Wall clock time and date at job start Sat Apr 11 2020 05:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99992 * 2 1 4 4 H 1.48496 * 109.47255 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47480 * 300.00174 * 3 2 1 6 6 H 1.48505 * 109.47035 * 60.00011 * 3 2 1 7 7 C 1.38806 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00294 * 163.07151 * 7 2 1 9 9 N 1.36940 * 120.00136 * 343.07184 * 7 2 1 10 10 C 1.46929 * 120.62588 * 331.84711 * 9 7 2 11 11 C 1.53199 * 108.77382 * 233.58902 * 10 9 7 12 12 C 1.53042 * 109.31038 * 305.36666 * 11 10 9 13 13 N 1.46504 * 109.45651 * 181.39014 * 12 11 10 14 14 C 1.34773 * 119.99683 * 154.97324 * 13 12 11 15 15 O 1.21583 * 120.00490 * 359.97438 * 14 13 12 16 16 N 1.34781 * 119.99838 * 179.97438 * 14 13 12 17 17 C 1.46495 * 120.00439 * 180.02562 * 16 14 13 18 18 C 1.52995 * 109.47652 * 180.02562 * 17 16 14 19 19 C 1.53008 * 109.47118 * 59.99866 * 18 17 16 20 20 O 1.42903 * 109.46893 * 300.00161 * 19 18 17 21 21 C 1.52997 * 109.47188 * 300.00199 * 18 17 16 22 22 C 1.53002 * 109.47021 * 300.00108 * 21 18 17 23 23 C 1.53002 * 109.46621 * 299.99767 * 22 21 18 24 24 C 1.52997 * 109.47233 * 60.00363 * 23 22 21 25 25 C 1.53002 * 109.47441 * 179.97438 * 18 17 16 26 26 C 1.53033 * 109.52691 * 61.37283 * 12 11 10 27 27 C 1.46919 * 120.63397 * 151.82868 * 9 7 2 28 28 H 0.96996 * 119.99935 * 0.02562 * 1 2 3 29 29 H 1.09002 * 109.58635 * 113.80563 * 10 9 7 30 30 H 1.08998 * 109.70637 * 353.44223 * 10 9 7 31 31 H 1.08998 * 109.49375 * 185.42074 * 11 10 9 32 32 H 1.09001 * 109.49901 * 65.31885 * 11 10 9 33 33 H 1.09005 * 109.45837 * 301.35805 * 12 11 10 34 34 H 0.96998 * 119.99499 * 335.24556 * 13 12 11 35 35 H 0.97005 * 119.99900 * 0.02562 * 16 14 13 36 36 H 1.09004 * 109.47242 * 300.00436 * 17 16 14 37 37 H 1.09001 * 109.47284 * 59.99775 * 17 16 14 38 38 H 1.08995 * 109.46767 * 60.00546 * 19 18 17 39 39 H 1.08998 * 109.47200 * 180.02562 * 19 18 17 40 40 H 0.96700 * 113.99603 * 179.97438 * 20 19 18 41 41 H 1.09004 * 109.47121 * 59.99457 * 21 18 17 42 42 H 1.09000 * 109.47793 * 180.02562 * 21 18 17 43 43 H 1.09001 * 109.47535 * 179.97438 * 22 21 18 44 44 H 1.08998 * 109.47309 * 59.99714 * 22 21 18 45 45 H 1.09000 * 109.47163 * 299.99448 * 23 22 21 46 46 H 1.09008 * 109.47082 * 179.97438 * 23 22 21 47 47 H 1.09004 * 109.47121 * 180.02562 * 24 23 22 48 48 H 1.08998 * 109.47312 * 59.99676 * 24 23 22 49 49 H 1.08997 * 109.46717 * 180.02562 * 25 18 17 50 50 H 1.08992 * 109.47142 * 300.00022 * 25 18 17 51 51 H 1.09004 * 109.49687 * 58.58113 * 26 12 11 52 52 H 1.09002 * 109.49729 * 178.66985 * 26 12 11 53 53 H 1.09001 * 109.58616 * 246.20066 * 27 9 7 54 54 H 1.09004 * 109.58797 * 6.48252 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0551 -1.2223 -0.2729 9 7 1.3701 -2.3625 0.3443 10 6 0.2261 -2.3408 1.2660 11 6 0.4975 -3.3208 2.4118 12 6 0.8121 -4.7020 1.8327 13 7 1.0396 -5.6496 2.9266 14 6 0.8357 -6.9673 2.7300 15 8 0.4624 -7.3696 1.6451 16 7 1.0455 -7.8391 3.7362 17 6 0.8244 -9.2714 3.5226 18 6 1.1318 -10.0332 4.8133 19 6 0.2117 -9.5362 5.9303 20 8 0.4275 -8.1390 6.1387 21 6 2.5901 -9.7960 5.2105 22 6 3.5102 -10.2929 4.0936 23 6 3.2793 -11.7888 3.8704 24 6 1.8209 -12.0260 3.4732 25 6 0.9003 -11.5290 4.5903 26 6 2.0675 -4.6177 0.9617 27 6 1.8138 -3.6527 -0.2008 28 1 -0.4850 0.8400 -0.0004 29 1 -0.6771 -2.6411 0.7346 30 1 0.0967 -1.3359 1.6677 31 1 -0.3831 -3.3862 3.0508 32 1 1.3472 -2.9697 2.9973 33 1 -0.0281 -5.0417 1.2269 34 1 1.3332 -5.3282 3.7934 35 1 1.3429 -7.5181 4.6020 36 1 -0.2147 -9.4405 3.2400 37 1 1.4795 -9.6254 2.7265 38 1 -0.8272 -9.7053 5.6473 39 1 0.4310 -10.0785 6.8499 40 1 -0.1240 -7.7554 6.8343 41 1 2.7547 -8.7302 5.3695 42 1 2.8094 -10.3390 6.1298 43 1 4.5492 -10.1235 4.3763 44 1 3.2912 -9.7502 3.1740 45 1 3.4984 -12.3314 4.7899 46 1 3.9344 -12.1428 3.0743 47 1 1.6563 -13.0918 3.3146 48 1 1.6019 -11.4833 2.5536 49 1 1.1189 -12.0716 5.5100 50 1 -0.1388 -11.6977 4.3076 51 1 2.9023 -4.2542 1.5610 52 1 2.3046 -5.6063 0.5685 53 1 1.0402 -4.0599 -0.8518 54 1 2.7332 -3.5125 -0.7693 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610641099.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:29 Heat of formation + Delta-G solvation = -101.169280 kcal Electronic energy + Delta-G solvation = -31258.469697 eV Core-core repulsion = 27228.839072 eV Total energy + Delta-G solvation = -4029.630626 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.49950 -40.42002 -38.94943 -37.26045 -35.97280 -35.18096 -33.86922 -32.67473 -31.76260 -31.58814 -30.97853 -27.46315 -26.47856 -26.34086 -23.96823 -23.72421 -23.45268 -21.96814 -21.65699 -21.02188 -19.96310 -19.10220 -18.49377 -17.94723 -17.35405 -16.89648 -16.73959 -16.19845 -15.96303 -15.82878 -15.42141 -15.34762 -15.31561 -14.94420 -14.76586 -14.64709 -14.51302 -14.36290 -14.02350 -13.64822 -13.49554 -13.20468 -13.09227 -13.01796 -12.99975 -12.62105 -12.50725 -12.34120 -12.20139 -12.03511 -11.98745 -11.96734 -11.86351 -11.54059 -11.36326 -11.20939 -11.15490 -10.99937 -10.92323 -10.70745 -10.56198 -10.17166 -9.55570 -8.70654 -7.87286 -5.33230 1.48081 1.49643 1.60905 1.84389 2.28576 2.52431 3.16109 3.28359 3.45598 3.65589 3.67855 3.84329 3.92076 4.01332 4.07952 4.09313 4.26783 4.35958 4.37109 4.45939 4.47371 4.52784 4.61850 4.65057 4.65558 4.67509 4.76434 4.81589 4.82958 4.86360 4.89418 5.02883 5.06796 5.07560 5.15165 5.16926 5.18241 5.27420 5.29773 5.31084 5.41676 5.46847 5.47952 5.58072 5.64641 5.66593 5.70809 5.75885 6.22426 6.39603 6.95190 7.14717 7.33354 7.75914 7.83860 8.37658 9.20194 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.024053 B = 0.002214 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.820055 B =12643.185671 C =12981.711066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.051 4.051 3 Si 0.970 3.030 4 H -0.267 1.267 5 H -0.294 1.294 6 H -0.287 1.287 7 C -0.262 4.262 8 H 0.067 0.933 9 N -0.609 5.609 10 C 0.179 3.821 11 C -0.126 4.126 12 C 0.182 3.818 13 N -0.728 5.728 14 C 0.693 3.307 15 O -0.647 6.647 16 N -0.716 5.716 17 C 0.151 3.849 18 C -0.063 4.063 19 C 0.089 3.911 20 O -0.586 6.586 21 C -0.097 4.097 22 C -0.126 4.126 23 C -0.116 4.116 24 C -0.125 4.125 25 C -0.101 4.101 26 C -0.123 4.123 27 C 0.146 3.854 28 H 0.251 0.749 29 H -0.006 1.006 30 H 0.065 0.935 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.052 0.948 34 H 0.407 0.593 35 H 0.415 0.585 36 H 0.042 0.958 37 H 0.053 0.947 38 H 0.047 0.953 39 H 0.070 0.930 40 H 0.398 0.602 41 H 0.059 0.941 42 H 0.079 0.921 43 H 0.064 0.936 44 H 0.042 0.958 45 H 0.075 0.925 46 H 0.058 0.942 47 H 0.076 0.924 48 H 0.048 0.952 49 H 0.089 0.911 50 H 0.070 0.930 51 H 0.065 0.935 52 H 0.054 0.946 53 H 0.006 0.994 54 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.401 -25.439 19.192 32.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.798 3.202 4 H -0.191 1.191 5 H -0.221 1.221 6 H -0.213 1.213 7 C -0.392 4.392 8 H 0.085 0.915 9 N -0.332 5.332 10 C 0.053 3.947 11 C -0.166 4.166 12 C 0.077 3.923 13 N -0.382 5.382 14 C 0.393 3.607 15 O -0.529 6.529 16 N -0.378 5.378 17 C 0.026 3.974 18 C -0.063 4.063 19 C 0.011 3.989 20 O -0.396 6.396 21 C -0.135 4.135 22 C -0.164 4.164 23 C -0.153 4.153 24 C -0.163 4.163 25 C -0.139 4.139 26 C -0.163 4.163 27 C 0.020 3.980 28 H 0.060 0.940 29 H 0.012 0.988 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.243 0.757 35 H 0.259 0.741 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.088 0.912 40 H 0.249 0.751 41 H 0.078 0.922 42 H 0.098 0.902 43 H 0.083 0.917 44 H 0.060 0.940 45 H 0.094 0.906 46 H 0.077 0.923 47 H 0.095 0.905 48 H 0.067 0.933 49 H 0.108 0.892 50 H 0.089 0.911 51 H 0.084 0.916 52 H 0.073 0.927 53 H 0.024 0.976 54 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.408 -25.773 17.783 31.498 hybrid contribution -0.179 1.472 0.411 1.538 sum 3.230 -24.302 18.195 30.530 Atomic orbital electron populations 1.70196 1.06718 1.25906 1.55403 1.25839 0.96078 1.01580 1.01108 0.85167 0.78571 0.79620 0.76815 1.19097 1.22089 1.21323 1.19555 0.92865 0.85794 1.41036 0.91507 1.44354 1.35954 1.02175 1.50732 1.20563 0.87685 0.97719 0.88720 1.22248 1.01870 0.93567 0.98905 1.20451 0.96733 0.87785 0.87374 1.45095 1.73041 1.04411 1.15679 1.16290 0.78382 0.81740 0.84298 1.90864 1.56176 1.78919 1.26986 1.45251 1.72334 1.06154 1.14045 1.21245 0.99542 0.78957 0.97623 1.20893 0.96539 0.95856 0.93056 1.22225 0.97486 0.81830 0.97342 1.86065 1.68080 1.23580 1.61866 1.21451 0.92333 1.01228 0.98473 1.21600 0.99585 0.96634 0.98570 1.21517 0.96308 0.95589 1.01892 1.21608 0.95074 1.01497 0.98101 1.21479 1.00142 0.92027 1.00219 1.22175 0.97981 0.98348 0.97809 1.20950 0.97286 0.85989 0.93819 0.93990 0.98835 0.91696 0.90600 0.91132 0.92997 0.75749 0.74122 0.93981 0.92864 0.93491 0.91207 0.75074 0.92235 0.90244 0.91726 0.93959 0.90593 0.92321 0.90508 0.93325 0.89197 0.91131 0.91636 0.92711 0.97643 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.05 11.19 21.65 0.24 -55.81 16 2 C -0.05 -2.87 4.92 84.86 0.42 -2.45 16 3 Si 0.97 45.13 29.59 68.60 2.03 47.16 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 6 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 7 C -0.26 -14.73 9.58 84.03 0.81 -13.93 16 8 H 0.07 3.66 7.88 -2.91 -0.02 3.64 16 9 N -0.61 -31.79 2.99 -699.09 -2.09 -33.88 16 10 C 0.18 8.86 5.30 86.36 0.46 9.32 16 11 C -0.13 -4.74 5.55 30.67 0.17 -4.57 16 12 C 0.18 6.76 2.42 45.02 0.11 6.87 16 13 N -0.73 -21.86 5.08 -457.68 -2.33 -24.18 16 14 C 0.69 22.68 8.53 179.05 1.53 24.21 16 15 O -0.65 -27.40 16.01 -3.98 -0.06 -27.46 16 16 N -0.72 -17.06 4.62 -478.55 -2.21 -19.27 16 17 C 0.15 3.24 3.87 86.38 0.33 3.58 16 18 C -0.06 -0.81 0.51 -52.18 -0.03 -0.84 16 19 C 0.09 0.86 5.91 71.98 0.43 1.28 16 20 O -0.59 -6.18 9.71 -148.98 -1.45 -7.63 16 21 C -0.10 -1.24 4.42 30.59 0.14 -1.11 16 22 C -0.13 -1.87 5.65 30.60 0.17 -1.70 16 23 C -0.12 -1.37 5.92 30.59 0.18 -1.19 16 24 C -0.13 -1.51 5.65 30.61 0.17 -1.33 16 25 C -0.10 -0.99 4.74 30.61 0.14 -0.85 16 26 C -0.12 -4.77 5.65 30.67 0.17 -4.59 16 27 C 0.15 6.67 6.52 86.36 0.56 7.23 16 28 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 29 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 30 H 0.06 3.54 6.07 -2.39 -0.01 3.53 16 31 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.05 2.25 7.58 -2.38 -0.02 2.23 16 34 H 0.41 9.60 8.61 -92.71 -0.80 8.81 16 35 H 0.42 8.18 4.71 -92.70 -0.44 7.74 16 36 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 37 H 0.05 1.33 4.81 -2.39 -0.01 1.32 16 38 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 40 H 0.40 1.29 9.12 -74.06 -0.68 0.61 16 41 H 0.06 0.90 6.49 -2.38 -0.02 0.89 16 42 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.04 0.85 6.43 -2.39 -0.02 0.83 16 45 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 47 H 0.08 0.74 8.14 -2.38 -0.02 0.72 16 48 H 0.05 0.79 6.43 -2.39 -0.02 0.78 16 49 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 50 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 51 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 52 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 53 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 54 H 0.06 2.56 7.93 -2.38 -0.02 2.54 16 Total: -1.00 -73.80 400.29 -1.11 -74.90 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: -1.00 Total: 26.22 kcal Atomic # 6 Polarization: 14.19 SS G_CDS: 5.76 Total: 19.95 kcal Atomic # 7 Polarization: -126.76 SS G_CDS: -6.39 Total: -133.15 kcal Atomic # 8 Polarization: -33.58 SS G_CDS: -1.51 Total: -35.09 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -73.80 -1.11 -74.90 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610641099.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.264 kcal (2) G-P(sol) polarization free energy of solvation -73.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds