Wall clock time and date at job start Sat Apr 11 2020 05:47:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86799 * 120.00396 * 2 1 4 4 H 1.48495 * 109.47323 * 269.99801 * 3 2 1 5 5 H 1.48498 * 109.47173 * 30.00523 * 3 2 1 6 6 H 1.48505 * 109.47106 * 149.99884 * 3 2 1 7 7 C 1.38956 * 119.99806 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99600 * 359.97438 * 7 2 1 9 9 N 1.37089 * 120.00171 * 180.02562 * 7 2 1 10 10 C 1.34782 * 120.00031 * 179.97438 * 9 7 2 11 11 O 1.21289 * 119.99868 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00148 * 179.97438 * 10 9 7 13 13 N 1.46890 * 109.47411 * 179.97438 * 12 10 9 14 14 C 1.46898 * 111.00202 * 180.02562 * 13 12 10 15 15 C 1.53005 * 109.47342 * 180.02562 * 14 13 12 16 16 C 1.52997 * 109.47452 * 179.97438 * 15 14 13 17 17 N 1.46497 * 109.46983 * 179.97438 * 16 15 14 18 18 C 1.34780 * 119.99566 * 180.02562 * 17 16 15 19 19 O 1.21280 * 120.00423 * 359.97438 * 18 17 16 20 20 C 1.50701 * 119.99795 * 180.02562 * 18 17 16 21 21 C 1.52997 * 109.47212 * 179.97438 * 20 18 17 22 22 C 1.54246 * 108.89840 * 296.39500 * 21 20 18 23 23 C 1.50551 * 108.48820 * 159.17552 * 22 21 20 24 24 C 1.54059 * 112.41467 * 94.26568 * 23 22 21 25 25 C 1.54072 * 112.81751 * 318.28434 * 24 23 22 26 26 C 1.50475 * 112.49368 * 318.27849 * 25 24 23 27 27 C 1.45539 * 108.90122 * 173.60298 * 21 20 18 28 28 H 0.97003 * 119.99410 * 359.97438 * 1 2 3 29 29 H 0.97005 * 120.00174 * 359.97438 * 9 7 2 30 30 H 1.09002 * 109.47045 * 59.99319 * 12 10 9 31 31 H 1.09005 * 109.47066 * 299.99868 * 12 10 9 32 32 H 1.00899 * 110.99784 * 303.95333 * 13 12 10 33 33 H 1.08998 * 109.47764 * 59.99655 * 14 13 12 34 34 H 1.09002 * 109.46774 * 299.99473 * 14 13 12 35 35 H 1.09001 * 109.46812 * 59.99568 * 15 14 13 36 36 H 1.09002 * 109.46935 * 299.99910 * 15 14 13 37 37 H 1.09001 * 109.46832 * 59.99801 * 16 15 14 38 38 H 1.09002 * 109.47153 * 299.99992 * 16 15 14 39 39 H 0.96995 * 120.00423 * 359.97438 * 17 16 15 40 40 H 1.09002 * 109.47060 * 299.99722 * 20 18 17 41 41 H 1.09001 * 109.47380 * 59.99809 * 20 18 17 42 42 H 1.09000 * 108.87638 * 54.99550 * 21 20 18 43 43 H 1.09001 * 109.62686 * 278.97938 * 22 21 20 44 44 H 1.09003 * 109.62383 * 39.54791 * 22 21 20 45 45 H 1.08998 * 108.91961 * 333.51164 * 23 22 21 46 46 H 1.08999 * 108.91653 * 215.01919 * 23 22 21 47 47 H 1.09000 * 108.81846 * 197.42154 * 24 23 22 48 48 H 1.09004 * 108.72528 * 79.08259 * 24 23 22 49 49 H 1.09003 * 108.87842 * 197.50758 * 25 24 23 50 50 H 1.08992 * 108.87850 * 79.05827 * 25 24 23 51 51 H 1.09002 * 109.62942 * 334.45043 * 26 25 24 52 52 H 1.09002 * 109.63043 * 213.86433 * 26 25 24 53 53 H 1.09005 * 108.89099 * 303.44891 * 27 21 20 54 54 H 1.09004 * 108.89303 * 62.02755 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4958 2.0463 -1.4000 5 1 1.4458 2.6526 0.7001 6 1 3.5458 1.4400 0.7001 7 6 2.0088 -1.2034 -0.0005 8 1 1.4687 -2.1387 -0.0005 9 7 3.3797 -1.2035 0.0000 10 6 4.0536 -2.3708 0.0000 11 8 3.4470 -3.4211 0.0000 12 6 5.5606 -2.3709 0.0000 13 7 6.0501 -3.7558 0.0006 14 6 7.5186 -3.7951 0.0012 15 6 7.9899 -5.2508 0.0012 16 6 9.5193 -5.2917 0.0012 17 7 9.9705 -6.6855 0.0018 18 6 11.2885 -6.9671 0.0025 19 8 12.1011 -6.0667 0.0021 20 6 11.7527 -8.4008 0.0025 21 6 13.2821 -8.4418 0.0027 22 6 13.7990 -7.8067 -1.3045 23 6 15.2281 -7.3814 -1.0961 24 6 16.2333 -8.4536 -1.5580 25 6 15.8080 -9.8809 -1.1631 26 6 15.2519 -9.9504 0.2333 27 6 13.7167 -9.8223 0.1561 28 1 -0.4849 0.8401 0.0004 29 1 3.8648 -0.3635 0.0004 30 1 5.9239 -1.8570 0.8899 31 1 5.9239 -1.8571 -0.8900 32 1 5.6746 -4.2717 0.7822 33 1 7.8953 -3.2909 0.8911 34 1 7.8959 -3.2915 -0.8888 35 1 7.6133 -5.7546 -0.8890 36 1 7.6126 -5.7548 0.8910 37 1 9.8962 -4.7878 0.8912 38 1 9.8963 -4.7878 -0.8887 39 1 9.3207 -7.4056 0.0025 40 1 11.3753 -8.9049 0.8923 41 1 11.3762 -8.9047 -0.8877 42 1 13.6504 -7.8598 0.8475 43 1 13.7465 -8.5368 -2.1121 44 1 13.1916 -6.9365 -1.5538 45 1 15.3867 -7.1826 -0.0362 46 1 15.4090 -6.4639 -1.6560 47 1 17.2047 -8.2403 -1.1119 48 1 16.3263 -8.4020 -2.6428 49 1 16.6747 -10.5385 -1.2306 50 1 15.0484 -10.2289 -1.8630 51 1 15.6578 -9.1336 0.8302 52 1 15.5173 -10.9057 0.6861 53 1 13.2821 -10.2297 1.0690 54 1 13.3579 -10.4019 -0.6944 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167357104.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:44 Heat of formation + Delta-G solvation = -128.362431 kcal Electronic energy + Delta-G solvation = -28320.514939 eV Core-core repulsion = 24289.705129 eV Total energy + Delta-G solvation = -4030.809809 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.18129 -40.31133 -39.46287 -37.63314 -36.12945 -35.63623 -34.57890 -33.75917 -32.91026 -32.46770 -29.55878 -28.36660 -26.33965 -25.64527 -24.78650 -23.84193 -22.56368 -21.46130 -21.27651 -20.91394 -20.24853 -20.12170 -17.92914 -17.77096 -17.30576 -17.00505 -16.83805 -16.60295 -16.50548 -15.91974 -15.73642 -15.43819 -15.28149 -15.24318 -14.89924 -14.70243 -14.43999 -14.17839 -14.01235 -13.77763 -13.64394 -13.53227 -13.29671 -13.12127 -12.97618 -12.88825 -12.65289 -12.47378 -12.42292 -12.40088 -11.97897 -11.84816 -11.64614 -11.51772 -11.44811 -11.39766 -11.23726 -11.17612 -10.95857 -10.65472 -10.44522 -10.25266 -10.01664 -9.34136 -8.41742 -6.02711 1.30396 1.35801 1.44531 1.72700 1.94853 2.22667 2.23976 2.76201 3.14720 3.41845 3.67667 3.75898 3.82388 4.00483 4.02318 4.13072 4.17898 4.20524 4.24452 4.26632 4.38473 4.43595 4.46391 4.53782 4.56421 4.57880 4.58672 4.71069 4.72468 4.79381 4.81342 4.88017 4.97536 5.09845 5.16860 5.19508 5.21247 5.25919 5.34947 5.36855 5.39690 5.41141 5.48983 5.52295 5.56863 5.64522 5.66211 5.89961 6.03870 6.38730 6.59303 6.62531 6.87491 7.33981 7.39243 7.95543 8.75893 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.038755 B = 0.001254 C = 0.001227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.313121 B =22330.651995 C =22822.296311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.013 4.013 3 Si 0.964 3.036 4 H -0.257 1.257 5 H -0.275 1.275 6 H -0.231 1.231 7 C -0.331 4.331 8 H 0.056 0.944 9 N -0.591 5.591 10 C 0.447 3.553 11 O -0.614 6.614 12 C 0.061 3.939 13 N -0.687 5.687 14 C 0.063 3.937 15 C -0.116 4.116 16 C 0.128 3.872 17 N -0.724 5.724 18 C 0.505 3.495 19 O -0.578 6.578 20 C -0.136 4.136 21 C -0.065 4.065 22 C -0.109 4.109 23 C -0.112 4.112 24 C -0.116 4.116 25 C -0.117 4.117 26 C -0.117 4.117 27 C -0.112 4.112 28 H 0.279 0.721 29 H 0.390 0.610 30 H 0.077 0.923 31 H 0.114 0.886 32 H 0.345 0.655 33 H 0.043 0.957 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.415 0.585 40 H 0.115 0.885 41 H 0.113 0.887 42 H 0.054 0.946 43 H 0.066 0.934 44 H 0.052 0.948 45 H 0.049 0.951 46 H 0.044 0.956 47 H 0.056 0.944 48 H 0.058 0.942 49 H 0.062 0.938 50 H 0.063 0.937 51 H 0.055 0.945 52 H 0.071 0.929 53 H 0.070 0.930 54 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.927 -17.596 0.076 39.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.212 4.212 3 Si 0.784 3.216 4 H -0.182 1.182 5 H -0.200 1.200 6 H -0.155 1.155 7 C -0.460 4.460 8 H 0.074 0.926 9 N -0.232 5.232 10 C 0.235 3.765 11 O -0.499 6.499 12 C -0.071 4.071 13 N -0.320 5.320 14 C -0.066 4.066 15 C -0.155 4.155 16 C 0.003 3.997 17 N -0.377 5.377 18 C 0.293 3.707 19 O -0.458 6.458 20 C -0.175 4.175 21 C -0.084 4.084 22 C -0.146 4.146 23 C -0.150 4.150 24 C -0.154 4.154 25 C -0.155 4.155 26 C -0.155 4.155 27 C -0.149 4.149 28 H 0.089 0.911 29 H 0.226 0.774 30 H 0.094 0.906 31 H 0.132 0.868 32 H 0.164 0.836 33 H 0.061 0.939 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.251 0.749 40 H 0.133 0.867 41 H 0.131 0.869 42 H 0.072 0.928 43 H 0.085 0.915 44 H 0.071 0.929 45 H 0.068 0.932 46 H 0.063 0.937 47 H 0.075 0.925 48 H 0.077 0.923 49 H 0.081 0.919 50 H 0.082 0.918 51 H 0.074 0.926 52 H 0.090 0.910 53 H 0.088 0.912 54 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 34.845 -17.616 -0.607 39.049 hybrid contribution -0.531 1.234 0.873 1.602 sum 34.313 -16.382 0.266 38.024 Atomic orbital electron populations 1.69804 1.08152 1.29260 1.50229 1.26101 0.96441 1.02662 0.95982 0.85371 0.79493 0.76755 0.79943 1.18190 1.20005 1.15457 1.19027 0.81545 0.94978 1.50476 0.92621 1.42038 1.05821 1.07644 1.67739 1.21005 0.91036 0.83301 0.81117 1.90537 1.71414 1.32787 1.55163 1.21632 0.89464 0.92006 1.04012 1.60050 1.08344 1.12012 1.51584 1.21908 0.85974 0.96985 1.01704 1.21595 0.93167 0.96836 1.03856 1.21133 0.93973 0.82964 1.01642 1.46033 1.07486 1.09069 1.75129 1.21310 0.81921 0.92741 0.74703 1.90686 1.54188 1.49992 1.50920 1.21916 0.97464 0.91793 1.06359 1.19813 0.93054 0.97370 0.98126 1.21402 0.95895 1.00139 0.97168 1.21229 0.95180 0.97866 1.00693 1.21925 0.98192 0.94605 1.00661 1.21338 1.01026 0.95973 0.97128 1.21312 0.95303 1.01809 0.97029 1.20529 0.96018 0.95517 1.02878 0.91126 0.77445 0.90554 0.86839 0.83599 0.93885 0.90148 0.90437 0.90573 0.92282 0.92271 0.74879 0.86724 0.86862 0.92784 0.91532 0.92913 0.93205 0.93743 0.92470 0.92345 0.91905 0.91810 0.92621 0.91007 0.91172 0.91045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.24 13.96 21.66 0.30 -55.94 16 2 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 3 Si 0.96 38.62 27.74 68.60 1.90 40.52 16 4 H -0.26 -9.81 7.11 99.48 0.71 -9.10 16 5 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 6 H -0.23 -7.76 6.52 99.48 0.65 -7.12 16 7 C -0.33 -19.41 10.16 84.04 0.85 -18.55 16 8 H 0.06 3.89 7.39 -2.91 -0.02 3.86 16 9 N -0.59 -27.76 5.09 -306.98 -1.56 -29.32 16 10 C 0.45 20.05 7.82 87.66 0.69 20.74 16 11 O -0.61 -33.88 15.78 -3.06 -0.05 -33.93 16 12 C 0.06 1.82 6.17 85.56 0.53 2.35 16 13 N -0.69 -19.11 6.13 -517.94 -3.17 -22.28 16 14 C 0.06 1.20 5.68 86.31 0.49 1.69 16 15 C -0.12 -1.79 5.59 30.60 0.17 -1.62 16 16 C 0.13 2.00 5.67 86.38 0.49 2.49 16 17 N -0.72 -9.58 5.56 -463.06 -2.57 -12.15 16 18 C 0.50 8.36 7.32 87.66 0.64 9.01 16 19 O -0.58 -14.55 14.05 -3.03 -0.04 -14.59 16 20 C -0.14 -1.27 5.10 29.85 0.15 -1.12 16 21 C -0.06 -0.78 1.39 -12.65 -0.02 -0.80 16 22 C -0.11 -1.62 4.62 30.22 0.14 -1.48 16 23 C -0.11 -1.71 5.32 30.16 0.16 -1.55 16 24 C -0.12 -1.35 5.85 31.32 0.18 -1.16 16 25 C -0.12 -1.08 5.31 30.14 0.16 -0.92 16 26 C -0.12 -1.05 5.61 30.20 0.17 -0.88 16 27 C -0.11 -0.92 4.44 28.74 0.13 -0.79 16 28 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 29 H 0.39 15.10 5.76 -92.70 -0.53 14.57 16 30 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.11 2.87 8.14 -2.38 -0.02 2.85 16 32 H 0.35 10.15 8.43 -89.69 -0.76 9.39 16 33 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.41 3.22 8.47 -92.71 -0.79 2.43 16 40 H 0.11 0.60 8.05 -2.39 -0.02 0.58 16 41 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.05 0.90 7.26 -2.39 -0.02 0.88 16 43 H 0.07 0.84 6.97 -2.39 -0.02 0.83 16 44 H 0.05 1.06 5.76 -2.39 -0.01 1.05 16 45 H 0.05 0.85 6.63 -2.39 -0.02 0.83 16 46 H 0.04 0.75 8.14 -2.39 -0.02 0.74 16 47 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 49 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 50 H 0.06 0.56 6.62 -2.39 -0.02 0.54 16 51 H 0.06 0.63 6.98 -2.39 -0.02 0.61 16 52 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 53 H 0.07 0.45 8.04 -2.38 -0.02 0.43 16 54 H 0.07 0.47 7.46 -2.38 -0.02 0.46 16 Total: -1.00 -80.14 416.69 -1.02 -81.16 By element: Atomic # 1 Polarization: 40.61 SS G_CDS: -1.23 Total: 39.38 kcal Atomic # 6 Polarization: 1.73 SS G_CDS: 5.40 Total: 7.14 kcal Atomic # 7 Polarization: -112.68 SS G_CDS: -7.01 Total: -119.69 kcal Atomic # 8 Polarization: -48.42 SS G_CDS: -0.09 Total: -48.52 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 1.90 Total: 40.52 kcal Total: -80.14 -1.02 -81.16 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167357104.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.200 kcal (2) G-P(sol) polarization free energy of solvation -80.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds