Wall clock time and date at job start Sat Apr 11 2020 05:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86794 * 119.99786 * 2 1 4 4 H 1.48498 * 109.47126 * 239.99830 * 3 2 1 5 5 H 1.48493 * 109.47553 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46880 * 120.00212 * 3 2 1 7 7 C 1.38946 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99746 * 179.97438 * 7 2 1 9 9 N 1.37099 * 120.00306 * 359.97438 * 7 2 1 10 10 C 1.34780 * 120.00107 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99609 * 359.97438 * 10 9 7 12 12 C 1.50694 * 120.00022 * 180.02562 * 10 9 7 13 13 N 1.46901 * 109.47108 * 179.97438 * 12 10 9 14 14 C 1.46902 * 110.99984 * 180.02562 * 13 12 10 15 15 C 1.52996 * 109.47308 * 179.97438 * 14 13 12 16 16 C 1.52992 * 109.47231 * 179.97438 * 15 14 13 17 17 N 1.46506 * 109.47161 * 179.97438 * 16 15 14 18 18 C 1.34773 * 119.99968 * 179.97438 * 17 16 15 19 19 O 1.21283 * 120.00360 * 359.73034 * 18 17 16 20 20 C 1.50706 * 120.00081 * 180.02562 * 18 17 16 21 21 C 1.53014 * 109.46882 * 299.72845 * 20 18 17 22 22 C 1.52991 * 109.46034 * 164.04647 * 21 20 18 23 23 C 1.52989 * 109.50626 * 315.98336 * 22 21 20 24 24 C 1.53005 * 109.46557 * 112.94043 * 23 22 21 25 25 C 1.53007 * 109.43118 * 284.04046 * 24 23 22 26 26 C 1.52991 * 109.48598 * 75.96225 * 25 24 23 27 27 C 1.52992 * 109.50474 * 247.06491 * 26 25 24 28 28 H 0.96996 * 119.99774 * 0.02562 * 1 2 3 29 29 H 0.96999 * 119.99857 * 359.97438 * 9 7 2 30 30 H 1.09002 * 109.47147 * 59.99682 * 12 10 9 31 31 H 1.09008 * 109.46915 * 299.99752 * 12 10 9 32 32 H 1.00897 * 111.00048 * 56.04591 * 13 12 10 33 33 H 1.08999 * 109.47390 * 59.99216 * 14 13 12 34 34 H 1.09010 * 109.46967 * 300.00086 * 14 13 12 35 35 H 1.09004 * 109.46699 * 59.99711 * 15 14 13 36 36 H 1.08993 * 109.47124 * 299.99862 * 15 14 13 37 37 H 1.09004 * 109.47116 * 60.00455 * 16 15 14 38 38 H 1.08998 * 109.47794 * 300.00366 * 16 15 14 39 39 H 0.96998 * 119.99507 * 0.02562 * 17 16 15 40 40 H 1.08998 * 109.47012 * 59.72084 * 20 18 17 41 41 H 1.09006 * 109.47161 * 284.04187 * 21 20 18 42 42 H 1.09005 * 109.47439 * 44.04373 * 21 20 18 43 43 H 1.09006 * 109.46362 * 195.97820 * 22 21 20 44 44 H 1.08996 * 109.45727 * 75.99416 * 22 21 20 45 45 H 1.08998 * 109.47344 * 352.94027 * 23 22 21 46 46 H 1.09003 * 109.47098 * 232.93591 * 23 22 21 47 47 H 1.09003 * 109.47957 * 164.05630 * 24 23 22 48 48 H 1.08995 * 109.48746 * 44.03166 * 24 23 22 49 49 H 1.09006 * 109.46727 * 315.95936 * 25 24 23 50 50 H 1.08998 * 109.46763 * 195.96752 * 25 24 23 51 51 H 1.08997 * 109.46353 * 127.05556 * 26 25 24 52 52 H 1.09003 * 109.46203 * 7.07660 * 26 25 24 53 53 H 1.08996 * 109.47799 * 284.01480 * 27 26 25 54 54 H 1.08999 * 109.47104 * 164.00760 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2832 2.7464 0.0006 6 1 3.1019 1.6963 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3907 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2102 -3.5578 -0.0010 12 6 1.2438 -4.8629 -0.0011 13 7 2.1984 -5.9795 -0.0016 14 6 1.4981 -7.2708 -0.0028 15 6 2.5230 -8.4068 -0.0039 16 6 1.7936 -9.7517 -0.0045 17 7 2.7750 -10.8395 -0.0062 18 6 2.3598 -12.1217 -0.0065 19 8 1.1737 -12.3751 -0.0004 20 6 3.3693 -13.2407 -0.0077 21 6 4.2412 -13.1396 -1.2610 22 6 5.4934 -14.0000 -1.0815 23 6 6.0661 -13.7825 0.3204 24 6 5.9207 -15.0690 1.1358 25 6 4.4653 -15.2285 1.5800 26 6 3.6179 -15.6938 0.3942 27 6 2.6398 -14.5857 -0.0008 28 1 -0.4849 0.8400 -0.0004 29 1 0.3534 -2.3906 0.0002 30 1 0.6174 -4.9205 -0.8913 31 1 0.6168 -4.9209 0.8887 32 1 2.8333 -5.9128 0.7797 33 1 0.8734 -7.3446 -0.8930 34 1 0.8729 -7.3459 0.8870 35 1 3.1479 -8.3332 0.8861 36 1 3.1478 -8.3316 -0.8938 37 1 1.1684 -9.8256 -0.8944 38 1 1.1690 -9.8268 0.8855 39 1 3.7236 -10.6368 -0.0064 40 1 3.9980 -13.1637 0.8794 41 1 3.6782 -13.4931 -2.1249 42 1 4.5332 -12.1011 -1.4178 43 1 6.2380 -13.7175 -1.8258 44 1 5.2332 -15.0508 -1.2086 45 1 5.5230 -12.9764 0.8137 46 1 7.1206 -13.5173 0.2450 47 1 6.5650 -15.0178 2.0135 48 1 6.2092 -15.9227 0.5226 49 1 4.0890 -14.2716 1.9420 50 1 4.4083 -15.9672 2.3794 51 1 3.0603 -16.5874 0.6748 52 1 4.2687 -15.9219 -0.4499 53 1 1.8205 -14.5510 0.7172 54 1 2.2430 -14.7889 -0.9955 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162256788.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:38 Heat of formation + Delta-G solvation = -117.203855 kcal Electronic energy + Delta-G solvation = -28856.415200 eV Core-core repulsion = 24826.089263 eV Total energy + Delta-G solvation = -4030.325937 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.48129 -40.16542 -39.36009 -37.63600 -36.12980 -35.65415 -34.05406 -33.67127 -33.28525 -32.24947 -28.94471 -27.93494 -26.82231 -26.32876 -24.53726 -23.01976 -22.59771 -21.92118 -21.56844 -21.07444 -20.03847 -19.87819 -18.38288 -17.87066 -17.29434 -17.03789 -16.76826 -16.47503 -16.12857 -16.00275 -15.83119 -15.28076 -15.10749 -15.03563 -14.96191 -14.87151 -14.50796 -14.25105 -14.11114 -13.69296 -13.55450 -13.37319 -13.19072 -12.88090 -12.83695 -12.71736 -12.57399 -12.43400 -12.42674 -12.25684 -12.11978 -11.99970 -11.95302 -11.85530 -11.65381 -11.50115 -11.27705 -10.95048 -10.71511 -10.53042 -10.35697 -10.09679 -10.02132 -9.34657 -8.46625 -5.95830 1.40310 1.42290 1.53365 1.63162 2.04647 2.16123 2.30269 2.94445 3.20561 3.51822 3.59659 3.74488 3.83985 3.99663 4.03997 4.13497 4.15400 4.17522 4.24252 4.27975 4.33219 4.34098 4.38581 4.43852 4.48465 4.55606 4.58270 4.69409 4.77201 4.80505 4.87078 4.98086 5.00909 5.03944 5.07719 5.14596 5.15554 5.20184 5.25754 5.29565 5.40429 5.40543 5.41456 5.47157 5.50230 5.62398 5.67696 5.87633 6.08881 6.40291 6.54965 6.59586 7.11967 7.25260 7.55606 8.10601 8.70461 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.028017 B = 0.001381 C = 0.001341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.139373 B =20268.437358 C =20878.297777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.012 4.012 3 Si 0.994 3.006 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.337 4.337 8 H 0.080 0.920 9 N -0.573 5.573 10 C 0.437 3.563 11 O -0.623 6.623 12 C 0.064 3.936 13 N -0.683 5.683 14 C 0.063 3.937 15 C -0.114 4.114 16 C 0.126 3.874 17 N -0.719 5.719 18 C 0.509 3.491 19 O -0.588 6.588 20 C -0.117 4.117 21 C -0.107 4.107 22 C -0.123 4.123 23 C -0.130 4.130 24 C -0.119 4.119 25 C -0.130 4.130 26 C -0.122 4.122 27 C -0.098 4.098 28 H 0.278 0.722 29 H 0.396 0.604 30 H 0.103 0.897 31 H 0.067 0.933 32 H 0.346 0.654 33 H 0.077 0.923 34 H 0.040 0.960 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.414 0.586 40 H 0.133 0.867 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.070 0.930 46 H 0.067 0.933 47 H 0.063 0.937 48 H 0.069 0.931 49 H 0.064 0.936 50 H 0.062 0.938 51 H 0.062 0.938 52 H 0.083 0.917 53 H 0.050 0.950 54 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.262 -32.498 1.162 33.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.212 4.212 3 Si 0.818 3.182 4 H -0.197 1.197 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.467 4.467 8 H 0.098 0.902 9 N -0.210 5.210 10 C 0.224 3.776 11 O -0.510 6.510 12 C -0.068 4.068 13 N -0.315 5.315 14 C -0.067 4.067 15 C -0.153 4.153 16 C 0.001 3.999 17 N -0.372 5.372 18 C 0.297 3.703 19 O -0.469 6.469 20 C -0.137 4.137 21 C -0.145 4.145 22 C -0.160 4.160 23 C -0.168 4.168 24 C -0.156 4.156 25 C -0.167 4.167 26 C -0.159 4.159 27 C -0.136 4.136 28 H 0.087 0.913 29 H 0.230 0.770 30 H 0.121 0.879 31 H 0.084 0.916 32 H 0.164 0.836 33 H 0.096 0.904 34 H 0.059 0.941 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.251 0.749 40 H 0.150 0.850 41 H 0.081 0.919 42 H 0.091 0.909 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.088 0.912 46 H 0.085 0.915 47 H 0.082 0.918 48 H 0.087 0.913 49 H 0.082 0.918 50 H 0.081 0.919 51 H 0.081 0.919 52 H 0.101 0.899 53 H 0.069 0.931 54 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.152 -32.486 0.479 33.497 hybrid contribution -0.494 1.177 0.861 1.540 sum 7.658 -31.310 1.340 32.260 Atomic orbital electron populations 1.69671 1.06865 1.29391 1.50165 1.26055 0.96546 1.02456 0.96168 0.84970 0.77742 0.76544 0.78970 1.19713 1.19509 1.19628 1.19660 0.92779 0.84059 1.50162 0.90215 1.41937 1.09347 1.04739 1.64980 1.20877 0.88274 0.86170 0.82250 1.90482 1.15804 1.87971 1.56713 1.21536 0.94064 0.88148 1.03100 1.60049 1.19154 1.00889 1.51442 1.21906 0.95853 0.87382 1.01517 1.21579 0.98300 0.91359 1.04018 1.21174 0.91491 0.85440 1.01762 1.45975 1.11146 1.05236 1.74798 1.21360 0.89842 0.84653 0.74446 1.90679 1.19981 1.84657 1.51543 1.21942 0.96105 0.92449 1.03229 1.21638 0.96115 1.01426 0.95336 1.21842 0.96005 1.00763 0.97414 1.21852 1.01320 0.98058 0.95521 1.21718 0.95821 0.98073 0.99994 1.21839 0.95532 1.01505 0.97810 1.21858 0.97760 0.97244 0.99079 1.21408 0.97631 0.92962 1.01630 0.91284 0.76975 0.87888 0.91559 0.83576 0.90410 0.94139 0.90380 0.90226 0.92216 0.92181 0.74905 0.84975 0.91935 0.90904 0.91164 0.90412 0.91162 0.91453 0.91832 0.91264 0.91754 0.91909 0.91923 0.89862 0.93115 0.92428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.71 13.05 21.66 0.28 -49.43 16 2 C -0.01 -0.66 5.50 84.92 0.47 -0.20 16 3 Si 0.99 42.82 29.55 68.60 2.03 44.84 16 4 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 5 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 6 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 7 C -0.34 -19.20 9.68 84.04 0.81 -18.38 16 8 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 9 N -0.57 -29.49 5.29 -306.99 -1.62 -31.11 16 10 C 0.44 20.77 7.82 87.65 0.69 21.46 16 11 O -0.62 -34.41 15.78 -3.07 -0.05 -34.45 16 12 C 0.06 2.17 6.17 85.55 0.53 2.70 16 13 N -0.68 -20.68 6.12 -517.92 -3.17 -23.85 16 14 C 0.06 1.35 5.69 86.30 0.49 1.84 16 15 C -0.11 -1.95 5.59 30.59 0.17 -1.78 16 16 C 0.13 2.22 5.67 86.38 0.49 2.71 16 17 N -0.72 -11.03 5.32 -463.05 -2.46 -13.49 16 18 C 0.51 9.87 7.14 87.66 0.63 10.50 16 19 O -0.59 -16.84 15.68 -3.04 -0.05 -16.89 16 20 C -0.12 -1.48 1.93 -11.53 -0.02 -1.51 16 21 C -0.11 -1.04 5.04 30.60 0.15 -0.89 16 22 C -0.12 -0.86 5.48 30.59 0.17 -0.70 16 23 C -0.13 -0.85 5.47 30.59 0.17 -0.68 16 24 C -0.12 -0.79 5.59 30.60 0.17 -0.62 16 25 C -0.13 -1.11 5.47 30.59 0.17 -0.94 16 26 C -0.12 -1.19 5.48 30.59 0.17 -1.02 16 27 C -0.10 -1.42 4.60 30.59 0.14 -1.28 16 28 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 29 H 0.40 19.37 7.90 -92.71 -0.73 18.64 16 30 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 31 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 32 H 0.35 10.81 8.43 -89.70 -0.76 10.05 16 33 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 35 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.41 4.11 7.83 -92.71 -0.73 3.38 16 40 H 0.13 1.33 2.83 -2.39 -0.01 1.32 16 41 H 0.06 0.72 7.82 -2.38 -0.02 0.70 16 42 H 0.07 0.62 7.22 -2.38 -0.02 0.60 16 43 H 0.07 0.44 8.14 -2.38 -0.02 0.42 16 44 H 0.08 0.53 4.69 -2.39 -0.01 0.52 16 45 H 0.07 0.46 5.47 -2.39 -0.01 0.45 16 46 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 47 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 48 H 0.07 0.42 7.47 -2.39 -0.02 0.40 16 49 H 0.06 0.63 5.47 -2.38 -0.01 0.62 16 50 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 51 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 52 H 0.08 0.66 4.69 -2.39 -0.01 0.65 16 53 H 0.05 0.96 7.51 -2.39 -0.02 0.94 16 54 H 0.06 0.92 7.82 -2.39 -0.02 0.90 16 Total: -1.00 -72.17 410.91 -0.94 -73.11 By element: Atomic # 1 Polarization: 41.33 SS G_CDS: -1.28 Total: 40.05 kcal Atomic # 6 Polarization: 5.83 SS G_CDS: 5.39 Total: 11.22 kcal Atomic # 7 Polarization: -110.91 SS G_CDS: -6.97 Total: -117.88 kcal Atomic # 8 Polarization: -51.25 SS G_CDS: -0.10 Total: -51.35 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Total: -72.17 -0.94 -73.11 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162256788.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.089 kcal (2) G-P(sol) polarization free energy of solvation -72.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds