Wall clock time and date at job start Sat Apr 11 2020 05:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47300 * 2 1 4 4 C 1.52997 * 109.45708 * 304.29495 * 3 2 1 5 5 O 1.42901 * 109.47239 * 305.25704 * 4 3 2 6 6 C 1.53046 * 109.45720 * 184.34004 * 3 2 1 7 7 C 1.53191 * 109.31102 * 301.33974 * 6 3 2 8 8 N 1.46928 * 108.77782 * 305.36870 * 7 6 3 9 9 C 1.34780 * 120.62981 * 233.58839 * 8 7 6 10 10 O 1.21588 * 119.99907 * 174.97124 * 9 8 7 11 11 N 1.34772 * 120.00332 * 354.97161 * 9 8 7 12 12 C 1.46498 * 120.00401 * 184.95261 * 11 9 8 13 13 C 1.53042 * 109.45683 * 275.02976 * 12 11 9 14 14 C 1.53193 * 109.31063 * 178.59871 * 13 12 11 15 15 N 1.46932 * 108.76566 * 54.65339 * 14 13 12 16 16 C 1.36933 * 120.62856 * 126.35834 * 15 14 13 17 17 H 1.07993 * 120.00855 * 324.16273 * 16 15 14 18 18 C 1.38816 * 119.99663 * 144.16354 * 16 15 14 19 19 N 1.31621 * 120.00127 * 359.32435 * 18 16 15 20 20 Si 1.86800 * 120.00180 * 179.32772 * 18 16 15 21 21 H 1.48500 * 109.47400 * 89.99635 * 20 18 16 22 22 H 1.48500 * 109.47226 * 210.00213 * 20 18 16 23 23 H 1.48508 * 109.46791 * 329.99961 * 20 18 16 24 24 C 1.46924 * 118.73783 * 306.38696 * 15 14 13 25 25 C 1.53036 * 109.46134 * 154.97137 * 12 11 9 26 26 C 1.46929 * 118.73799 * 53.60678 * 8 7 6 27 27 C 1.53035 * 109.45882 * 64.27059 * 3 2 1 28 28 H 1.08999 * 109.46824 * 295.42159 * 1 2 3 29 29 H 1.09000 * 109.46991 * 55.41873 * 1 2 3 30 30 H 1.08994 * 109.47212 * 175.41903 * 1 2 3 31 31 H 1.09007 * 109.47221 * 119.99923 * 2 1 3 32 32 H 1.09003 * 109.47242 * 239.99517 * 2 1 3 33 33 H 1.09003 * 109.47172 * 65.26091 * 4 3 2 34 34 H 1.09004 * 109.46823 * 185.26083 * 4 3 2 35 35 H 0.96698 * 113.99976 * 179.97438 * 5 4 3 36 36 H 1.08991 * 109.50145 * 61.29338 * 6 3 2 37 37 H 1.09005 * 109.49186 * 181.39659 * 6 3 2 38 38 H 1.09005 * 109.58979 * 185.58294 * 7 6 3 39 39 H 1.08998 * 109.70433 * 65.22582 * 7 6 3 40 40 H 0.97001 * 119.99684 * 4.94988 * 11 9 8 41 41 H 1.08998 * 109.45574 * 34.99495 * 12 11 9 42 42 H 1.09003 * 109.49588 * 298.56152 * 13 12 11 43 43 H 1.08996 * 109.50427 * 58.65828 * 13 12 11 44 44 H 1.08994 * 109.59817 * 294.86355 * 14 13 12 45 45 H 1.08997 * 109.70420 * 174.49898 * 14 13 12 46 46 H 0.96999 * 119.99959 * 180.02562 * 19 18 16 47 47 H 1.09001 * 109.58440 * 293.81878 * 24 15 14 48 48 H 1.08996 * 109.70229 * 173.46576 * 24 15 14 49 49 H 1.08993 * 109.49942 * 301.33502 * 25 12 11 50 50 H 1.08998 * 109.49720 * 61.43823 * 25 12 11 51 51 H 1.09001 * 109.58491 * 186.60471 * 26 8 7 52 52 H 1.09003 * 109.69988 * 66.25000 * 26 8 7 53 53 H 1.09003 * 109.49159 * 178.60795 * 27 3 2 54 54 H 1.08997 * 109.49901 * 298.66647 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4436 2.1940 -1.1918 5 8 1.7327 1.4822 -2.3968 6 6 3.5666 1.4435 -0.1092 7 6 4.1591 0.6609 1.0669 8 7 3.6434 1.2283 2.3203 9 6 4.4876 1.6226 3.2942 10 8 4.0546 2.1740 4.2876 11 7 5.8116 1.4057 3.1669 12 6 6.7173 1.7350 4.2703 13 6 7.1000 3.2147 4.1914 14 6 8.0189 3.5636 5.3665 15 7 9.1641 2.6431 5.3605 16 6 10.4461 3.1243 5.3700 17 1 10.6871 4.0297 4.8330 18 6 11.4360 2.4483 6.0701 19 7 11.1396 1.3521 6.7356 20 14 13.1887 3.0944 6.0677 21 1 13.3722 4.0321 7.2044 22 1 14.1352 1.9584 6.2052 23 1 13.4520 3.8064 4.7913 24 6 8.9076 1.1965 5.3435 25 6 7.9785 0.8742 4.1690 26 6 2.1899 1.3573 2.4919 27 6 1.6194 2.1320 1.2999 28 1 -0.3633 0.4412 0.9282 29 1 -0.3633 0.5833 -0.8461 30 1 -0.3633 -1.0243 -0.0821 31 1 1.8934 -0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 0.3637 2.2741 -1.0673 34 1 1.8781 3.1922 -1.2463 35 1 1.3835 1.9019 -3.1949 36 1 3.8646 0.9731 -1.0461 37 1 3.9324 2.4700 -0.0843 38 1 5.2460 0.7419 1.0493 39 1 3.8695 -0.3874 0.9940 40 1 6.1649 1.0315 2.3447 41 1 6.2191 1.5390 5.2198 42 1 7.6204 3.4063 3.2530 43 1 6.1994 3.8266 4.2400 44 1 7.4708 3.4589 6.3028 45 1 8.3739 4.5890 5.2635 46 1 11.8313 0.8800 7.2251 47 1 8.4320 0.8988 6.2780 48 1 9.8477 0.6580 5.2243 49 1 7.7031 -0.1799 4.2016 50 1 8.4905 1.0881 3.2309 51 1 1.9774 1.8977 3.4144 52 1 1.7357 0.3673 2.5355 53 1 2.0036 3.1520 1.3114 54 1 0.5316 2.1522 1.3655 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611209704.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:33 Heat of formation + Delta-G solvation = -85.739251 kcal Electronic energy + Delta-G solvation = -31294.960743 eV Core-core repulsion = 27265.999213 eV Total energy + Delta-G solvation = -4028.961529 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.79182 -40.25638 -38.95768 -37.21309 -36.03229 -35.18327 -33.85319 -32.22533 -31.84768 -31.48895 -30.75117 -28.22183 -26.80131 -25.04009 -24.41241 -23.92943 -23.78699 -23.20855 -21.20492 -20.99658 -19.62857 -18.73771 -18.42603 -18.14670 -17.43256 -16.86931 -16.59391 -16.24376 -16.06414 -15.87950 -15.51486 -15.34381 -15.32017 -15.00575 -14.78418 -14.62445 -14.37896 -14.12509 -14.02114 -13.63609 -13.42125 -13.22138 -13.20412 -12.96620 -12.83887 -12.73843 -12.66564 -12.48340 -12.21423 -12.13762 -12.00054 -11.90583 -11.87546 -11.59816 -11.44780 -11.36303 -11.29262 -11.16257 -11.02525 -10.71326 -10.55722 -10.11549 -9.42882 -8.57257 -7.87224 -5.43681 1.48145 1.49411 1.58483 1.64410 2.14789 2.50611 2.91922 3.30636 3.32624 3.67443 3.68650 3.76084 3.90508 3.98110 4.08137 4.14361 4.17618 4.29464 4.34137 4.37941 4.47425 4.50433 4.58058 4.63920 4.66083 4.66569 4.72855 4.78199 4.83772 4.85160 4.88506 4.93738 5.02025 5.03045 5.06146 5.08114 5.16396 5.17489 5.30078 5.30774 5.37316 5.42903 5.50367 5.56993 5.61043 5.65125 5.66121 5.75960 5.97766 6.45208 6.97421 6.99189 7.17690 7.58714 7.83024 8.39794 9.18741 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.026665 B = 0.002165 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1049.825481 B =12932.017500 C =13206.919059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.107 4.107 3 C -0.052 4.052 4 C 0.087 3.913 5 O -0.582 6.582 6 C -0.114 4.114 7 C 0.107 3.893 8 N -0.624 5.624 9 C 0.701 3.299 10 O -0.635 6.635 11 N -0.729 5.729 12 C 0.182 3.818 13 C -0.122 4.122 14 C 0.146 3.854 15 N -0.610 5.610 16 C -0.266 4.266 17 H 0.065 0.935 18 C -0.045 4.045 19 N -0.935 5.935 20 Si 0.972 3.028 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.268 1.268 24 C 0.180 3.820 25 C -0.128 4.128 26 C 0.128 3.872 27 C -0.117 4.117 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.042 0.958 35 H 0.393 0.607 36 H 0.087 0.913 37 H 0.055 0.945 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.405 0.595 41 H 0.054 0.946 42 H 0.062 0.938 43 H 0.055 0.945 44 H 0.007 0.993 45 H 0.057 0.943 46 H 0.252 0.748 47 H -0.007 1.007 48 H 0.068 0.932 49 H 0.075 0.925 50 H 0.068 0.932 51 H 0.071 0.929 52 H 0.081 0.919 53 H 0.057 0.943 54 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.669 -2.868 -20.522 30.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.144 4.144 3 C -0.052 4.052 4 C 0.010 3.990 5 O -0.390 6.390 6 C -0.153 4.153 7 C -0.015 4.015 8 N -0.362 5.362 9 C 0.403 3.597 10 O -0.517 6.517 11 N -0.385 5.385 12 C 0.077 3.923 13 C -0.163 4.163 14 C 0.020 3.980 15 N -0.334 5.334 16 C -0.397 4.397 17 H 0.082 0.918 18 C -0.240 4.240 19 N -0.580 5.580 20 Si 0.799 3.201 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.192 1.192 24 C 0.054 3.946 25 C -0.168 4.168 26 C 0.005 3.995 27 C -0.155 4.155 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.060 0.940 35 H 0.242 0.758 36 H 0.106 0.894 37 H 0.074 0.926 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.244 0.756 41 H 0.072 0.928 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.025 0.975 45 H 0.076 0.924 46 H 0.061 0.939 47 H 0.011 0.989 48 H 0.087 0.913 49 H 0.093 0.907 50 H 0.086 0.914 51 H 0.089 0.911 52 H 0.099 0.901 53 H 0.075 0.925 54 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -22.576 -2.991 -19.301 29.852 hybrid contribution 0.965 0.593 -0.124 1.140 sum -21.611 -2.398 -19.424 29.156 Atomic orbital electron populations 1.21843 0.95289 1.01806 1.01970 1.21505 0.96435 0.94745 1.01758 1.20533 0.94830 0.96467 0.93399 1.22179 0.98959 0.93574 0.84317 1.86426 1.81551 1.53798 1.17228 1.21867 0.95005 1.00413 0.97992 1.21854 0.98957 0.98259 0.82420 1.47318 1.06331 1.66038 1.16464 1.16078 0.81685 0.78923 0.83055 1.90872 1.77468 1.50186 1.33133 1.45360 1.04715 1.68857 1.19614 1.20492 0.88759 0.94418 0.88681 1.22170 0.98394 0.96230 0.99480 1.20962 0.88332 0.93966 0.94733 1.44252 1.01352 1.01403 1.86402 1.19457 0.85987 1.09470 1.24743 0.91784 1.26094 1.02997 0.98297 0.96651 1.70091 1.33454 1.19033 1.35412 0.85218 0.79508 0.77253 0.78103 1.21313 1.21722 1.19232 1.20596 0.96983 0.84645 0.92378 1.22285 0.94813 0.98864 1.00835 1.21519 0.77859 1.01117 0.99005 1.21894 1.01918 0.98701 0.93006 0.92332 0.92233 0.92847 0.92101 0.91810 0.92168 0.93984 0.75763 0.89405 0.92595 0.89943 0.89731 0.75640 0.92817 0.91896 0.92605 0.97538 0.92444 0.93904 0.98893 0.91341 0.90694 0.91373 0.91092 0.90086 0.92453 0.88581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.21 71.98 0.66 -0.85 16 2 C -0.11 -1.28 3.95 30.59 0.12 -1.15 16 3 C -0.05 -0.65 0.38 -52.15 -0.02 -0.67 16 4 C 0.09 0.89 5.27 71.98 0.38 1.27 16 5 O -0.58 -6.10 12.38 -148.98 -1.84 -7.94 16 6 C -0.11 -1.64 4.82 30.67 0.15 -1.49 16 7 C 0.11 1.72 5.92 86.36 0.51 2.23 16 8 N -0.62 -14.02 2.97 -836.90 -2.49 -16.51 16 9 C 0.70 21.91 8.26 179.05 1.48 23.39 16 10 O -0.63 -25.60 15.42 -3.99 -0.06 -25.66 16 11 N -0.73 -21.25 4.99 -457.70 -2.28 -23.53 16 12 C 0.18 6.60 2.38 45.02 0.11 6.70 16 13 C -0.12 -4.67 5.65 30.67 0.17 -4.49 16 14 C 0.15 6.61 6.52 86.36 0.56 7.17 16 15 N -0.61 -31.58 2.98 -699.11 -2.09 -33.67 16 16 C -0.27 -14.81 9.55 84.03 0.80 -14.01 16 17 H 0.06 3.47 7.83 -2.91 -0.02 3.45 16 18 C -0.04 -2.50 5.23 84.86 0.44 -2.06 16 19 N -0.93 -55.25 10.86 21.65 0.24 -55.01 16 20 Si 0.97 44.80 29.55 68.60 2.03 46.83 16 21 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 22 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 23 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 24 C 0.18 8.83 5.22 86.36 0.45 9.28 16 25 C -0.13 -4.75 5.55 30.67 0.17 -4.58 16 26 C 0.13 2.47 5.97 86.36 0.52 2.98 16 27 C -0.12 -1.65 4.61 30.67 0.14 -1.51 16 28 H 0.06 0.54 6.80 -2.39 -0.02 0.52 16 29 H 0.06 0.56 6.21 -2.39 -0.01 0.54 16 30 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.78 5.00 -2.38 -0.01 0.77 16 32 H 0.06 0.87 7.70 -2.39 -0.02 0.85 16 33 H 0.06 0.48 6.57 -2.39 -0.02 0.46 16 34 H 0.04 0.44 8.14 -2.38 -0.02 0.42 16 35 H 0.39 1.04 9.12 -74.06 -0.68 0.37 16 36 H 0.09 1.21 7.79 -2.39 -0.02 1.19 16 37 H 0.06 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.08 1.23 5.64 -2.38 -0.01 1.22 16 39 H 0.08 1.16 6.80 -2.39 -0.02 1.14 16 40 H 0.41 9.33 6.09 -92.71 -0.56 8.77 16 41 H 0.05 2.26 7.65 -2.39 -0.02 2.24 16 42 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.06 2.13 8.09 -2.39 -0.02 2.11 16 44 H 0.01 0.31 8.14 -2.39 -0.02 0.30 16 45 H 0.06 2.51 7.93 -2.39 -0.02 2.49 16 46 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 47 H -0.01 -0.38 8.14 -2.39 -0.02 -0.39 16 48 H 0.07 3.73 6.13 -2.39 -0.01 3.72 16 49 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 50 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 51 H 0.07 1.74 7.00 -2.39 -0.02 1.72 16 52 H 0.08 1.32 6.60 -2.39 -0.02 1.30 16 53 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 54 H 0.10 1.01 6.71 -2.39 -0.02 0.99 16 Total: -1.00 -71.95 396.23 -0.18 -72.14 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: -0.33 Total: 21.17 kcal Atomic # 6 Polarization: 15.55 SS G_CDS: 6.65 Total: 22.19 kcal Atomic # 7 Polarization: -122.10 SS G_CDS: -6.62 Total: -128.72 kcal Atomic # 8 Polarization: -31.70 SS G_CDS: -1.91 Total: -33.60 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.83 kcal Total: -71.95 -0.18 -72.14 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611209704.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.603 kcal (2) G-P(sol) polarization free energy of solvation -71.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds