Wall clock time and date at job start Sat Apr 11 2020 05:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86793 * 119.99999 * 2 1 4 4 H 1.48499 * 109.47044 * 240.00170 * 3 2 1 5 5 H 1.48496 * 109.47234 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47329 * 120.00170 * 3 2 1 7 7 C 1.38819 * 119.99968 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00110 * 165.42931 * 7 2 1 9 9 N 1.36938 * 119.99903 * 345.42199 * 7 2 1 10 10 C 1.46925 * 120.63038 * 331.50863 * 9 7 2 11 11 C 1.53197 * 108.77282 * 233.62659 * 10 9 7 12 12 C 1.53039 * 109.31164 * 305.36584 * 11 10 9 13 13 N 1.46499 * 109.46245 * 181.38727 * 12 11 10 14 14 C 1.34772 * 120.00359 * 154.97064 * 13 12 11 15 15 O 1.21591 * 119.99837 * 0.02562 * 14 13 12 16 16 N 1.34778 * 119.99992 * 179.97438 * 14 13 12 17 17 C 1.46505 * 120.00048 * 180.02562 * 16 14 13 18 18 H 1.09007 * 109.46968 * 35.00160 * 17 16 14 19 19 C 1.53001 * 109.46988 * 274.99964 * 17 16 14 20 20 O 1.42894 * 109.46791 * 295.91437 * 19 17 16 21 21 C 1.52996 * 109.47203 * 154.99499 * 17 16 14 22 22 C 1.52993 * 109.47687 * 302.24030 * 21 17 16 23 23 C 1.53002 * 109.47600 * 179.97438 * 22 21 17 24 24 C 1.53002 * 109.46891 * 59.99956 * 23 22 21 25 25 C 1.53003 * 109.47021 * 300.00405 * 24 23 22 26 26 C 1.52998 * 109.47273 * 60.00045 * 25 24 23 27 27 C 1.53040 * 109.52907 * 61.36953 * 12 11 10 28 28 C 1.46925 * 120.62983 * 151.52285 * 9 7 2 29 29 H 0.96994 * 119.99785 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.59165 * 113.84570 * 10 9 7 31 31 H 1.09001 * 109.70896 * 353.47989 * 10 9 7 32 32 H 1.08998 * 109.49708 * 185.41788 * 11 10 9 33 33 H 1.08997 * 109.52417 * 65.32613 * 11 10 9 34 34 H 1.09008 * 109.46031 * 301.35970 * 12 11 10 35 35 H 0.97002 * 119.99373 * 334.96568 * 13 12 11 36 36 H 0.97000 * 120.00305 * 359.97438 * 16 14 13 37 37 H 1.08999 * 109.46935 * 175.91374 * 19 17 16 38 38 H 1.09007 * 109.46902 * 55.91661 * 19 17 16 39 39 H 0.96699 * 113.99407 * 180.02562 * 20 19 17 40 40 H 1.09006 * 109.46765 * 62.24202 * 21 17 16 41 41 H 1.09006 * 109.47159 * 299.99932 * 22 21 17 42 42 H 1.09002 * 109.47470 * 59.99480 * 22 21 17 43 43 H 1.08997 * 109.46903 * 300.00400 * 23 22 21 44 44 H 1.08999 * 109.47383 * 179.97438 * 23 22 21 45 45 H 1.08993 * 109.46951 * 180.02562 * 24 23 22 46 46 H 1.09003 * 109.47214 * 59.99828 * 24 23 22 47 47 H 1.09006 * 109.47153 * 299.99794 * 25 24 23 48 48 H 1.08999 * 109.46955 * 180.02562 * 25 24 23 49 49 H 1.08999 * 109.47037 * 180.02562 * 26 25 24 50 50 H 1.08994 * 109.47352 * 60.00140 * 26 25 24 51 51 H 1.09002 * 109.49737 * 58.58213 * 27 12 11 52 52 H 1.09004 * 109.50166 * 178.67738 * 27 12 11 53 53 H 1.09005 * 109.58653 * 246.16385 * 28 9 7 54 54 H 1.09003 * 109.58338 * 6.44241 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6963 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2022 -0.0005 8 1 3.0642 -1.2172 -0.2358 9 7 1.3587 -2.3692 0.2974 10 6 0.1871 -2.3670 1.1841 11 6 0.4229 -3.3732 2.3150 12 6 0.7540 -4.7413 1.7143 13 7 0.9476 -5.7139 2.7926 14 6 0.7489 -7.0264 2.5600 15 8 0.4094 -7.4034 1.4550 16 7 0.9275 -7.9212 3.5520 17 6 0.7120 -9.3481 3.2989 18 1 1.0243 -9.5880 2.2825 19 6 -0.7725 -9.6775 3.4676 20 8 -1.1590 -9.4528 4.8248 21 6 1.5334 -10.1720 4.2926 22 6 3.0122 -9.8019 4.1625 23 6 3.8335 -10.6253 5.1566 24 6 3.6523 -12.1148 4.8574 25 6 2.1735 -12.4849 4.9875 26 6 1.3522 -11.6614 3.9934 27 6 2.0355 -4.6388 0.8840 28 6 1.8179 -3.6472 -0.2632 29 1 -0.4849 0.8400 0.0004 30 1 -0.6996 -2.6539 0.6188 31 1 0.0462 -1.3712 1.6045 32 1 -0.4768 -3.4520 2.9252 33 1 1.2544 -3.0369 2.9343 34 1 -0.0675 -5.0659 1.0756 35 1 1.2188 -5.4131 3.6741 36 1 1.1994 -7.6206 4.4332 37 1 -0.9445 -10.7223 3.2090 38 1 -1.3633 -9.0386 2.8110 39 1 -2.0900 -9.6422 5.0051 40 1 1.1941 -9.9616 5.3069 41 1 3.3515 -10.0123 3.1482 42 1 3.1414 -8.7408 4.3760 43 1 3.4941 -10.4146 6.1707 44 1 4.8871 -10.3620 5.0636 45 1 4.2371 -12.7014 5.5658 46 1 3.9917 -12.3256 3.8432 47 1 1.8340 -12.2742 6.0017 48 1 2.0445 -13.5461 4.7748 49 1 0.2986 -11.9248 4.0864 50 1 1.6916 -11.8722 2.9793 51 1 2.8519 -4.2902 1.5166 52 1 2.2839 -5.6185 0.4757 53 1 1.0642 -4.0384 -0.9466 54 1 2.7543 -3.4952 -0.8002 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609341331.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:51 Heat of formation + Delta-G solvation = -110.305723 kcal Electronic energy + Delta-G solvation = -30869.117790 eV Core-core repulsion = 26839.090979 eV Total energy + Delta-G solvation = -4030.026812 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.42004 -40.01114 -38.93288 -37.60709 -36.00352 -35.47526 -33.94363 -32.47400 -31.71372 -31.54354 -30.84245 -28.72522 -26.85800 -24.74333 -23.93150 -23.58592 -23.26346 -21.88909 -21.45348 -21.06433 -20.65322 -19.33354 -18.59835 -18.24982 -17.46479 -16.85335 -16.67743 -16.22236 -15.95166 -15.57829 -15.36524 -15.32060 -15.15259 -14.96838 -14.92417 -14.84250 -14.73501 -14.29934 -14.04832 -13.49428 -13.36598 -13.22345 -13.01771 -12.97162 -12.92345 -12.58174 -12.54123 -12.44957 -12.23160 -12.02546 -11.97646 -11.86513 -11.83417 -11.55676 -11.39557 -11.32557 -11.22389 -11.01388 -10.92345 -10.77403 -10.55039 -10.21769 -9.69237 -8.69659 -7.86579 -5.34090 1.49078 1.50850 1.58056 1.73276 2.21457 2.52345 3.24898 3.32834 3.43108 3.60077 3.67323 3.84286 3.88667 3.91592 4.07544 4.17121 4.29397 4.35235 4.37210 4.42136 4.46885 4.50706 4.59407 4.65712 4.66007 4.67141 4.75314 4.81057 4.82175 4.84498 4.88284 5.02387 5.06842 5.07887 5.16603 5.20506 5.28858 5.29746 5.31585 5.33580 5.42206 5.46969 5.48584 5.58701 5.63156 5.64535 5.67012 5.72146 6.09109 6.40108 6.87480 7.15113 7.16635 7.65737 7.84194 8.37426 9.20139 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.023105 B = 0.002138 C = 0.002044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.561392 B =13092.704743 C =13696.018785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.052 4.052 3 Si 0.972 3.028 4 H -0.277 1.277 5 H -0.294 1.294 6 H -0.275 1.275 7 C -0.263 4.263 8 H 0.067 0.933 9 N -0.609 5.609 10 C 0.179 3.821 11 C -0.128 4.128 12 C 0.183 3.817 13 N -0.728 5.728 14 C 0.701 3.299 15 O -0.637 6.637 16 N -0.720 5.720 17 C 0.170 3.830 18 H 0.078 0.922 19 C 0.068 3.932 20 O -0.574 6.574 21 C -0.075 4.075 22 C -0.114 4.114 23 C -0.116 4.116 24 C -0.121 4.121 25 C -0.114 4.114 26 C -0.111 4.111 27 C -0.122 4.122 28 C 0.145 3.855 29 H 0.251 0.749 30 H -0.007 1.007 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.054 0.946 35 H 0.408 0.592 36 H 0.407 0.593 37 H 0.073 0.927 38 H 0.024 0.976 39 H 0.393 0.607 40 H 0.085 0.915 41 H 0.050 0.950 42 H 0.059 0.941 43 H 0.066 0.934 44 H 0.061 0.939 45 H 0.067 0.933 46 H 0.057 0.943 47 H 0.064 0.936 48 H 0.069 0.931 49 H 0.071 0.929 50 H 0.059 0.941 51 H 0.065 0.935 52 H 0.057 0.943 53 H 0.006 0.994 54 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.059 -25.798 15.711 30.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.247 4.247 3 Si 0.799 3.201 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.201 1.201 7 C -0.393 4.393 8 H 0.085 0.915 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.167 4.167 12 C 0.077 3.923 13 N -0.382 5.382 14 C 0.401 3.599 15 O -0.519 6.519 16 N -0.375 5.375 17 C 0.064 3.936 18 H 0.096 0.904 19 C -0.011 4.011 20 O -0.382 6.382 21 C -0.094 4.094 22 C -0.152 4.152 23 C -0.154 4.154 24 C -0.159 4.159 25 C -0.152 4.152 26 C -0.149 4.149 27 C -0.163 4.163 28 C 0.019 3.981 29 H 0.060 0.940 30 H 0.011 0.989 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.072 0.928 35 H 0.243 0.757 36 H 0.243 0.757 37 H 0.091 0.909 38 H 0.043 0.957 39 H 0.242 0.758 40 H 0.104 0.896 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.086 0.914 46 H 0.076 0.924 47 H 0.083 0.917 48 H 0.088 0.912 49 H 0.089 0.911 50 H 0.078 0.922 51 H 0.083 0.917 52 H 0.076 0.924 53 H 0.024 0.976 54 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.279 -25.838 14.751 29.932 hybrid contribution -0.344 1.298 0.052 1.344 sum 2.935 -24.540 14.803 28.809 Atomic orbital electron populations 1.70160 1.06663 1.25989 1.55477 1.25867 0.96150 1.01580 1.01070 0.85280 0.77468 0.78940 0.78363 1.20305 1.22030 1.20112 1.19496 0.92197 0.85480 1.42155 0.91482 1.44338 1.33434 1.02634 1.52887 1.20584 0.87330 0.97640 0.89221 1.22259 1.01749 0.93760 0.98956 1.20459 0.96835 0.87222 0.87746 1.45145 1.73807 1.04337 1.14957 1.16153 0.77959 0.81510 0.84299 1.90883 1.56505 1.79715 1.24769 1.44935 1.73825 1.05993 1.12780 1.21000 0.93583 0.79041 0.99971 0.90407 1.22549 0.95386 0.99817 0.83383 1.86395 1.33207 1.91703 1.26864 1.21220 0.94138 0.94858 0.99166 1.21566 0.94396 0.99737 0.99456 1.21509 0.99591 0.95160 0.99130 1.21561 0.96734 0.95919 1.01655 1.21486 0.94719 0.99552 0.99396 1.21571 1.00711 0.92965 0.99639 1.22172 0.97749 0.98353 0.97982 1.20963 0.97323 0.86084 0.93740 0.94001 0.98859 0.91533 0.90733 0.91219 0.92803 0.75652 0.75668 0.90878 0.95726 0.75822 0.89636 0.93090 0.92251 0.91574 0.92012 0.91396 0.92444 0.91715 0.91235 0.91063 0.92212 0.91671 0.92443 0.97558 0.92408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.65 11.07 21.65 0.24 -55.41 16 2 C -0.05 -2.89 4.98 84.86 0.42 -2.46 16 3 Si 0.97 44.84 29.58 68.60 2.03 46.86 16 4 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 5 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 6 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 7 C -0.26 -14.61 9.59 84.04 0.81 -13.81 16 8 H 0.07 3.62 7.87 -2.91 -0.02 3.59 16 9 N -0.61 -31.37 2.99 -699.08 -2.09 -33.46 16 10 C 0.18 8.71 5.29 86.36 0.46 9.17 16 11 C -0.13 -4.68 5.55 30.67 0.17 -4.51 16 12 C 0.18 6.49 2.42 45.02 0.11 6.59 16 13 N -0.73 -20.28 5.08 -457.68 -2.33 -22.60 16 14 C 0.70 20.82 8.50 179.06 1.52 22.34 16 15 O -0.64 -24.68 15.67 -4.00 -0.06 -24.74 16 16 N -0.72 -15.30 4.29 -457.80 -1.96 -17.27 16 17 C 0.17 3.27 1.95 44.99 0.09 3.36 16 18 H 0.08 1.84 7.58 -2.38 -0.02 1.83 16 19 C 0.07 1.21 6.43 71.98 0.46 1.67 16 20 O -0.57 -8.77 12.71 -148.98 -1.89 -10.66 16 21 C -0.07 -1.06 1.66 -10.80 -0.02 -1.08 16 22 C -0.11 -1.67 5.02 30.59 0.15 -1.52 16 23 C -0.12 -1.40 5.92 30.60 0.18 -1.22 16 24 C -0.12 -1.31 5.92 30.60 0.18 -1.13 16 25 C -0.11 -1.16 5.92 30.59 0.18 -0.98 16 26 C -0.11 -1.33 4.90 30.59 0.15 -1.18 16 27 C -0.12 -4.54 5.65 30.67 0.17 -4.37 16 28 C 0.15 6.47 6.52 86.36 0.56 7.03 16 29 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 30 H -0.01 -0.36 8.14 -2.39 -0.02 -0.37 16 31 H 0.07 3.61 6.01 -2.39 -0.01 3.60 16 32 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.05 2.23 7.58 -2.38 -0.02 2.22 16 35 H 0.41 8.72 8.62 -92.71 -0.80 7.93 16 36 H 0.41 6.78 8.26 -92.71 -0.77 6.02 16 37 H 0.07 0.99 6.70 -2.39 -0.02 0.98 16 38 H 0.02 0.58 8.14 -2.38 -0.02 0.56 16 39 H 0.39 3.07 9.12 -74.06 -0.68 2.39 16 40 H 0.09 1.26 7.51 -2.38 -0.02 1.24 16 41 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 42 H 0.06 0.91 7.30 -2.39 -0.02 0.90 16 43 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 47 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 48 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 49 H 0.07 0.78 6.58 -2.39 -0.02 0.76 16 50 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 51 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 52 H 0.06 2.11 8.14 -2.39 -0.02 2.10 16 53 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 54 H 0.06 2.50 7.93 -2.39 -0.02 2.48 16 Total: -1.00 -70.92 410.41 -1.81 -72.73 By element: Atomic # 1 Polarization: 28.00 SS G_CDS: -1.34 Total: 26.66 kcal Atomic # 6 Polarization: 12.29 SS G_CDS: 5.60 Total: 17.89 kcal Atomic # 7 Polarization: -122.59 SS G_CDS: -6.14 Total: -128.74 kcal Atomic # 8 Polarization: -33.45 SS G_CDS: -1.96 Total: -35.41 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.86 kcal Total: -70.92 -1.81 -72.73 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609341331.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.573 kcal (2) G-P(sol) polarization free energy of solvation -70.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds