Wall clock time and date at job start Sat Apr 11 2020 05:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47198 * 2 1 4 4 C 1.53000 * 115.55869 * 39.77058 * 3 2 1 5 5 C 1.52999 * 109.47249 * 80.09016 * 4 3 2 6 6 C 1.53002 * 109.47025 * 200.08707 * 4 3 2 7 7 C 1.52997 * 117.50279 * 254.07732 * 3 2 1 8 8 C 1.52998 * 60.00203 * 252.51344 * 7 3 2 9 9 H 1.09002 * 117.49848 * 252.50845 * 8 7 3 10 10 C 1.50702 * 117.51981 * 107.48127 * 8 7 3 11 11 O 1.21282 * 120.00011 * 291.28704 * 10 8 7 12 12 N 1.34780 * 119.99896 * 111.28115 * 10 8 7 13 13 C 1.46500 * 119.99808 * 180.02562 * 12 10 8 14 14 C 1.52996 * 109.47005 * 180.02562 * 13 12 10 15 15 C 1.52994 * 109.47041 * 179.97438 * 14 13 12 16 16 N 1.46902 * 109.47121 * 179.97438 * 15 14 13 17 17 C 1.46903 * 111.00148 * 179.97438 * 16 15 14 18 18 C 1.50700 * 109.47372 * 179.97438 * 17 16 15 19 19 O 1.21293 * 119.99697 * 0.02562 * 18 17 16 20 20 N 1.34770 * 120.00103 * 179.97438 * 18 17 16 21 21 C 1.37102 * 119.99976 * 180.02562 * 20 18 17 22 22 H 1.07997 * 119.99814 * 0.02562 * 21 20 18 23 23 C 1.38951 * 120.00104 * 180.02562 * 21 20 18 24 24 N 1.31419 * 119.99791 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00336 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46835 * 359.97438 * 25 23 21 27 27 H 1.48501 * 109.47407 * 119.99308 * 25 23 21 28 28 H 1.48501 * 109.47571 * 240.00089 * 25 23 21 29 29 H 1.09000 * 109.47323 * 174.21081 * 1 2 3 30 30 H 1.09002 * 109.46802 * 294.20561 * 1 2 3 31 31 H 1.09000 * 109.47620 * 54.20452 * 1 2 3 32 32 H 1.09004 * 109.46934 * 240.00505 * 2 1 3 33 33 H 1.08997 * 109.47693 * 120.00724 * 2 1 3 34 34 H 1.08995 * 109.47290 * 320.08719 * 4 3 2 35 35 H 1.08996 * 109.47209 * 184.98413 * 5 4 3 36 36 H 1.09002 * 109.46960 * 304.98863 * 5 4 3 37 37 H 1.08999 * 109.47248 * 64.98823 * 5 4 3 38 38 H 1.09001 * 109.46804 * 59.99895 * 6 4 3 39 39 H 1.08996 * 109.47236 * 180.02562 * 6 4 3 40 40 H 1.09002 * 109.46981 * 300.00466 * 6 4 3 41 41 H 1.09007 * 117.49968 * 145.01853 * 7 3 2 42 42 H 1.09004 * 117.49628 * 0.02562 * 7 3 2 43 43 H 0.96993 * 119.99883 * 0.02562 * 12 10 8 44 44 H 1.09005 * 109.47046 * 299.99789 * 13 12 10 45 45 H 1.08994 * 109.47194 * 59.99730 * 13 12 10 46 46 H 1.08996 * 109.47355 * 300.00034 * 14 13 12 47 47 H 1.09009 * 109.47105 * 59.99977 * 14 13 12 48 48 H 1.09005 * 109.47148 * 299.99679 * 15 14 13 49 49 H 1.08997 * 109.47421 * 59.99973 * 15 14 13 50 50 H 1.00899 * 111.00478 * 303.95465 * 16 15 14 51 51 H 1.08996 * 109.47272 * 300.00123 * 17 16 15 52 52 H 1.09003 * 109.46784 * 59.99936 * 17 16 15 53 53 H 0.97003 * 120.00327 * 0.02562 * 20 18 17 54 54 H 0.97000 * 119.99621 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.2598 2.4185 0.8830 5 6 1.7045 2.2571 2.3380 6 6 1.5319 3.8520 0.4226 7 6 2.6265 1.9845 -1.3050 8 6 3.5492 1.6581 -0.1290 9 1 3.9864 2.4954 0.4151 10 6 4.4197 0.4335 -0.2459 11 8 3.9179 -0.6706 -0.2340 12 7 5.7558 0.5652 -0.3639 13 6 6.6020 -0.6253 -0.4781 14 6 8.0668 -0.2002 -0.5980 15 6 8.9505 -1.4435 -0.7166 16 7 10.3569 -1.0354 -0.8324 17 6 11.2370 -2.2059 -0.9479 18 6 12.6682 -1.7488 -1.0651 19 8 12.9294 -0.5644 -1.0531 20 7 13.6579 -2.6560 -1.1822 21 6 14.9600 -2.2401 -1.2882 22 1 15.1926 -1.1856 -1.2776 23 6 15.9804 -3.1755 -1.4095 24 7 15.6974 -4.4587 -1.4220 25 14 17.7544 -2.6089 -1.5548 26 1 17.8049 -1.1253 -1.5157 27 1 18.5447 -3.1614 -0.4254 28 1 18.3240 -3.0893 -2.8393 29 1 -0.3634 -1.0224 -0.1037 30 1 -0.3633 0.4214 0.9373 31 1 -0.3634 0.6011 -0.8335 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 0.1934 2.2076 0.8034 35 1 1.0880 2.8878 2.9784 36 1 1.5933 1.2152 2.6385 37 1 2.7491 2.5533 2.4337 38 1 1.2152 3.9669 -0.6140 39 1 0.9765 4.5473 1.0519 40 1 2.5984 4.0628 0.5021 41 1 2.4565 3.0364 -1.5346 42 1 2.6487 1.3135 -2.1638 43 1 6.1572 1.4482 -0.3731 44 1 6.4759 -1.2471 0.4083 45 1 6.3140 -1.1921 -1.3634 46 1 8.1933 0.4217 -1.4841 47 1 8.3544 0.3664 0.2877 48 1 8.8240 -2.0651 0.1698 49 1 8.6630 -2.0105 -1.6020 50 1 10.4880 -0.4060 -1.6100 51 1 11.1266 -2.8323 -0.0627 52 1 10.9651 -2.7788 -1.8345 53 1 13.4491 -3.6033 -1.1914 54 1 16.4097 -5.1116 -1.5070 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169729255.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:52 Heat of formation + Delta-G solvation = -94.309835 kcal Electronic energy + Delta-G solvation = -28500.558298 eV Core-core repulsion = 24471.225121 eV Total energy + Delta-G solvation = -4029.333178 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.52387 -40.17379 -39.28642 -37.58309 -36.10528 -35.62345 -33.86662 -33.31971 -33.17265 -32.24339 -28.75418 -28.05406 -26.78633 -25.46267 -24.73715 -23.76526 -23.15666 -22.58448 -21.27143 -21.01368 -19.91455 -19.18094 -18.08884 -17.80077 -17.26753 -16.83634 -16.61139 -16.52361 -16.21172 -15.95666 -15.76384 -15.38185 -15.11787 -15.04612 -14.93880 -14.70341 -14.42066 -14.29264 -13.71442 -13.58381 -13.40498 -13.22461 -13.20602 -12.94007 -12.89031 -12.81056 -12.69501 -12.61686 -12.44177 -12.40356 -12.29258 -12.11022 -12.01375 -11.85911 -11.69820 -11.51953 -11.44727 -10.90256 -10.70222 -10.43455 -10.35237 -10.06807 -10.02449 -9.35132 -8.47497 -5.96500 1.36619 1.42061 1.52487 1.56367 2.03892 2.12706 2.29605 2.82308 2.94098 3.19845 3.51311 3.61662 3.73174 3.84760 3.91422 3.98636 4.08662 4.14036 4.21858 4.31010 4.33255 4.39348 4.47326 4.53878 4.55288 4.57646 4.58341 4.68371 4.69594 4.75986 4.79423 4.81077 4.87787 5.01323 5.06423 5.12173 5.14988 5.15502 5.19908 5.25754 5.30506 5.35585 5.40586 5.44951 5.49239 5.53603 5.64459 5.87313 6.08592 6.39658 6.57714 6.58996 7.11666 7.28392 7.55091 8.10059 8.70118 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.034038 B = 0.001300 C = 0.001275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 822.417191 B =21535.430773 C =21954.464943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.071 4.071 3 C -0.083 4.083 4 C -0.060 4.060 5 C -0.145 4.145 6 C -0.152 4.152 7 C -0.140 4.140 8 C -0.189 4.189 9 H 0.142 0.858 10 C 0.534 3.466 11 O -0.574 6.574 12 N -0.718 5.718 13 C 0.129 3.871 14 C -0.114 4.114 15 C 0.063 3.937 16 N -0.683 5.683 17 C 0.064 3.936 18 C 0.437 3.563 19 O -0.623 6.623 20 N -0.573 5.573 21 C -0.335 4.335 22 H 0.079 0.921 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.994 3.006 26 H -0.273 1.273 27 H -0.271 1.271 28 H -0.270 1.270 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.046 0.954 34 H 0.087 0.913 35 H 0.064 0.936 36 H 0.043 0.957 37 H 0.052 0.948 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.132 0.868 42 H 0.086 0.914 43 H 0.414 0.586 44 H 0.059 0.941 45 H 0.060 0.940 46 H 0.077 0.923 47 H 0.078 0.922 48 H 0.078 0.922 49 H 0.041 0.959 50 H 0.346 0.654 51 H 0.103 0.897 52 H 0.067 0.933 53 H 0.396 0.604 54 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.268 12.767 2.496 34.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.109 4.109 3 C -0.083 4.083 4 C -0.079 4.079 5 C -0.202 4.202 6 C -0.209 4.209 7 C -0.177 4.177 8 C -0.210 4.210 9 H 0.159 0.841 10 C 0.322 3.678 11 O -0.454 6.454 12 N -0.370 5.370 13 C 0.004 3.996 14 C -0.153 4.153 15 C -0.066 4.066 16 N -0.316 5.316 17 C -0.068 4.068 18 C 0.224 3.776 19 O -0.510 6.510 20 N -0.210 5.210 21 C -0.465 4.465 22 H 0.097 0.903 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.818 3.182 26 H -0.197 1.197 27 H -0.196 1.196 28 H -0.196 1.196 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.105 0.895 35 H 0.083 0.917 36 H 0.062 0.938 37 H 0.071 0.929 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.150 0.850 42 H 0.104 0.896 43 H 0.250 0.750 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.096 0.904 47 H 0.097 0.903 48 H 0.096 0.904 49 H 0.059 0.941 50 H 0.164 0.836 51 H 0.121 0.879 52 H 0.085 0.915 53 H 0.230 0.770 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -32.212 12.640 3.177 34.748 hybrid contribution 1.246 -0.672 -0.918 1.688 sum -30.965 11.968 2.259 33.274 Atomic orbital electron populations 1.21848 0.95063 1.01492 1.02217 1.20942 0.95314 0.93166 1.01431 1.21658 0.91038 0.96604 0.99019 1.20728 0.99745 0.93747 0.93634 1.21795 1.01451 1.01280 0.95682 1.22012 1.02155 0.94916 1.01841 1.23365 0.99663 1.03708 0.90932 1.22367 0.92819 0.98298 1.07510 0.84071 1.20225 0.82542 0.90157 0.74887 1.90698 1.74119 1.29022 1.51563 1.45923 1.06222 1.10696 1.74164 1.21146 0.89223 0.87644 1.01551 1.21576 0.91768 0.98020 1.03886 1.21901 0.86102 0.97126 1.01485 1.60045 1.04893 1.15634 1.51008 1.21535 0.88949 0.93473 1.02869 1.20881 0.88282 0.86200 0.82195 1.90485 1.85023 1.18528 1.56939 1.41946 1.05829 1.08828 1.64431 1.19728 0.83279 0.94119 1.49344 0.90252 1.26054 1.04088 0.94850 0.96250 1.69684 1.35403 1.00957 1.50099 0.84854 0.76823 0.78246 0.78309 1.19725 1.19631 1.19569 0.93209 0.91861 0.92024 0.93029 0.93562 0.89473 0.91663 0.93804 0.92871 0.91496 0.91860 0.92236 0.85033 0.89570 0.74953 0.92228 0.92189 0.90444 0.90334 0.90397 0.94129 0.83579 0.87868 0.91546 0.76966 0.91290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 8.86 71.98 0.64 -1.32 16 2 C -0.07 -1.26 4.33 30.59 0.13 -1.13 16 3 C -0.08 -1.08 1.79 -52.18 -0.09 -1.17 16 4 C -0.06 -0.57 2.62 -10.79 -0.03 -0.60 16 5 C -0.14 -1.51 9.03 71.98 0.65 -0.86 16 6 C -0.15 -0.96 7.86 71.98 0.57 -0.39 16 7 C -0.14 -1.55 9.01 30.59 0.28 -1.27 16 8 C -0.19 -2.47 5.19 -11.54 -0.06 -2.53 16 9 H 0.14 1.26 7.14 -2.39 -0.02 1.24 16 10 C 0.53 10.35 7.59 87.66 0.67 11.01 16 11 O -0.57 -15.52 13.10 -3.04 -0.04 -15.56 16 12 N -0.72 -11.27 5.56 -463.06 -2.57 -13.85 16 13 C 0.13 2.28 5.67 86.38 0.49 2.77 16 14 C -0.11 -1.99 5.59 30.59 0.17 -1.82 16 15 C 0.06 1.37 5.69 86.30 0.49 1.87 16 16 N -0.68 -20.85 6.13 -517.93 -3.17 -24.02 16 17 C 0.06 2.19 6.17 85.56 0.53 2.71 16 18 C 0.44 20.85 7.82 87.66 0.69 21.53 16 19 O -0.62 -34.56 15.78 -3.07 -0.05 -34.61 16 20 N -0.57 -29.56 5.29 -306.99 -1.62 -31.19 16 21 C -0.34 -19.13 9.68 84.04 0.81 -18.32 16 22 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 23 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 24 N -0.92 -49.78 13.05 21.66 0.28 -49.50 16 25 Si 0.99 42.93 29.55 68.60 2.03 44.95 16 26 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 27 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 28 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.71 6.85 -2.39 -0.02 0.69 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.05 1.15 6.70 -2.38 -0.02 1.13 16 33 H 0.05 1.02 7.58 -2.39 -0.02 1.00 16 34 H 0.09 0.78 5.98 -2.39 -0.01 0.77 16 35 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.05 0.56 7.87 -2.39 -0.02 0.54 16 38 H 0.07 0.34 6.72 -2.39 -0.02 0.33 16 39 H 0.06 0.34 8.14 -2.39 -0.02 0.33 16 40 H 0.06 0.35 6.94 -2.39 -0.02 0.33 16 41 H 0.13 0.86 5.89 -2.38 -0.01 0.85 16 42 H 0.09 1.18 8.08 -2.39 -0.02 1.16 16 43 H 0.41 4.33 8.47 -92.71 -0.79 3.55 16 44 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 45 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 47 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 48 H 0.08 1.65 8.14 -2.38 -0.02 1.64 16 49 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.35 10.90 8.43 -89.69 -0.76 10.15 16 51 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 52 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 53 H 0.40 19.41 7.90 -92.71 -0.73 18.67 16 54 H 0.28 14.01 8.31 -92.71 -0.77 13.24 16 Total: -1.00 -71.77 428.04 -0.12 -71.89 By element: Atomic # 1 Polarization: 42.96 SS G_CDS: -1.36 Total: 41.59 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: 6.39 Total: 10.29 kcal Atomic # 7 Polarization: -111.47 SS G_CDS: -7.09 Total: -118.56 kcal Atomic # 8 Polarization: -50.08 SS G_CDS: -0.09 Total: -50.17 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.95 kcal Total: -71.77 -0.12 -71.89 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169729255.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.417 kcal (2) G-P(sol) polarization free energy of solvation -71.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds