Wall clock time and date at job start Sat Apr 11 2020 05:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53006 * 109.47235 * 2 1 4 4 C 1.53000 * 115.55832 * 39.11271 * 3 2 1 5 5 C 1.52996 * 109.47498 * 94.26920 * 4 3 2 6 6 C 1.53003 * 109.46825 * 214.27074 * 4 3 2 7 7 C 1.53069 * 117.49514 * 253.39824 * 3 2 1 8 8 C 1.52995 * 59.98579 * 252.51188 * 7 3 2 9 9 H 1.09005 * 117.49990 * 107.49660 * 8 7 3 10 10 C 1.50703 * 117.50243 * 252.49982 * 8 7 3 11 11 O 1.21274 * 120.00015 * 51.19604 * 10 8 7 12 12 N 1.34779 * 119.99904 * 231.19307 * 10 8 7 13 13 C 1.46495 * 119.99896 * 179.97438 * 12 10 8 14 14 C 1.52997 * 109.46990 * 180.02562 * 13 12 10 15 15 C 1.53005 * 109.47207 * 180.02562 * 14 13 12 16 16 N 1.46902 * 109.47390 * 179.97438 * 15 14 13 17 17 C 1.46900 * 110.99847 * 179.97438 * 16 15 14 18 18 C 1.50697 * 109.46581 * 180.02562 * 17 16 15 19 19 O 1.21290 * 120.00937 * 0.02562 * 18 17 16 20 20 N 1.34783 * 119.99597 * 180.02562 * 18 17 16 21 21 C 1.37102 * 119.99645 * 180.02562 * 20 18 17 22 22 H 1.07995 * 120.00169 * 359.97438 * 21 20 18 23 23 C 1.38954 * 119.99412 * 179.97438 * 21 20 18 24 24 N 1.31411 * 119.99238 * 179.97438 * 23 21 20 25 25 Si 1.86796 * 120.00253 * 359.97438 * 23 21 20 26 26 H 1.48498 * 109.46838 * 90.00139 * 25 23 21 27 27 H 1.48499 * 109.47027 * 209.99729 * 25 23 21 28 28 H 1.48500 * 109.47030 * 330.00080 * 25 23 21 29 29 H 1.09006 * 109.47088 * 293.05551 * 1 2 3 30 30 H 1.08996 * 109.47006 * 53.05019 * 1 2 3 31 31 H 1.08994 * 109.47204 * 173.05323 * 1 2 3 32 32 H 1.08997 * 109.47230 * 240.00345 * 2 1 3 33 33 H 1.08999 * 109.47515 * 120.00176 * 2 1 3 34 34 H 1.09000 * 109.47470 * 334.26397 * 4 3 2 35 35 H 1.09000 * 109.47147 * 29.00644 * 5 4 3 36 36 H 1.09005 * 109.47466 * 149.00065 * 5 4 3 37 37 H 1.08994 * 109.47456 * 269.00405 * 5 4 3 38 38 H 1.09003 * 109.46929 * 325.86387 * 6 4 3 39 39 H 1.08997 * 109.47307 * 85.86712 * 6 4 3 40 40 H 1.09005 * 109.47255 * 205.86947 * 6 4 3 41 41 H 1.09003 * 117.50901 * 145.03631 * 7 3 2 42 42 H 1.08997 * 117.51638 * 359.97438 * 7 3 2 43 43 H 0.97004 * 120.00026 * 0.02562 * 12 10 8 44 44 H 1.09000 * 109.47468 * 60.00237 * 13 12 10 45 45 H 1.09003 * 109.47385 * 299.99833 * 13 12 10 46 46 H 1.08997 * 109.47415 * 300.00044 * 14 13 12 47 47 H 1.09000 * 109.47632 * 60.00424 * 14 13 12 48 48 H 1.09006 * 109.47026 * 300.00134 * 15 14 13 49 49 H 1.09000 * 109.47441 * 59.99908 * 15 14 13 50 50 H 1.00906 * 110.99478 * 56.04820 * 16 15 14 51 51 H 1.08992 * 109.47110 * 299.99941 * 17 16 15 52 52 H 1.09000 * 109.46700 * 60.00616 * 17 16 15 53 53 H 0.96993 * 120.00348 * 359.97438 * 20 18 17 54 54 H 0.97005 * 119.99616 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.2503 2.4219 0.8707 5 6 1.9088 2.5252 2.2479 6 6 1.2387 3.8000 0.2062 7 6 2.6413 1.9795 -1.3012 8 6 3.5505 1.6578 -0.1135 9 1 4.1810 0.7717 -0.1877 10 6 4.1466 2.8183 0.6409 11 8 3.4324 3.7139 1.0390 12 7 5.4736 2.8607 0.8733 13 6 6.0531 3.9890 1.6062 14 6 7.5653 3.7931 1.7313 15 6 8.1706 4.9713 2.4973 16 7 9.6225 4.7829 2.6180 17 6 10.2390 5.8980 3.3491 18 6 11.7251 5.6704 3.4521 19 8 12.2220 4.6774 2.9642 20 7 12.5022 6.5705 4.0866 21 6 13.8543 6.3637 4.1799 22 1 14.2966 5.4794 3.7454 23 6 14.6556 7.2919 4.8336 24 7 15.9515 7.0934 4.9234 25 14 13.8906 8.8216 5.5845 26 1 13.4993 8.5408 6.9892 27 1 14.8763 9.9320 5.5579 28 1 12.6882 9.2082 4.8035 29 1 -0.3633 0.4025 0.9456 30 1 -0.3633 0.6177 -0.8212 31 1 -0.3633 -1.0201 -0.1243 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 0.2268 2.0643 0.9833 35 1 2.9782 2.3361 2.1545 36 1 1.7507 3.5251 2.6522 37 1 1.4667 1.7883 2.9183 38 1 2.1830 3.9604 -0.3142 39 1 0.4168 3.8522 -0.5078 40 1 1.1083 4.5693 0.9674 41 1 2.4743 3.0305 -1.5369 42 1 2.6739 1.3050 -2.1568 43 1 6.0449 2.1445 0.5547 44 1 5.6098 4.0427 2.6005 45 1 5.8504 4.9148 1.0676 46 1 7.7685 2.8674 2.2697 47 1 8.0084 3.7399 0.7369 48 1 7.9674 5.8973 1.9593 49 1 7.7276 5.0242 3.4918 50 1 10.0485 4.6662 1.7108 51 1 10.0506 6.8300 2.8164 52 1 9.8100 5.9579 4.3494 53 1 12.1051 7.3648 4.4766 54 1 16.5109 7.7415 5.3794 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169729256.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:55 Heat of formation + Delta-G solvation = -51.806373 kcal Electronic energy + Delta-G solvation = -29022.222756 eV Core-core repulsion = 24994.732667 eV Total energy + Delta-G solvation = -4027.490089 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.01825 -40.31547 -38.96753 -37.51392 -36.12426 -35.67420 -33.93986 -33.74632 -33.00394 -32.25021 -28.88347 -28.20962 -26.71572 -25.39718 -24.67040 -23.59219 -23.25364 -22.53873 -21.31330 -21.07124 -20.24491 -18.95064 -18.42182 -17.82934 -17.29692 -16.93407 -16.79178 -16.55510 -16.25381 -15.85945 -15.74281 -15.64149 -15.24769 -14.93375 -14.75466 -14.60064 -14.49569 -14.21867 -14.15084 -13.60044 -13.36923 -13.30942 -13.13622 -13.05899 -12.89854 -12.78409 -12.59611 -12.47185 -12.41603 -12.36013 -11.98022 -11.96628 -11.81530 -11.73599 -11.51964 -11.49750 -11.37144 -10.89105 -10.61748 -10.45995 -10.25464 -10.20480 -9.84673 -9.34293 -8.41885 -6.02939 1.30255 1.35703 1.44486 1.53527 1.94623 2.18854 2.22816 2.75324 2.91404 3.14493 3.41382 3.64761 3.72747 3.89578 3.92213 4.00706 4.09798 4.13642 4.18419 4.27332 4.37362 4.43455 4.43728 4.54759 4.56893 4.58713 4.61437 4.67449 4.71551 4.79103 4.83107 4.89662 4.94848 5.02297 5.10003 5.13631 5.18801 5.19546 5.23004 5.28393 5.33890 5.39799 5.50965 5.52086 5.56034 5.57683 5.77168 5.89792 6.03799 6.38318 6.59100 6.64049 6.87238 7.36492 7.38998 7.95321 8.75729 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.033083 B = 0.001410 C = 0.001380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.165458 B =19850.870768 C =20278.852763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.085 4.085 3 C -0.083 4.083 4 C -0.054 4.054 5 C -0.127 4.127 6 C -0.132 4.132 7 C -0.144 4.144 8 C -0.192 4.192 9 H 0.138 0.862 10 C 0.526 3.474 11 O -0.544 6.544 12 N -0.722 5.722 13 C 0.132 3.868 14 C -0.117 4.117 15 C 0.064 3.936 16 N -0.688 5.688 17 C 0.061 3.939 18 C 0.447 3.553 19 O -0.615 6.615 20 N -0.591 5.591 21 C -0.331 4.331 22 H 0.055 0.945 23 C -0.014 4.014 24 N -0.934 5.934 25 Si 0.965 3.035 26 H -0.257 1.257 27 H -0.275 1.275 28 H -0.231 1.231 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.078 0.922 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.057 0.943 36 H 0.037 0.963 37 H 0.031 0.969 38 H 0.073 0.927 39 H 0.038 0.962 40 H 0.032 0.968 41 H 0.100 0.900 42 H 0.121 0.879 43 H 0.411 0.589 44 H 0.060 0.940 45 H 0.061 0.939 46 H 0.075 0.925 47 H 0.074 0.926 48 H 0.043 0.957 49 H 0.080 0.920 50 H 0.345 0.655 51 H 0.077 0.923 52 H 0.114 0.886 53 H 0.390 0.610 54 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.283 -8.791 -11.102 38.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.122 4.122 3 C -0.084 4.084 4 C -0.072 4.072 5 C -0.184 4.184 6 C -0.188 4.188 7 C -0.181 4.181 8 C -0.213 4.213 9 H 0.156 0.844 10 C 0.315 3.685 11 O -0.423 6.423 12 N -0.374 5.374 13 C 0.007 3.993 14 C -0.155 4.155 15 C -0.065 4.065 16 N -0.320 5.320 17 C -0.071 4.071 18 C 0.235 3.765 19 O -0.499 6.499 20 N -0.232 5.232 21 C -0.460 4.460 22 H 0.074 0.926 23 C -0.212 4.212 24 N -0.574 5.574 25 Si 0.785 3.215 26 H -0.182 1.182 27 H -0.200 1.200 28 H -0.155 1.155 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.076 0.924 36 H 0.056 0.944 37 H 0.050 0.950 38 H 0.091 0.909 39 H 0.057 0.943 40 H 0.051 0.949 41 H 0.119 0.881 42 H 0.139 0.861 43 H 0.247 0.753 44 H 0.078 0.922 45 H 0.079 0.921 46 H 0.094 0.906 47 H 0.093 0.907 48 H 0.062 0.938 49 H 0.099 0.901 50 H 0.164 0.836 51 H 0.095 0.905 52 H 0.132 0.868 53 H 0.226 0.774 54 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -35.289 -9.143 -10.508 37.938 hybrid contribution 0.948 1.261 -0.078 1.580 sum -34.341 -7.882 -10.586 36.790 Atomic orbital electron populations 1.21783 0.95017 1.02053 1.01848 1.21107 0.96443 0.91935 1.02707 1.21729 0.90594 0.97106 0.98961 1.20584 0.98422 0.94132 0.94046 1.22132 1.01103 0.99441 0.95729 1.22161 1.01111 0.95815 0.99757 1.23471 0.99767 1.03345 0.91534 1.22398 0.95079 0.99379 1.04423 0.84400 1.19910 0.81805 0.87306 0.79511 1.90842 1.59295 1.40640 1.51515 1.45960 1.07915 1.25677 1.57851 1.21111 0.92547 0.89218 0.96389 1.21594 0.93092 0.99451 1.01378 1.21903 0.86330 0.97163 1.01086 1.60061 1.04026 1.43053 1.24903 1.21631 0.89257 0.94130 1.02080 1.21009 0.90064 0.83763 0.81628 1.90538 1.76482 1.31084 1.51812 1.42039 1.06696 1.22331 1.52180 1.19027 0.82659 1.08358 1.35982 0.92643 1.26109 0.95531 1.02272 0.97315 1.69806 1.05818 1.38330 1.43478 0.85363 0.79511 0.76956 0.79683 1.18196 1.20001 1.15452 0.92829 0.92473 0.91776 0.90313 0.91546 0.90210 0.92447 0.94432 0.94993 0.90909 0.94340 0.94861 0.88144 0.86068 0.75297 0.92152 0.92074 0.90620 0.90713 0.93838 0.90140 0.83625 0.90536 0.86836 0.77444 0.91128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 8.92 71.98 0.64 -0.57 16 2 C -0.08 -0.72 6.08 30.59 0.19 -0.54 16 3 C -0.08 -0.98 1.94 -52.16 -0.10 -1.08 16 4 C -0.05 -0.84 2.74 -10.79 -0.03 -0.87 16 5 C -0.13 -2.42 7.98 71.98 0.57 -1.84 16 6 C -0.13 -2.36 7.24 71.98 0.52 -1.84 16 7 C -0.14 -1.50 8.99 30.62 0.28 -1.22 16 8 C -0.19 -2.21 5.65 -11.54 -0.07 -2.28 16 9 H 0.14 1.01 8.14 -2.38 -0.02 0.99 16 10 C 0.53 8.62 5.67 87.66 0.50 9.11 16 11 O -0.54 -11.86 8.84 -3.01 -0.03 -11.88 16 12 N -0.72 -9.78 5.56 -463.07 -2.57 -12.36 16 13 C 0.13 2.01 5.67 86.38 0.49 2.50 16 14 C -0.12 -1.82 5.59 30.59 0.17 -1.65 16 15 C 0.06 1.22 5.69 86.30 0.49 1.71 16 16 N -0.69 -19.21 6.13 -517.92 -3.17 -22.39 16 17 C 0.06 1.83 6.17 85.56 0.53 2.36 16 18 C 0.45 20.09 7.82 87.66 0.69 20.78 16 19 O -0.61 -33.98 15.78 -3.06 -0.05 -34.03 16 20 N -0.59 -27.80 5.09 -306.98 -1.56 -29.37 16 21 C -0.33 -19.43 10.16 84.04 0.85 -18.58 16 22 H 0.06 3.88 7.39 -2.91 -0.02 3.85 16 23 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 24 N -0.93 -56.28 13.96 21.66 0.30 -55.98 16 25 Si 0.96 38.66 27.74 68.60 1.90 40.56 16 26 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 27 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 28 H -0.23 -7.76 6.52 99.48 0.65 -7.11 16 29 H 0.05 0.50 6.64 -2.38 -0.02 0.48 16 30 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.08 0.47 7.94 -2.39 -0.02 0.45 16 33 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.08 1.13 5.51 -2.39 -0.01 1.12 16 35 H 0.06 1.17 4.22 -2.39 -0.01 1.16 16 36 H 0.04 0.83 7.19 -2.38 -0.02 0.81 16 37 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.07 1.42 3.41 -2.39 -0.01 1.41 16 39 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.03 0.70 7.43 -2.38 -0.02 0.68 16 41 H 0.10 1.30 5.55 -2.39 -0.01 1.29 16 42 H 0.12 0.77 8.08 -2.39 -0.02 0.75 16 43 H 0.41 3.76 8.47 -92.71 -0.79 2.98 16 44 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 47 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 48 H 0.04 0.73 8.14 -2.38 -0.02 0.71 16 49 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 50 H 0.35 10.21 8.43 -89.69 -0.76 9.46 16 51 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 52 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 53 H 0.39 15.12 5.76 -92.71 -0.53 14.59 16 54 H 0.28 15.36 8.31 -92.70 -0.77 14.59 16 Total: -1.00 -77.65 413.94 -0.20 -77.85 By element: Atomic # 1 Polarization: 43.10 SS G_CDS: -1.21 Total: 41.89 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: 6.19 Total: 5.70 kcal Atomic # 7 Polarization: -113.09 SS G_CDS: -7.01 Total: -120.09 kcal Atomic # 8 Polarization: -45.83 SS G_CDS: -0.07 Total: -45.91 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 1.90 Total: 40.56 kcal Total: -77.65 -0.20 -77.85 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169729256.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.045 kcal (2) G-P(sol) polarization free energy of solvation -77.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds