Wall clock time and date at job start Sat Apr 11 2020 05:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47045 * 2 1 4 4 N 1.46505 * 109.46770 * 60.00128 * 3 2 1 5 5 C 1.34778 * 119.99452 * 180.02562 * 4 3 2 6 6 O 1.21587 * 120.00326 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99603 * 179.97438 * 5 4 3 8 8 C 1.46501 * 120.00175 * 179.97438 * 7 5 4 9 9 C 1.53046 * 109.46391 * 275.07568 * 8 7 5 10 10 C 1.53185 * 109.31386 * 178.61320 * 9 8 7 11 11 N 1.46920 * 108.77783 * 54.62934 * 10 9 8 12 12 C 1.36943 * 120.63046 * 126.41232 * 11 10 9 13 13 H 1.08003 * 120.00060 * 331.83232 * 12 11 10 14 14 C 1.38807 * 120.00272 * 151.82513 * 12 11 10 15 15 N 1.31621 * 119.99908 * 343.07871 * 14 12 11 16 16 Si 1.86796 * 120.00441 * 163.07516 * 14 12 11 17 17 H 1.48505 * 109.47164 * 89.99900 * 16 14 12 18 18 H 1.48491 * 109.47477 * 210.00362 * 16 14 12 19 19 H 1.48507 * 109.46950 * 330.00189 * 16 14 12 20 20 C 1.46927 * 118.74156 * 306.39285 * 11 10 9 21 21 C 1.53040 * 109.46185 * 155.00292 * 8 7 5 22 22 C 1.53000 * 109.46850 * 119.99956 * 2 1 3 23 23 C 1.53006 * 109.47014 * 59.99904 * 22 2 1 24 24 C 1.53005 * 109.46613 * 60.00066 * 23 22 2 25 25 C 1.52995 * 109.47064 * 299.99711 * 24 23 22 26 26 C 1.52994 * 109.47280 * 60.00383 * 25 24 23 27 27 H 1.09001 * 109.47474 * 59.99953 * 26 25 24 28 28 O 1.42898 * 109.47198 * 179.97438 * 26 25 24 29 29 H 1.08999 * 109.47160 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47622 * 300.00305 * 1 2 3 31 31 H 1.09004 * 109.46914 * 59.99781 * 1 2 3 32 32 H 1.08998 * 109.47039 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47047 * 299.99859 * 3 2 1 34 34 H 0.96998 * 120.00485 * 359.97438 * 4 3 2 35 35 H 0.97001 * 120.00002 * 0.02562 * 7 5 4 36 36 H 1.09007 * 109.45591 * 35.02931 * 8 7 5 37 37 H 1.09004 * 109.49165 * 298.56632 * 9 8 7 38 38 H 1.09003 * 109.49390 * 58.65439 * 9 8 7 39 39 H 1.09002 * 109.58534 * 294.84033 * 10 9 8 40 40 H 1.08998 * 109.70505 * 174.49443 * 10 9 8 41 41 H 0.96996 * 120.00250 * 179.97438 * 15 14 12 42 42 H 1.08996 * 109.58726 * 293.82122 * 20 11 10 43 43 H 1.09004 * 109.70161 * 173.46580 * 20 11 10 44 44 H 1.09000 * 109.49609 * 301.33675 * 21 8 7 45 45 H 1.08995 * 109.49932 * 61.40722 * 21 8 7 46 46 H 1.09000 * 109.47129 * 179.97438 * 22 2 1 47 47 H 1.08999 * 109.46795 * 300.00245 * 22 2 1 48 48 H 1.08998 * 109.46800 * 179.97438 * 23 22 2 49 49 H 1.08990 * 109.47238 * 299.99880 * 23 22 2 50 50 H 1.09006 * 109.46549 * 179.97438 * 24 23 22 51 51 H 1.08998 * 109.46869 * 60.00145 * 24 23 22 52 52 H 1.09000 * 109.47286 * 300.00370 * 25 24 23 53 53 H 1.09008 * 109.46925 * 180.02562 * 25 24 23 54 54 H 0.96705 * 114.00222 * 300.00081 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.5516 2.1331 1.1963 5 6 1.8768 3.4236 1.4092 6 8 2.5758 4.0145 0.6089 7 7 1.4271 4.0590 2.5095 8 6 1.7810 5.4616 2.7414 9 6 3.1444 5.5360 3.4326 10 6 3.5268 7.0045 3.6422 11 7 2.4427 7.6759 4.3720 12 6 2.7021 8.3690 5.5243 13 1 3.5356 8.0847 6.1495 14 6 1.8939 9.4371 5.8886 15 7 1.1027 9.9974 4.9984 16 14 1.9290 10.0793 7.6424 17 1 2.9604 11.1412 7.7602 18 1 0.5990 10.6401 7.9909 19 1 2.2557 8.9669 8.5704 20 6 1.0751 7.5900 3.8419 21 6 0.7202 6.1149 3.6302 22 6 2.0400 -0.7213 1.2493 23 6 1.5299 -2.1638 1.2492 24 6 2.0400 -2.8850 -0.0001 25 6 1.5300 -2.1637 -1.2492 26 6 2.0400 -0.7212 -1.2492 27 1 3.1300 -0.7212 -1.2492 28 8 1.5642 -0.0478 -2.4162 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 0.9937 1.6618 1.8346 35 1 0.8698 3.5875 3.1481 36 1 1.8287 5.9866 1.7872 37 1 3.0907 5.0326 4.3980 38 1 3.8951 5.0498 2.8096 39 1 3.6694 7.4865 2.6750 40 1 4.4489 7.0653 4.2202 41 1 0.5377 10.7435 5.2531 42 1 1.0178 8.1197 2.8911 43 1 0.3774 8.0356 4.5511 44 1 -0.2545 6.0409 3.1478 45 1 0.6889 5.6058 4.5935 46 1 3.1300 -0.7217 1.2491 47 1 1.6765 -0.2074 2.1392 48 1 1.8935 -2.6777 2.1390 49 1 0.4400 -2.1638 1.2492 50 1 1.6769 -3.9128 0.0002 51 1 3.1300 -2.8850 0.0001 52 1 0.4400 -2.1637 -1.2493 53 1 1.8931 -2.6778 -2.1393 54 1 1.8499 -0.4514 -3.2473 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610500266.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:26 Heat of formation + Delta-G solvation = -104.667004 kcal Electronic energy + Delta-G solvation = -30761.155970 eV Core-core repulsion = 26731.373671 eV Total energy + Delta-G solvation = -4029.782298 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.52431 -40.62604 -39.05224 -36.79240 -36.07815 -35.71067 -33.97661 -32.77135 -31.71030 -30.97589 -30.65024 -28.05306 -27.14875 -26.23224 -24.03397 -23.79723 -23.37854 -22.04697 -21.72614 -21.03693 -19.60553 -19.29443 -18.62557 -18.14789 -17.45602 -16.81227 -16.55853 -16.38486 -15.94191 -15.75960 -15.55411 -15.34918 -15.18866 -14.94459 -14.75758 -14.55515 -14.43735 -14.18849 -14.01535 -13.96196 -13.53895 -13.21331 -13.12870 -13.00378 -12.77501 -12.60446 -12.50658 -12.44964 -12.22839 -12.12451 -12.01794 -12.00094 -11.86588 -11.55819 -11.39872 -11.32177 -11.26072 -11.20762 -10.98748 -10.63484 -10.55388 -10.28774 -9.70813 -8.70362 -7.87142 -5.32973 1.48882 1.49811 1.60194 1.72310 2.19740 2.52679 3.24713 3.27710 3.34109 3.53761 3.66865 3.70273 3.91179 3.96403 4.07551 4.12427 4.22695 4.28903 4.34372 4.35422 4.45077 4.47002 4.47884 4.63758 4.65843 4.78793 4.81172 4.83155 4.87087 4.90663 4.96175 5.04261 5.05895 5.07683 5.14873 5.16738 5.20622 5.20998 5.28714 5.30101 5.38816 5.42013 5.47044 5.52688 5.61836 5.63290 5.65206 5.70681 6.05618 6.39599 6.93292 7.14810 7.15206 7.63756 7.84215 8.37781 9.20164 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.029160 B = 0.001958 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.989496 B =14293.705664 C =14556.699770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.055 4.055 3 C 0.158 3.842 4 N -0.728 5.728 5 C 0.698 3.302 6 O -0.639 6.639 7 N -0.726 5.726 8 C 0.181 3.819 9 C -0.122 4.122 10 C 0.145 3.855 11 N -0.609 5.609 12 C -0.263 4.263 13 H 0.068 0.932 14 C -0.052 4.052 15 N -0.936 5.936 16 Si 0.970 3.030 17 H -0.287 1.287 18 H -0.291 1.291 19 H -0.268 1.268 20 C 0.179 3.821 21 C -0.127 4.127 22 C -0.109 4.109 23 C -0.121 4.121 24 C -0.118 4.118 25 C -0.146 4.146 26 C 0.116 3.884 27 H 0.055 0.945 28 O -0.582 6.582 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.046 0.954 32 H 0.048 0.952 33 H 0.047 0.953 34 H 0.408 0.592 35 H 0.409 0.591 36 H 0.052 0.948 37 H 0.067 0.933 38 H 0.056 0.944 39 H 0.005 0.995 40 H 0.058 0.942 41 H 0.251 0.749 42 H -0.007 1.007 43 H 0.065 0.935 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.063 0.937 47 H 0.073 0.927 48 H 0.072 0.928 49 H 0.072 0.928 50 H 0.074 0.926 51 H 0.063 0.937 52 H 0.072 0.928 53 H 0.076 0.924 54 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.358 -31.511 -9.696 33.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.055 4.055 3 C 0.033 3.967 4 N -0.385 5.385 5 C 0.398 3.602 6 O -0.521 6.521 7 N -0.381 5.381 8 C 0.076 3.924 9 C -0.163 4.163 10 C 0.018 3.982 11 N -0.332 5.332 12 C -0.393 4.393 13 H 0.085 0.915 14 C -0.247 4.247 15 N -0.582 5.582 16 Si 0.798 3.202 17 H -0.214 1.214 18 H -0.217 1.217 19 H -0.193 1.193 20 C 0.052 3.948 21 C -0.166 4.166 22 C -0.146 4.146 23 C -0.158 4.158 24 C -0.155 4.155 25 C -0.183 4.183 26 C 0.057 3.943 27 H 0.073 0.927 28 O -0.390 6.390 29 H 0.095 0.905 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.246 0.754 35 H 0.245 0.755 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.023 0.977 40 H 0.077 0.923 41 H 0.060 0.940 42 H 0.011 0.989 43 H 0.083 0.917 44 H 0.094 0.906 45 H 0.091 0.909 46 H 0.082 0.918 47 H 0.092 0.908 48 H 0.091 0.909 49 H 0.090 0.910 50 H 0.093 0.907 51 H 0.082 0.918 52 H 0.091 0.909 53 H 0.095 0.905 54 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -2.095 -30.477 -9.957 32.130 hybrid contribution -0.067 0.389 0.585 0.705 sum -2.162 -30.088 -9.372 31.588 Atomic orbital electron populations 1.21873 0.93129 1.02758 1.01662 1.20731 0.97285 0.92144 0.95358 1.21082 0.97670 0.91823 0.86120 1.44982 1.56704 1.09732 1.27107 1.16181 0.80099 0.82088 0.81842 1.90896 1.44783 1.67634 1.48749 1.45110 1.55999 1.12821 1.24150 1.20481 0.94473 0.79917 0.97562 1.22172 0.96764 0.97280 1.00048 1.20960 0.91606 0.91366 0.94222 1.44352 1.02702 1.59758 1.26409 1.19513 1.13934 1.07946 0.97902 0.91454 1.25848 1.00729 0.96399 1.01706 1.70190 1.29879 1.24375 1.33773 0.85240 0.76590 0.78104 0.80259 1.21385 1.21740 1.19300 1.20565 0.86651 0.91629 0.95923 1.22249 0.97547 0.97515 0.99315 1.21617 1.00894 0.96206 0.95922 1.21612 1.01499 0.94334 0.98389 1.21501 1.00966 0.99372 0.93673 1.22241 1.02110 0.94562 0.99412 1.21722 0.96743 0.91201 0.84614 0.92714 1.86521 1.77946 1.57676 1.16875 0.90506 0.92294 0.93462 0.93391 0.93425 0.75397 0.75455 0.92950 0.91423 0.92556 0.97715 0.92346 0.94007 0.98901 0.91709 0.90599 0.90937 0.91847 0.90839 0.90930 0.90957 0.90693 0.91817 0.90916 0.90519 0.75845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 7.46 71.98 0.54 -1.28 16 2 C -0.05 -0.76 0.36 -52.18 -0.02 -0.78 16 3 C 0.16 3.42 4.42 86.38 0.38 3.80 16 4 N -0.73 -15.71 4.96 -478.52 -2.37 -18.08 16 5 C 0.70 21.53 8.53 179.05 1.53 23.06 16 6 O -0.64 -26.42 16.01 -3.99 -0.06 -26.48 16 7 N -0.73 -20.25 5.08 -457.66 -2.33 -22.58 16 8 C 0.18 6.48 2.42 45.02 0.11 6.59 16 9 C -0.12 -4.57 5.65 30.67 0.17 -4.40 16 10 C 0.14 6.49 6.52 86.36 0.56 7.06 16 11 N -0.61 -31.38 2.99 -699.12 -2.09 -33.48 16 12 C -0.26 -14.61 9.58 84.03 0.81 -13.80 16 13 H 0.07 3.64 7.89 -2.91 -0.02 3.61 16 14 C -0.05 -2.89 4.92 84.86 0.42 -2.48 16 15 N -0.94 -55.81 11.19 21.65 0.24 -55.56 16 16 Si 0.97 44.81 29.59 68.60 2.03 46.84 16 17 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 18 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 19 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 20 C 0.18 8.72 5.30 86.36 0.46 9.17 16 21 C -0.13 -4.62 5.55 30.67 0.17 -4.45 16 22 C -0.11 -1.16 4.56 30.60 0.14 -1.02 16 23 C -0.12 -0.92 5.65 30.60 0.17 -0.75 16 24 C -0.12 -0.82 5.92 30.59 0.18 -0.64 16 25 C -0.15 -1.18 5.27 30.59 0.16 -1.01 16 26 C 0.12 1.44 2.58 30.59 0.08 1.52 16 27 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 28 O -0.58 -8.61 11.97 -148.98 -1.78 -10.40 16 29 H 0.08 0.79 4.81 -2.39 -0.01 0.78 16 30 H 0.06 0.70 6.86 -2.39 -0.02 0.69 16 31 H 0.05 0.83 7.68 -2.38 -0.02 0.81 16 32 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.05 1.31 7.68 -2.39 -0.02 1.29 16 34 H 0.41 6.08 6.18 -92.71 -0.57 5.51 16 35 H 0.41 8.39 8.62 -92.71 -0.80 7.59 16 36 H 0.05 2.21 7.58 -2.38 -0.02 2.20 16 37 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 38 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 40 H 0.06 2.53 7.93 -2.39 -0.02 2.52 16 41 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 42 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 43 H 0.06 3.50 6.07 -2.38 -0.01 3.49 16 44 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 45 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 46 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.07 0.73 6.86 -2.39 -0.02 0.72 16 48 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 49 H 0.07 0.51 6.43 -2.39 -0.02 0.50 16 50 H 0.07 0.40 8.14 -2.38 -0.02 0.38 16 51 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 52 H 0.07 0.65 6.43 -2.39 -0.02 0.63 16 53 H 0.08 0.45 8.14 -2.38 -0.02 0.43 16 54 H 0.39 2.63 9.08 -74.05 -0.67 1.96 16 Total: -1.00 -74.33 402.04 -1.65 -75.98 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: -1.13 Total: 23.17 kcal Atomic # 6 Polarization: 14.73 SS G_CDS: 5.86 Total: 20.58 kcal Atomic # 7 Polarization: -123.15 SS G_CDS: -6.55 Total: -129.70 kcal Atomic # 8 Polarization: -35.03 SS G_CDS: -1.85 Total: -36.88 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -74.33 -1.65 -75.98 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610500266.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.687 kcal (2) G-P(sol) polarization free energy of solvation -74.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds