 46 1 3.8743 -11.3727 3.2924 47 1 4.8708 -13.6088 3.5510 48 1 5.8211 -12.4159 4.4701 49 1 5.7841 -14.3987 1.4021 50 1 7.3507 -13.7387 0.8717 51 1 5.4255 -12.7142 -0.3566 52 1 6.3431 -11.5111 0.5816 53 1 3.2277 -8.5947 0.0654 54 1 2.5577 -8.2306 1.6736 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603409722.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:30 Heat of formation + Delta-G solvation = -110.538205 kcal Electronic energy + Delta-G solvation = -29918.264617 eV Core-core repulsion = 25888.227724 eV Total energy + Delta-G solvation = -4030.036893 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.25261 -40.60193 -39.69613 -37.16293 -35.78382 -35.49981 -33.94606 -32.98407 -32.17054 -30.81591 -30.05799 -27.65220 -27.26443 -25.04200 -24.94734 -24.43555 -23.21785 -22.40316 -21.46908 -21.29395 -20.31756 -18.81808 -17.95512 -17.48329 -17.30570 -17.14956 -16.57591 -16.47913 -16.34256 -16.21574 -16.04557 -15.85926 -15.62746 -15.45770 -15.01824 -14.83658 -14.50974 -14.37375 -14.17873 -13.94433 -13.76676 -13.55292 -13.26586 -13.23317 -13.13586 -12.85663 -12.51013 -12.44579 -12.39832 -12.31930 -11.94859 -11.92312 -11.89174 -11.71944 -11.64051 -11.53989 -11.41586 -11.29005 -10.71706 -10.69108 -10.58796 -10.05876 -9.54886 -9.20947 -8.18884 -6.32998 1.41341 1.42919 1.56156 1.71769 2.11140 2.42570 2.64594 2.94832 3.11603 3.14054 3.64420 3.79746 3.81703 3.90357 3.98305 3.99325 4.03301 4.07560 4.18367 4.19909 4.26906 4.32328 4.36584 4.47302 4.49690 4.53801 4.54480 4.56656 4.58986 4.66204 4.73114 4.76640 4.80114 4.86729 4.90151 4.95752 5.00723 5.04393 5.08971 5.10281 5.22644 5.32923 5.46827 5.53215 5.62544 5.82147 5.84900 5.88432 6.04165 6.13340 6.16883 6.17493 6.61351 6.85889 7.35710 7.37881 8.93989 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.015714 B = 0.001858 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.427894 B =15065.551655 C =16296.578791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.009 4.009 3 Si 0.975 3.025 4 H -0.252 1.252 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.542 4.542 8 H 0.076 0.924 9 C 0.042 3.958 10 C -0.119 4.119 11 C 0.514 3.486 12 O -0.587 6.587 13 N -0.716 5.716 14 C 0.147 3.853 15 H 0.059 0.941 16 C -0.128 4.128 17 C -0.111 4.111 18 C 0.057 3.943 19 N -0.541 5.541 20 C 0.068 3.932 21 C 0.024 3.976 22 N -0.536 5.536 23 C 0.015 3.985 24 C 0.061 3.939 25 O -0.409 6.409 26 C 0.062 3.938 27 C 0.018 3.982 28 C 0.061 3.939 29 H 0.263 0.737 30 H -0.019 1.019 31 H -0.019 1.019 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.414 0.586 35 H 0.037 0.963 36 H 0.075 0.925 37 H 0.058 0.942 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.047 0.953 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.081 0.919 44 H 0.033 0.967 45 H 0.033 0.967 46 H 0.099 0.901 47 H 0.064 0.936 48 H 0.109 0.891 49 H 0.064 0.936 50 H 0.111 0.889 51 H 0.097 0.903 52 H 0.033 0.967 53 H 0.056 0.944 54 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.006 -32.430 1.307 35.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.799 3.201 4 H -0.176 1.176 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.580 4.580 8 H 0.094 0.906 9 C 0.004 3.996 10 C -0.159 4.159 11 C 0.302 3.698 12 O -0.466 6.466 13 N -0.369 5.369 14 C 0.042 3.958 15 H 0.078 0.922 16 C -0.167 4.167 17 C -0.150 4.150 18 C -0.070 4.070 19 N -0.265 5.265 20 C -0.060 4.060 21 C -0.105 4.105 22 N -0.262 5.262 23 C -0.114 4.114 24 C -0.015 4.015 25 O -0.328 6.328 26 C -0.015 4.015 27 C -0.111 4.111 28 C -0.067 4.067 29 H 0.071 0.929 30 H 0.000 1.000 31 H 0.000 1.000 32 H 0.122 0.878 33 H 0.122 0.878 34 H 0.251 0.749 35 H 0.056 0.944 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.104 0.896 39 H 0.110 0.890 40 H 0.065 0.935 41 H 0.095 0.905 42 H 0.109 0.891 43 H 0.099 0.901 44 H 0.051 0.949 45 H 0.051 0.949 46 H 0.117 0.883 47 H 0.082 0.918 48 H 0.127 0.873 49 H 0.082 0.918 50 H 0.129 0.871 51 H 0.116 0.884 52 H 0.051 0.949 53 H 0.074 0.926 54 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 12.448 -32.680 1.669 35.010 hybrid contribution 1.035 1.908 -0.633 2.261 sum 13.483 -30.772 1.035 33.612 Atomic orbital electron populations 1.70191 1.08320 1.27734 1.51523 1.26165 0.95750 1.04014 0.94676 0.85257 0.79291 0.78034 0.77549 1.17577 1.20614 1.20645 1.21751 0.94011 0.91600 1.50652 0.90561 1.18689 0.93725 0.92525 0.94651 1.21638 0.99298 0.90131 1.04811 1.21309 0.87820 0.86698 0.73960 1.90662 1.16732 1.88312 1.50929 1.45891 1.10757 1.04549 1.75669 1.20854 0.95526 0.82646 0.96750 0.92224 1.21935 1.00873 0.97754 0.96148 1.21536 0.98679 0.93259 1.01483 1.22171 0.98652 0.98642 0.87522 1.62052 1.44643 1.02411 1.17377 1.22170 0.91028 0.94989 0.97819 1.22817 0.95673 0.92859 0.99182 1.62227 1.20905 1.40568 1.02472 1.22880 1.00896 0.97221 0.90355 1.22785 0.86823 0.96748 0.95179 1.87970 1.32525 1.86813 1.25497 1.22789 1.01003 0.95734 0.81984 1.22824 0.90766 0.98523 0.98959 1.22144 0.94593 0.88735 1.01240 0.92867 1.00008 1.00015 0.87794 0.87755 0.74887 0.94373 0.90684 0.92345 0.89589 0.89012 0.93455 0.90491 0.89106 0.90075 0.94880 0.94881 0.88319 0.91758 0.87293 0.91812 0.87125 0.88432 0.94862 0.92561 0.90115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.08 13.29 21.45 0.28 -59.79 16 2 C -0.01 -0.51 5.46 84.66 0.46 -0.05 16 3 Si 0.97 44.61 29.54 68.60 2.03 46.63 16 4 H -0.25 -10.61 7.11 99.48 0.71 -9.91 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 7 C -0.54 -31.13 9.11 25.60 0.23 -30.89 16 8 H 0.08 3.98 7.74 -2.91 -0.02 3.95 16 9 C 0.04 2.36 4.26 29.85 0.13 2.48 16 10 C -0.12 -4.80 5.64 29.85 0.17 -4.63 16 11 C 0.51 20.07 7.80 87.66 0.68 20.75 16 12 O -0.59 -29.42 15.65 -3.05 -0.05 -29.47 16 13 N -0.72 -19.26 5.08 -442.30 -2.25 -21.51 16 14 C 0.15 3.69 2.62 45.04 0.12 3.80 16 15 H 0.06 1.96 7.58 -2.39 -0.02 1.94 16 16 C -0.13 -3.00 5.58 30.67 0.17 -2.83 16 17 C -0.11 -2.03 6.09 30.65 0.19 -1.84 16 18 C 0.06 0.80 5.05 86.33 0.44 1.23 16 19 N -0.54 -8.58 4.86 -896.35 -4.35 -12.93 16 20 C 0.07 0.82 5.29 86.30 0.46 1.28 16 21 C 0.02 0.27 4.26 86.30 0.37 0.64 16 22 N -0.54 -6.23 4.73 -895.23 -4.23 -10.46 16 23 C 0.01 0.17 5.44 86.31 0.47 0.64 16 24 C 0.06 0.69 7.01 72.01 0.50 1.20 16 25 O -0.41 -6.26 10.83 -148.98 -1.61 -7.87 16 26 C 0.06 0.65 7.01 72.02 0.50 1.16 16 27 C 0.02 0.19 5.64 86.32 0.49 0.67 16 28 C 0.06 1.06 4.31 86.33 0.37 1.43 16 29 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 30 H -0.02 -1.18 8.10 -2.39 -0.02 -1.20 16 31 H -0.02 -1.19 8.10 -2.39 -0.02 -1.21 16 32 H 0.10 3.67 8.14 -2.39 -0.02 3.65 16 33 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 34 H 0.41 7.95 8.60 -92.70 -0.80 7.16 16 35 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.07 1.49 8.14 -2.38 -0.02 1.48 16 37 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.09 1.06 8.06 -2.38 -0.02 1.04 16 40 H 0.05 0.56 6.75 -2.39 -0.02 0.55 16 41 H 0.08 0.95 6.51 -2.39 -0.02 0.94 16 42 H 0.09 1.07 8.06 -2.39 -0.02 1.05 16 43 H 0.08 0.86 6.58 -2.38 -0.02 0.84 16 44 H 0.03 0.42 6.48 -2.39 -0.02 0.40 16 45 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 46 H 0.10 0.95 6.38 -2.39 -0.02 0.93 16 47 H 0.06 0.66 8.14 -2.39 -0.02 0.65 16 48 H 0.11 0.94 8.14 -2.38 -0.02 0.92 16 49 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 50 H 0.11 0.82 8.14 -2.38 -0.02 0.80 16 51 H 0.10 0.78 8.09 -2.39 -0.02 0.76 16 52 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 53 H 0.06 0.80 6.60 -2.39 -0.02 0.78 16 54 H 0.08 1.41 8.12 -2.38 -0.02 1.39 16 Total: -1.00 -79.18 413.63 -4.36 -83.54 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 0.07 Total: 16.82 kcal Atomic # 6 Polarization: -10.71 SS G_CDS: 5.75 Total: -4.96 kcal Atomic # 7 Polarization: -94.15 SS G_CDS: -10.55 Total: -104.69 kcal Atomic # 8 Polarization: -35.68 SS G_CDS: -1.66 Total: -37.34 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -79.18 -4.36 -83.54 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603409722.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.995 kcal (2) G-P(sol) polarization free energy of solvation -79.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds