Wall clock time and date at job start Sat Apr 11 2020 05:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 120.00043 * 2 1 4 4 H 1.48494 * 109.47405 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46985 * 299.99895 * 3 2 1 6 6 H 1.48501 * 109.47046 * 59.99161 * 3 2 1 7 7 C 1.38809 * 120.00243 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99892 * 163.07291 * 7 2 1 9 9 N 1.36929 * 119.99984 * 343.06882 * 7 2 1 10 10 C 1.46927 * 120.63383 * 331.85456 * 9 7 2 11 11 C 1.53186 * 108.77743 * 233.58333 * 10 9 7 12 12 C 1.53043 * 109.31506 * 305.36225 * 11 10 9 13 13 N 1.46500 * 109.46311 * 181.38422 * 12 11 10 14 14 C 1.34777 * 119.99768 * 154.97690 * 13 12 11 15 15 O 1.21584 * 119.99966 * 359.97438 * 14 13 12 16 16 N 1.34779 * 119.99568 * 180.02562 * 14 13 12 17 17 C 1.46498 * 119.99710 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.47345 * 179.97438 * 17 16 14 19 19 H 1.09003 * 109.46919 * 305.00528 * 18 17 16 20 20 O 1.42899 * 109.47053 * 64.99724 * 18 17 16 21 21 C 1.52999 * 109.47611 * 185.00205 * 18 17 16 22 22 C 1.53005 * 109.46567 * 300.00102 * 21 18 17 23 23 C 1.52996 * 109.46661 * 180.02562 * 22 21 18 24 24 C 1.52999 * 109.47865 * 59.99686 * 23 22 21 25 25 C 1.52997 * 109.46879 * 300.00214 * 24 23 22 26 26 C 1.52998 * 109.47144 * 180.02562 * 21 18 17 27 27 C 1.53047 * 109.52418 * 61.36756 * 12 11 10 28 28 C 1.46929 * 120.63016 * 151.82697 * 9 7 2 29 29 H 0.97004 * 120.00227 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.58855 * 113.79701 * 10 9 7 31 31 H 1.08996 * 109.70144 * 353.43877 * 10 9 7 32 32 H 1.08997 * 109.50260 * 185.40801 * 11 10 9 33 33 H 1.09001 * 109.49902 * 65.31374 * 11 10 9 34 34 H 1.08996 * 109.45964 * 301.36256 * 12 11 10 35 35 H 0.96998 * 119.99843 * 334.96686 * 13 12 11 36 36 H 0.97005 * 120.00125 * 359.97438 * 16 14 13 37 37 H 1.08999 * 109.47434 * 59.99935 * 17 16 14 38 38 H 1.08998 * 109.47216 * 299.99964 * 17 16 14 39 39 H 0.96699 * 113.99873 * 59.99964 * 20 18 17 40 40 H 1.08996 * 109.47255 * 59.99810 * 21 18 17 41 41 H 1.09006 * 109.46995 * 299.99715 * 22 21 18 42 42 H 1.08990 * 109.47256 * 59.99966 * 22 21 18 43 43 H 1.09006 * 109.46883 * 299.99415 * 23 22 21 44 44 H 1.09003 * 109.47336 * 180.02562 * 23 22 21 45 45 H 1.09000 * 109.47571 * 179.97438 * 24 23 22 46 46 H 1.08996 * 109.46966 * 59.99903 * 24 23 22 47 47 H 1.09008 * 109.47471 * 299.99618 * 25 24 23 48 48 H 1.08996 * 109.47345 * 179.97438 * 25 24 23 49 49 H 1.09003 * 109.47000 * 299.99263 * 26 21 18 50 50 H 1.08996 * 109.47413 * 59.99645 * 26 21 18 51 51 H 1.09004 * 109.49644 * 58.58747 * 27 12 11 52 52 H 1.09001 * 109.49616 * 178.67479 * 27 12 11 53 53 H 1.09001 * 109.58777 * 246.20268 * 28 9 7 54 54 H 1.08998 * 109.58774 * 6.48910 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8913 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0552 -1.2224 -0.2718 9 7 1.3702 -2.3621 0.3464 10 6 0.2261 -2.3398 1.2680 11 6 0.4974 -3.3187 2.4146 12 6 0.8120 -4.7005 1.8368 13 7 1.0396 -5.6471 2.9315 14 6 0.8358 -6.9649 2.7360 15 8 0.4626 -7.3681 1.6514 16 7 1.0447 -7.8357 3.7433 17 6 0.8226 -9.2681 3.5311 18 6 1.1303 -10.0288 4.8224 19 1 2.1412 -9.7899 5.1528 20 8 0.1960 -9.6472 5.8342 21 6 1.0193 -11.5333 4.5671 22 6 -0.3997 -11.8685 4.1034 23 6 -0.5108 -13.3730 3.8486 24 6 -0.2034 -14.1332 5.1403 25 6 1.2156 -13.7979 5.6038 26 6 1.3264 -12.2938 5.8586 27 6 2.0676 -4.6168 0.9657 28 6 1.8140 -3.6528 -0.1975 29 1 -0.4851 0.8401 -0.0004 30 1 -0.6769 -2.6405 0.7369 31 1 0.0967 -1.3345 1.6688 32 1 -0.3831 -3.3835 3.0538 33 1 1.3471 -2.9671 2.9999 34 1 -0.0280 -5.0407 1.2312 35 1 1.3371 -5.3254 3.7969 36 1 1.3421 -7.5140 4.6088 37 1 1.4777 -9.6235 2.7357 38 1 -0.2165 -9.4368 3.2485 39 1 -0.7259 -9.8309 5.6076 40 1 1.7320 -11.8243 3.7954 41 1 -1.1124 -11.5774 4.8751 42 1 -0.6189 -11.3266 3.1835 43 1 0.2019 -13.6644 3.0770 44 1 -1.5216 -13.6118 3.5179 45 1 -0.2830 -15.2051 4.9588 46 1 -0.9160 -13.8418 5.9118 47 1 1.9284 -14.0894 4.8323 48 1 1.4346 -14.3392 6.5243 49 1 2.3373 -12.0551 6.1893 50 1 0.6135 -12.0027 6.6300 51 1 2.9024 -4.2529 1.5647 52 1 2.3047 -5.6058 0.5734 53 1 1.0404 -4.0606 -0.8482 54 1 2.7334 -3.5131 -0.7661 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609336172.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:41 Heat of formation + Delta-G solvation = -114.385819 kcal Electronic energy + Delta-G solvation = -30078.333268 eV Core-core repulsion = 26048.129531 eV Total energy + Delta-G solvation = -4030.203738 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.29189 -40.35579 -39.06963 -37.46063 -35.99083 -35.26272 -33.86706 -32.50502 -31.76487 -31.64405 -31.10762 -28.70608 -26.79319 -24.81629 -23.95857 -23.69358 -23.17850 -21.98960 -21.68009 -21.03983 -20.49627 -19.39855 -18.65500 -17.93057 -17.16278 -16.94180 -16.68986 -16.16550 -16.03534 -15.75601 -15.61647 -15.36168 -15.22100 -15.00572 -14.86359 -14.74507 -14.69204 -14.36482 -14.03290 -13.68116 -13.35165 -13.18654 -13.12084 -13.01517 -12.97398 -12.62268 -12.51068 -12.23530 -12.20136 -12.04358 -11.98881 -11.86542 -11.81300 -11.56595 -11.54238 -11.40964 -11.32543 -11.23022 -10.84753 -10.60482 -10.56348 -10.29636 -9.71302 -8.70571 -7.87428 -5.33188 1.47929 1.49862 1.60752 1.71491 2.19073 2.52332 3.21128 3.30195 3.51951 3.60714 3.67135 3.76923 3.82321 3.91226 4.00085 4.07489 4.18124 4.35131 4.36161 4.40684 4.44522 4.47036 4.60445 4.65370 4.65870 4.67736 4.69001 4.79681 4.82337 4.86856 4.96712 5.03677 5.05252 5.07261 5.16719 5.19751 5.25501 5.30131 5.30605 5.33803 5.39326 5.45985 5.47438 5.53192 5.61781 5.62240 5.65316 5.70764 6.05496 6.39482 6.74165 7.14772 7.14981 7.63193 7.84184 8.37507 9.19895 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.038321 B = 0.001709 C = 0.001697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.493384 B =16384.256696 C =16496.213067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.050 4.050 3 Si 0.969 3.031 4 H -0.266 1.266 5 H -0.294 1.294 6 H -0.288 1.288 7 C -0.263 4.263 8 H 0.068 0.932 9 N -0.608 5.608 10 C 0.179 3.821 11 C -0.128 4.128 12 C 0.182 3.818 13 N -0.727 5.727 14 C 0.698 3.302 15 O -0.638 6.638 16 N -0.729 5.729 17 C 0.107 3.893 18 C 0.114 3.886 19 H 0.111 0.889 20 O -0.563 6.563 21 C -0.109 4.109 22 C -0.123 4.123 23 C -0.119 4.119 24 C -0.119 4.119 25 C -0.120 4.120 26 C -0.105 4.105 27 C -0.123 4.123 28 C 0.145 3.855 29 H 0.251 0.749 30 H -0.006 1.006 31 H 0.064 0.936 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.054 0.946 35 H 0.409 0.591 36 H 0.411 0.589 37 H 0.064 0.936 38 H 0.063 0.937 39 H 0.383 0.617 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.059 0.941 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.061 0.939 47 H 0.060 0.940 48 H 0.065 0.935 49 H 0.062 0.938 50 H 0.065 0.935 51 H 0.066 0.934 52 H 0.057 0.943 53 H 0.006 0.994 54 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.911 -27.659 16.381 32.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.245 4.245 3 Si 0.797 3.203 4 H -0.191 1.191 5 H -0.221 1.221 6 H -0.214 1.214 7 C -0.393 4.393 8 H 0.085 0.915 9 N -0.332 5.332 10 C 0.052 3.948 11 C -0.167 4.167 12 C 0.076 3.924 13 N -0.382 5.382 14 C 0.398 3.602 15 O -0.520 6.520 16 N -0.385 5.385 17 C -0.017 4.017 18 C 0.055 3.945 19 H 0.129 0.871 20 O -0.371 6.371 21 C -0.128 4.128 22 C -0.160 4.160 23 C -0.156 4.156 24 C -0.157 4.157 25 C -0.157 4.157 26 C -0.142 4.142 27 C -0.163 4.163 28 C 0.018 3.982 29 H 0.060 0.940 30 H 0.012 0.988 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.073 0.927 35 H 0.245 0.755 36 H 0.247 0.753 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.233 0.767 40 H 0.100 0.900 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.079 0.921 48 H 0.084 0.916 49 H 0.081 0.919 50 H 0.084 0.916 51 H 0.084 0.916 52 H 0.076 0.924 53 H 0.024 0.976 54 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.021 -27.727 15.700 31.927 hybrid contribution -0.183 1.141 -0.186 1.171 sum 1.838 -26.585 15.514 30.836 Atomic orbital electron populations 1.70191 1.06707 1.25885 1.55403 1.25824 0.96053 1.01547 1.01124 0.85182 0.78605 0.79702 0.76776 1.19074 1.22131 1.21415 1.19556 0.92880 0.85834 1.40995 0.91470 1.44348 1.35931 1.02175 1.50740 1.20563 0.87727 0.97739 0.88749 1.22255 1.01926 0.93621 0.98914 1.20476 0.96888 0.87730 0.87302 1.45134 1.72646 1.04395 1.15980 1.16182 0.78267 0.81630 0.84143 1.90893 1.55676 1.78779 1.26649 1.44882 1.73251 1.06589 1.13824 1.22040 1.01687 0.78946 0.99064 1.22098 0.94295 0.92430 0.85702 0.87128 1.86561 1.20392 1.86202 1.43920 1.21722 0.98379 0.93739 0.99003 1.21674 0.96293 0.96820 1.01249 1.21502 1.01606 0.94710 0.97800 1.21535 0.96988 0.99855 0.97297 1.21534 0.97004 0.95919 1.01266 1.21430 1.01795 0.94532 0.96465 1.22180 0.97920 0.98469 0.97765 1.20966 0.97338 0.85972 0.93890 0.94015 0.98771 0.91792 0.90587 0.91092 0.92750 0.75493 0.75272 0.91808 0.91882 0.76718 0.90022 0.91081 0.92100 0.92231 0.91854 0.91870 0.91994 0.92137 0.91644 0.91877 0.91605 0.91567 0.92444 0.97564 0.92387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.48 11.19 21.65 0.24 -55.24 16 2 C -0.05 -2.80 4.92 84.86 0.42 -2.38 16 3 Si 0.97 44.70 29.59 68.60 2.03 46.73 16 4 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 6 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 7 C -0.26 -14.52 9.58 84.03 0.81 -13.72 16 8 H 0.07 3.62 7.89 -2.91 -0.02 3.60 16 9 N -0.61 -31.08 2.99 -699.13 -2.09 -33.18 16 10 C 0.18 8.63 5.30 86.36 0.46 9.09 16 11 C -0.13 -4.60 5.55 30.67 0.17 -4.43 16 12 C 0.18 6.35 2.42 45.02 0.11 6.46 16 13 N -0.73 -19.72 5.08 -457.67 -2.33 -22.05 16 14 C 0.70 20.32 8.53 179.05 1.53 21.85 16 15 O -0.64 -24.73 16.01 -3.98 -0.06 -24.80 16 16 N -0.73 -14.36 5.51 -478.54 -2.64 -16.99 16 17 C 0.11 1.81 4.81 86.38 0.42 2.22 16 18 C 0.11 1.27 2.80 30.59 0.09 1.36 16 19 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 20 O -0.56 -6.78 12.57 -148.98 -1.87 -8.65 16 21 C -0.11 -1.05 2.08 -10.79 -0.02 -1.08 16 22 C -0.12 -1.21 4.55 30.59 0.14 -1.07 16 23 C -0.12 -1.16 5.92 30.59 0.18 -0.98 16 24 C -0.12 -1.05 5.92 30.59 0.18 -0.87 16 25 C -0.12 -1.05 5.92 30.58 0.18 -0.87 16 26 C -0.10 -0.97 5.05 30.58 0.15 -0.82 16 27 C -0.12 -4.52 5.65 30.67 0.17 -4.35 16 28 C 0.14 6.40 6.52 86.36 0.56 6.96 16 29 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 30 H -0.01 -0.31 8.14 -2.39 -0.02 -0.33 16 31 H 0.06 3.44 6.07 -2.39 -0.01 3.43 16 32 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 33 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.05 2.23 7.57 -2.39 -0.02 2.21 16 35 H 0.41 8.35 8.62 -92.71 -0.80 7.55 16 36 H 0.41 6.01 8.49 -92.70 -0.79 5.22 16 37 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.06 1.18 6.71 -2.39 -0.02 1.16 16 39 H 0.38 3.24 7.33 -74.06 -0.54 2.69 16 40 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.07 0.60 6.78 -2.38 -0.02 0.58 16 42 H 0.06 0.72 6.54 -2.39 -0.02 0.71 16 43 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 44 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 45 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 47 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 48 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 49 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 50 H 0.07 0.69 7.68 -2.39 -0.02 0.67 16 51 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 52 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 53 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 54 H 0.06 2.49 7.93 -2.39 -0.02 2.47 16 Total: -1.00 -70.74 409.96 -2.41 -73.15 By element: Atomic # 1 Polarization: 24.88 SS G_CDS: -1.23 Total: 23.65 kcal Atomic # 6 Polarization: 11.83 SS G_CDS: 5.54 Total: 17.37 kcal Atomic # 7 Polarization: -120.65 SS G_CDS: -6.81 Total: -127.46 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: -1.94 Total: -33.45 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -70.74 -2.41 -73.15 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609336172.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.233 kcal (2) G-P(sol) polarization free energy of solvation -70.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds