Wall clock time and date at job start Sat Apr 11 2020 05:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 109.47321 * 2 1 4 4 C 1.53008 * 109.47014 * 240.00452 * 2 1 3 5 5 C 1.52994 * 109.47015 * 175.00068 * 4 2 1 6 6 C 1.53008 * 109.47015 * 180.02562 * 5 4 2 7 7 C 1.52994 * 109.47015 * 180.02562 * 6 5 4 8 8 N 1.46903 * 109.46866 * 179.97438 * 7 6 5 9 9 C 1.46901 * 110.99880 * 179.97438 * 8 7 6 10 10 C 1.50707 * 109.47021 * 179.97438 * 9 8 7 11 11 O 1.21294 * 119.99894 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00025 * 180.02562 * 10 9 8 13 13 C 1.37095 * 119.99915 * 180.02562 * 12 10 9 14 14 H 1.08004 * 120.00011 * 359.97438 * 13 12 10 15 15 C 1.38952 * 120.00126 * 179.97438 * 13 12 10 16 16 N 1.31411 * 119.99614 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00301 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47035 * 90.00197 * 17 15 13 19 19 H 1.48502 * 109.47652 * 210.00160 * 17 15 13 20 20 H 1.48501 * 109.47311 * 330.00395 * 17 15 13 21 21 N 1.46504 * 109.47454 * 120.00317 * 2 1 3 22 22 C 1.34776 * 119.99995 * 274.99666 * 21 2 1 23 23 O 1.21285 * 120.00005 * 0.02562 * 22 21 2 24 24 C 1.50698 * 119.99935 * 179.97438 * 22 21 2 25 25 C 1.53778 * 113.61154 * 180.02562 * 24 22 21 26 26 C 1.53787 * 87.08035 * 139.98353 * 25 24 22 27 27 C 1.52992 * 113.61596 * 220.01776 * 26 25 24 28 28 C 1.53778 * 113.61544 * 277.50052 * 24 22 21 29 29 H 1.08993 * 109.47127 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46807 * 299.99718 * 1 2 3 31 31 H 1.09003 * 109.47554 * 59.99232 * 1 2 3 32 32 H 1.09001 * 109.46511 * 294.99609 * 4 2 1 33 33 H 1.08997 * 109.47004 * 54.99788 * 4 2 1 34 34 H 1.09005 * 109.47268 * 299.99653 * 5 4 2 35 35 H 1.08997 * 109.47463 * 60.00001 * 5 4 2 36 36 H 1.09005 * 109.46819 * 299.99928 * 6 5 4 37 37 H 1.08997 * 109.47004 * 59.99720 * 6 5 4 38 38 H 1.09001 * 109.47106 * 299.99177 * 7 6 5 39 39 H 1.08997 * 109.47463 * 60.00001 * 7 6 5 40 40 H 1.00906 * 110.99966 * 56.04758 * 8 7 6 41 41 H 1.08997 * 109.47402 * 299.99739 * 9 8 7 42 42 H 1.09000 * 109.46923 * 60.00463 * 9 8 7 43 43 H 0.96998 * 119.99878 * 359.97438 * 12 10 9 44 44 H 0.97003 * 120.00151 * 179.97438 * 16 15 13 45 45 H 0.96998 * 119.99607 * 94.99650 * 21 2 1 46 46 H 1.09004 * 112.90161 * 48.75364 * 24 22 21 47 47 H 1.08998 * 113.61879 * 25.43835 * 25 24 22 48 48 H 1.08999 * 113.61887 * 254.52942 * 25 24 22 49 49 H 1.09004 * 113.61202 * 89.11582 * 26 25 24 50 50 H 1.09008 * 109.47336 * 60.00442 * 27 26 25 51 51 H 1.09003 * 109.47337 * 179.97438 * 27 26 25 52 52 H 1.08993 * 109.47460 * 299.99983 * 27 26 25 53 53 H 1.08993 * 113.61229 * 105.47308 * 28 24 22 54 54 H 1.09000 * 113.61263 * 334.56958 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5647 -0.6132 -1.3138 6 6 4.0746 -1.3339 -2.5635 7 6 5.5995 -1.2265 -2.6276 8 7 6.0891 -1.9189 -3.8271 9 6 7.5526 -1.8359 -3.9224 10 6 8.0170 -2.5562 -5.1620 11 8 7.2083 -3.0862 -5.8943 12 7 9.3310 -2.6116 -5.4568 13 6 9.7534 -3.2664 -6.5848 14 1 9.0332 -3.7383 -7.2369 15 6 11.1080 -3.3231 -6.8891 16 7 11.9841 -2.7485 -6.0959 17 14 11.6836 -4.2159 -8.4256 18 1 11.7211 -3.2651 -9.5658 19 1 13.0428 -4.7686 -8.1971 20 1 10.7444 -5.3237 -8.7355 21 7 2.0184 -0.6907 1.1961 22 6 2.1472 -0.0184 2.3571 23 8 1.8583 1.1583 2.4118 24 6 2.6490 -0.7290 3.5876 25 6 2.7382 0.1756 4.8280 26 6 2.2037 -1.0168 5.6389 27 6 1.1895 -0.6215 6.7140 28 6 1.5570 -1.5123 4.3351 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.7516 -1.7715 -1.2057 33 1 1.6053 -0.2616 -2.1370 34 1 3.8531 0.4371 -1.3574 35 1 3.9994 -1.0728 -0.4262 36 1 3.7862 -2.3842 -2.5203 37 1 3.6400 -0.8739 -3.4509 38 1 5.8882 -0.1763 -2.6706 39 1 6.0338 -1.6867 -1.7402 40 1 5.6515 -1.5533 -4.6596 41 1 7.8546 -0.7899 -3.9750 42 1 8.0008 -2.2998 -3.0437 43 1 9.9777 -2.1875 -4.8714 44 1 12.9298 -2.7883 -6.3081 45 1 2.2490 -1.6318 1.1525 46 1 3.5537 -1.3085 3.4035 47 1 2.0556 1.0249 4.7990 48 1 3.7576 0.4594 5.0892 49 1 2.9869 -1.6746 6.0158 50 1 0.3330 -0.1371 6.2451 51 1 0.8564 -1.5134 7.2448 52 1 1.6562 0.0675 7.4180 53 1 1.6227 -2.5916 4.1981 54 1 0.5517 -1.1242 4.1713 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170110454.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:02 Heat of formation + Delta-G solvation = -110.579902 kcal Electronic energy + Delta-G solvation = -28274.550555 eV Core-core repulsion = 24244.511854 eV Total energy + Delta-G solvation = -4030.038701 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.40195 -40.16859 -39.19874 -37.89221 -36.88830 -35.91151 -34.30727 -33.26648 -32.28792 -30.68271 -29.66985 -27.64417 -26.58990 -25.96360 -25.47896 -23.65240 -22.08877 -21.78135 -21.34909 -21.02428 -20.25350 -19.90333 -18.15247 -17.83386 -17.34951 -17.02138 -16.61061 -16.51104 -16.03671 -15.91319 -15.81935 -15.33379 -15.22376 -15.16620 -14.60537 -14.44936 -14.33610 -14.04821 -13.78061 -13.65119 -13.48604 -13.42010 -13.33433 -13.16767 -13.04805 -12.95130 -12.78483 -12.42638 -12.33311 -12.25491 -12.12330 -12.10528 -11.85025 -11.74494 -11.57675 -11.51441 -11.44801 -11.39669 -11.10804 -10.59844 -10.35921 -10.04098 -10.02486 -9.33004 -8.47191 -5.96290 1.38155 1.42107 1.55074 1.66045 2.03928 2.28713 2.29205 2.92211 3.19947 3.49475 3.52843 3.64039 3.74535 3.79618 3.84932 4.01009 4.04718 4.23070 4.28663 4.31539 4.32909 4.46806 4.50267 4.52197 4.55142 4.62266 4.65029 4.74773 4.78223 4.80687 4.85793 4.87892 4.90633 4.93647 4.94727 4.98602 5.07519 5.12453 5.19877 5.20846 5.29696 5.38444 5.39190 5.40333 5.49345 5.58184 5.65027 5.89888 6.11544 6.41210 6.59284 6.62791 7.11683 7.32458 7.55011 8.10236 8.70191 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.018563 B = 0.001381 C = 0.001314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.019198 B =20271.423015 C =21301.817354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.141 3.859 3 H 0.063 0.937 4 C -0.117 4.117 5 C -0.109 4.109 6 C -0.109 4.109 7 C 0.059 3.941 8 N -0.685 5.685 9 C 0.064 3.936 10 C 0.436 3.564 11 O -0.624 6.624 12 N -0.572 5.572 13 C -0.337 4.337 14 H 0.079 0.921 15 C -0.012 4.012 16 N -0.920 5.920 17 Si 0.994 3.006 18 H -0.271 1.271 19 H -0.270 1.270 20 H -0.273 1.273 21 N -0.711 5.711 22 C 0.519 3.481 23 O -0.589 6.589 24 C -0.138 4.138 25 C -0.123 4.123 26 C -0.109 4.109 27 C -0.143 4.143 28 C -0.112 4.112 29 H 0.069 0.931 30 H 0.037 0.963 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.054 0.946 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.032 0.968 39 H 0.076 0.924 40 H 0.343 0.657 41 H 0.064 0.936 42 H 0.103 0.897 43 H 0.396 0.604 44 H 0.278 0.722 45 H 0.413 0.587 46 H 0.135 0.865 47 H 0.070 0.930 48 H 0.073 0.927 49 H 0.108 0.892 50 H 0.046 0.954 51 H 0.065 0.935 52 H 0.057 0.943 53 H 0.095 0.905 54 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.058 4.291 23.966 32.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.036 3.964 3 H 0.082 0.918 4 C -0.155 4.155 5 C -0.147 4.147 6 C -0.147 4.147 7 C -0.070 4.070 8 N -0.317 5.317 9 C -0.068 4.068 10 C 0.224 3.776 11 O -0.510 6.510 12 N -0.210 5.210 13 C -0.466 4.466 14 H 0.097 0.903 15 C -0.212 4.212 16 N -0.561 5.561 17 Si 0.817 3.183 18 H -0.196 1.196 19 H -0.195 1.195 20 H -0.197 1.197 21 N -0.363 5.363 22 C 0.307 3.693 23 O -0.469 6.469 24 C -0.159 4.159 25 C -0.160 4.160 26 C -0.127 4.127 27 C -0.201 4.201 28 C -0.150 4.150 29 H 0.088 0.912 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.050 0.950 39 H 0.094 0.906 40 H 0.161 0.839 41 H 0.081 0.919 42 H 0.121 0.879 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.250 0.750 46 H 0.153 0.847 47 H 0.089 0.911 48 H 0.092 0.908 49 H 0.126 0.874 50 H 0.065 0.935 51 H 0.084 0.916 52 H 0.076 0.924 53 H 0.114 0.886 54 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -21.580 4.166 23.790 32.388 hybrid contribution 1.067 0.653 -0.919 1.552 sum -20.513 4.819 22.871 31.098 Atomic orbital electron populations 1.22114 0.94912 1.02692 1.01884 1.20953 0.94154 0.96687 0.84576 0.91843 1.21834 0.95279 1.01850 0.96542 1.21465 0.95472 1.00242 0.97522 1.21483 0.93264 1.01498 0.98430 1.22089 0.96482 0.95827 0.92556 1.60129 1.03707 1.61338 1.06534 1.21536 0.90332 0.98980 0.95967 1.20899 0.82448 0.85118 0.89168 1.90483 1.54256 1.52071 1.54204 1.41934 1.06303 1.49180 1.23549 1.19691 0.92435 1.32186 1.02292 0.90295 1.26049 0.95104 0.98028 1.01988 1.69674 1.02951 1.44484 1.38984 0.84915 0.77633 0.78288 0.77424 1.19599 1.19483 1.19748 1.46090 1.66531 1.14619 1.09033 1.21007 0.76435 0.86638 0.85262 1.90669 1.52337 1.18223 1.85673 1.22860 1.02101 0.99826 0.91109 1.22905 1.02033 0.97167 0.93945 1.22483 0.98824 0.97192 0.94196 1.21721 0.98291 1.01654 0.98404 1.22909 0.96640 1.00768 0.94644 0.91175 0.94348 0.90771 0.89807 0.89770 0.92676 0.91307 0.91280 0.92144 0.95025 0.90601 0.83884 0.91862 0.87878 0.76970 0.91268 0.74978 0.84725 0.91139 0.90806 0.87396 0.93502 0.91555 0.92352 0.88641 0.90912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.48 71.98 0.68 -1.38 16 2 C 0.14 1.95 2.57 44.99 0.12 2.06 16 3 H 0.06 1.21 7.58 -2.38 -0.02 1.19 16 4 C -0.12 -1.29 4.75 30.59 0.15 -1.14 16 5 C -0.11 -1.49 5.10 30.59 0.16 -1.34 16 6 C -0.11 -1.94 5.47 30.59 0.17 -1.77 16 7 C 0.06 1.33 5.69 86.30 0.49 1.82 16 8 N -0.68 -21.64 6.13 -517.93 -3.17 -24.81 16 9 C 0.06 2.24 6.17 85.56 0.53 2.76 16 10 C 0.44 21.04 7.82 87.66 0.69 21.73 16 11 O -0.62 -34.98 15.78 -3.07 -0.05 -35.03 16 12 N -0.57 -29.68 5.29 -306.98 -1.62 -31.30 16 13 C -0.34 -19.26 9.68 84.04 0.81 -18.45 16 14 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 15 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 16 N -0.92 -49.72 13.05 21.66 0.28 -49.43 16 17 Si 0.99 42.91 29.55 68.60 2.03 44.93 16 18 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 19 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 20 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 21 N -0.71 -8.78 4.53 -442.51 -2.00 -10.79 16 22 C 0.52 8.97 7.32 87.66 0.64 9.61 16 23 O -0.59 -15.68 15.56 -3.04 -0.05 -15.73 16 24 C -0.14 -1.55 4.15 -11.02 -0.05 -1.60 16 25 C -0.12 -1.62 6.97 31.12 0.22 -1.41 16 26 C -0.11 -0.96 4.36 -10.28 -0.04 -1.00 16 27 C -0.14 -1.29 9.71 71.98 0.70 -0.59 16 28 C -0.11 -0.96 7.18 31.11 0.22 -0.74 16 29 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 35 H 0.07 0.88 7.75 -2.39 -0.02 0.86 16 36 H 0.07 1.30 8.14 -2.38 -0.02 1.29 16 37 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 39 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.34 11.39 8.43 -89.69 -0.76 10.63 16 41 H 0.06 1.95 8.14 -2.39 -0.02 1.94 16 42 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 43 H 0.40 19.47 7.90 -92.71 -0.73 18.74 16 44 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 45 H 0.41 2.93 8.60 -92.71 -0.80 2.13 16 46 H 0.13 0.94 8.14 -2.38 -0.02 0.92 16 47 H 0.07 1.29 7.39 -2.39 -0.02 1.27 16 48 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 50 H 0.05 0.50 7.94 -2.38 -0.02 0.48 16 51 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 52 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 53 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 54 H 0.07 0.82 7.91 -2.39 -0.02 0.80 16 Total: -1.00 -73.38 438.66 -0.04 -73.43 By element: Atomic # 1 Polarization: 41.73 SS G_CDS: -1.40 Total: 40.33 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: 5.94 Total: 8.39 kcal Atomic # 7 Polarization: -109.81 SS G_CDS: -6.52 Total: -116.33 kcal Atomic # 8 Polarization: -50.66 SS G_CDS: -0.10 Total: -50.75 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 2.03 Total: 44.93 kcal Total: -73.38 -0.04 -73.43 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170110454.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.152 kcal (2) G-P(sol) polarization free energy of solvation -73.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds