Wall clock time and date at job start Sat Apr 11 2020 05:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45202 * 109.46919 * 2 1 4 4 C 1.34230 * 116.99836 * 180.02562 * 3 2 1 5 5 O 1.20833 * 119.99930 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00262 * 180.27336 * 4 3 2 7 7 H 1.09004 * 109.46801 * 299.72165 * 6 4 3 8 8 N 1.46896 * 109.47652 * 179.72202 * 6 4 3 9 9 C 1.46896 * 111.00228 * 154.99876 * 8 6 4 10 10 C 1.52998 * 109.47020 * 275.00027 * 9 8 6 11 11 C 1.53008 * 109.47089 * 180.02562 * 10 9 8 12 12 C 1.52997 * 109.47160 * 59.99838 * 11 10 9 13 13 C 1.50693 * 109.47281 * 180.02562 * 12 11 10 14 14 H 1.08002 * 120.00038 * 119.99423 * 13 12 11 15 15 C 1.37878 * 120.00263 * 300.00164 * 13 12 11 16 16 N 1.31520 * 119.99714 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00404 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47246 * 0.02562 * 17 15 13 19 19 H 1.48508 * 109.47040 * 120.00073 * 17 15 13 20 20 H 1.48493 * 109.47103 * 239.99925 * 17 15 13 21 21 C 1.52998 * 109.47252 * 300.00062 * 12 11 10 22 22 C 1.53000 * 109.47211 * 60.00078 * 21 12 11 23 23 C 1.53006 * 109.47194 * 59.71653 * 6 4 3 24 24 C 1.53178 * 109.54099 * 59.82778 * 23 6 4 25 25 C 1.53103 * 109.15991 * 183.24276 * 24 23 6 26 26 O 1.42901 * 109.48365 * 57.47017 * 25 24 23 27 27 C 1.42903 * 114.09872 * 298.89050 * 26 25 24 28 28 C 1.53085 * 109.41475 * 61.16201 * 27 26 25 29 29 H 1.09002 * 109.47633 * 60.00402 * 1 2 3 30 30 H 1.08999 * 109.47371 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47687 * 300.00275 * 1 2 3 32 32 H 1.08998 * 109.47242 * 239.99429 * 2 1 3 33 33 H 1.09004 * 109.46797 * 119.99245 * 2 1 3 34 34 H 1.00907 * 111.00013 * 278.95284 * 8 6 4 35 35 H 1.08994 * 109.47385 * 35.00431 * 9 8 6 36 36 H 1.09004 * 109.47239 * 299.99830 * 10 9 8 37 37 H 1.08997 * 109.47387 * 60.00068 * 10 9 8 38 38 H 1.08994 * 109.46701 * 300.00018 * 11 10 9 39 39 H 1.08997 * 109.47103 * 179.97438 * 11 10 9 40 40 H 1.09001 * 109.47494 * 59.99888 * 12 11 10 41 41 H 0.96996 * 119.99981 * 180.02562 * 16 15 13 42 42 H 1.09004 * 109.47239 * 300.00309 * 21 12 11 43 43 H 1.08997 * 109.47387 * 180.02562 * 21 12 11 44 44 H 1.08996 * 109.47465 * 179.97438 * 22 21 12 45 45 H 1.09002 * 109.47548 * 60.00157 * 22 21 12 46 46 H 1.08996 * 109.54517 * 180.02562 * 23 6 4 47 47 H 1.09006 * 109.52400 * 303.05813 * 24 23 6 48 48 H 1.09000 * 109.52679 * 63.24179 * 24 23 6 49 49 H 1.09007 * 109.39925 * 297.49506 * 25 24 23 50 50 H 1.08991 * 109.49444 * 177.50927 * 25 24 23 51 51 H 1.08998 * 109.47990 * 301.17538 * 27 26 25 52 52 H 1.09004 * 109.47542 * 181.14665 * 27 26 25 53 53 H 1.09001 * 109.52455 * 182.47788 * 28 27 26 54 54 H 1.09009 * 109.57617 * 62.32672 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5449 -0.0005 5 8 4.0807 0.5866 -0.0005 6 6 3.9207 2.9374 0.0057 7 1 3.5878 3.4722 -0.8839 8 7 5.3876 2.8606 0.0105 9 6 5.9803 4.0759 -0.5634 10 6 6.0438 3.9423 -2.0862 11 6 6.6618 5.2080 -2.6840 12 6 8.0751 5.3965 -2.1292 13 6 8.6836 6.6433 -2.7174 14 1 8.9939 7.4500 -2.0698 15 6 8.8440 6.7544 -4.0823 16 7 8.4655 5.7723 -4.8709 17 14 9.5975 8.3003 -4.8115 18 1 9.9358 9.2485 -3.7198 19 1 10.8313 7.9450 -5.5579 20 1 8.6253 8.9360 -5.7364 21 6 8.0116 5.5301 -0.6064 22 6 7.3937 4.2645 -0.0086 23 6 3.4447 3.6807 1.2555 24 6 3.9079 2.9281 2.5067 25 6 3.3590 3.6338 3.7495 26 8 1.9337 3.6990 3.6702 27 6 1.4449 4.4328 2.5455 28 6 1.9150 3.7579 1.2544 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8932 -0.5137 0.8901 34 1 5.7379 2.6924 0.9417 35 1 5.3682 4.9383 -0.2995 36 1 6.6561 3.0800 -2.3501 37 1 5.0370 3.8076 -2.4815 38 1 6.0499 6.0705 -2.4201 39 1 6.7075 5.1126 -3.7688 40 1 8.6871 4.5339 -2.3929 41 1 8.5787 5.8502 -5.8311 42 1 7.3997 6.3927 -0.3425 43 1 9.0185 5.6648 -0.2111 44 1 7.3489 4.3595 1.0763 45 1 8.0056 3.4018 -0.2724 46 1 3.8604 4.6883 1.2609 47 1 3.5339 1.9046 2.4755 48 1 4.9973 2.9177 2.5432 49 1 3.7668 4.6433 3.8024 50 1 3.6484 3.0777 4.6411 51 1 1.8276 5.4527 2.5828 52 1 0.3553 4.4521 2.5699 53 1 1.5803 4.3405 0.3961 54 1 1.4995 2.7518 1.1959 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173328788.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:05 Heat of formation + Delta-G solvation = -173.171757 kcal Electronic energy + Delta-G solvation = -31829.406882 eV Core-core repulsion = 27764.361244 eV Total energy + Delta-G solvation = -4065.045639 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.224 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.01116 -40.24335 -39.59006 -37.79914 -36.95415 -34.99019 -33.45692 -32.58543 -32.03425 -31.39276 -30.54898 -28.16168 -26.01230 -25.24676 -24.49219 -23.82265 -23.25228 -22.20484 -21.98876 -20.77824 -20.34569 -18.59553 -18.37918 -18.00560 -17.47000 -17.18829 -16.92522 -16.59287 -16.11348 -15.77196 -15.62684 -15.50715 -15.35736 -14.71814 -14.69828 -14.66620 -14.45805 -14.34132 -13.96040 -13.62486 -13.40953 -13.26500 -13.11684 -12.93794 -12.89132 -12.76506 -12.60678 -12.52994 -12.39623 -12.18267 -12.14843 -12.02876 -11.91045 -11.72530 -11.55861 -11.46995 -11.32317 -11.16512 -11.10867 -10.73108 -10.56638 -10.47079 -10.34834 -9.40898 -8.04945 -6.19032 1.22033 1.40195 1.42507 1.53253 1.55561 2.44858 2.99022 3.08521 3.21807 3.50461 3.56494 3.69031 3.90116 3.93986 4.01395 4.05945 4.07560 4.09981 4.21296 4.34253 4.36320 4.38132 4.45777 4.58347 4.60868 4.66192 4.69094 4.74507 4.80790 4.84072 4.85062 4.85517 4.89297 4.94234 4.97102 4.98956 5.07530 5.14060 5.16087 5.19187 5.31727 5.42013 5.43224 5.52225 5.53315 5.63503 5.71805 5.97330 6.07666 6.22447 6.28404 6.38304 6.44184 6.82509 6.95138 7.49203 8.98909 Molecular weight = 339.22amu Principal moments of inertia in cm(-1) A = 0.015066 B = 0.002779 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.071166 B =10074.566145 C =10928.756740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.050 3.950 3 O -0.350 6.350 4 C 0.470 3.530 5 O -0.523 6.523 6 C 0.105 3.895 7 H 0.117 0.883 8 N -0.677 5.677 9 C 0.109 3.891 10 C -0.095 4.095 11 C -0.099 4.099 12 C 0.043 3.957 13 C -0.531 4.531 14 H 0.053 0.947 15 C 0.010 3.990 16 N -0.918 5.918 17 Si 0.950 3.050 18 H -0.266 1.266 19 H -0.284 1.284 20 H -0.281 1.281 21 C -0.097 4.097 22 C -0.108 4.108 23 C -0.108 4.108 24 C -0.152 4.152 25 C 0.065 3.935 26 O -0.402 6.402 27 C 0.061 3.939 28 C -0.159 4.159 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.352 0.648 35 H 0.058 0.942 36 H 0.037 0.963 37 H 0.048 0.952 38 H 0.033 0.967 39 H 0.054 0.946 40 H -0.013 1.013 41 H 0.258 0.742 42 H 0.054 0.946 43 H 0.048 0.952 44 H 0.080 0.920 45 H 0.052 0.948 46 H 0.097 0.903 47 H 0.053 0.947 48 H 0.082 0.918 49 H 0.063 0.937 50 H 0.104 0.896 51 H 0.058 0.942 52 H 0.106 0.894 53 H 0.086 0.914 54 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.270 -6.336 16.282 25.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.023 4.023 3 O -0.267 6.267 4 C 0.313 3.687 5 O -0.411 6.411 6 C -0.006 4.006 7 H 0.134 0.866 8 N -0.311 5.311 9 C 0.001 3.999 10 C -0.133 4.133 11 C -0.137 4.137 12 C 0.025 3.975 13 C -0.569 4.569 14 H 0.071 0.929 15 C -0.188 4.188 16 N -0.558 5.558 17 Si 0.777 3.223 18 H -0.190 1.190 19 H -0.210 1.210 20 H -0.207 1.207 21 C -0.135 4.135 22 C -0.146 4.146 23 C -0.128 4.128 24 C -0.190 4.190 25 C -0.012 4.012 26 O -0.321 6.321 27 C -0.016 4.016 28 C -0.197 4.197 29 H 0.087 0.913 30 H 0.115 0.885 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.175 0.825 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.066 0.934 38 H 0.051 0.949 39 H 0.073 0.927 40 H 0.005 0.995 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.066 0.934 44 H 0.099 0.901 45 H 0.071 0.929 46 H 0.115 0.885 47 H 0.072 0.928 48 H 0.100 0.900 49 H 0.081 0.919 50 H 0.122 0.878 51 H 0.076 0.924 52 H 0.124 0.876 53 H 0.105 0.895 54 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.149 -7.158 15.658 25.016 hybrid contribution 0.931 0.971 -0.705 1.519 sum -17.218 -6.187 14.953 23.629 Atomic orbital electron populations 1.21800 0.90240 1.04236 1.03766 1.23237 0.97167 0.79891 1.02030 1.86591 1.23664 1.32830 1.83628 1.23902 0.80699 0.92635 0.71513 1.90644 1.61126 1.43754 1.45540 1.21259 0.89196 0.88909 1.01282 0.86561 1.60023 1.03106 1.38907 1.29022 1.21383 0.95012 0.89440 0.94098 1.21491 0.99048 0.97840 0.94956 1.21383 0.96647 0.94520 1.01175 1.18643 0.92865 0.94321 0.91670 1.21669 1.39878 1.03207 0.92120 0.92919 1.25753 0.96149 0.99017 0.97922 1.70048 1.48578 1.33248 1.03896 0.85621 0.78050 0.80238 0.78431 1.19010 1.21022 1.20684 1.21439 0.99279 0.96575 0.96228 1.21620 0.94967 0.98178 0.99833 1.21809 0.98011 1.00103 0.92905 1.22264 1.01743 0.99456 0.95513 1.22594 0.80678 1.00455 0.97473 1.87905 1.21585 1.75620 1.46965 1.22691 1.00271 0.94208 0.84395 1.22496 0.93682 1.04185 0.99354 0.91256 0.88513 0.91041 0.92104 0.91713 0.82487 0.92384 0.94460 0.93358 0.94864 0.92727 0.99499 0.93275 0.92686 0.93369 0.90115 0.92934 0.88520 0.92800 0.89968 0.91896 0.87835 0.92411 0.87551 0.89503 0.89142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 10.29 71.98 0.74 -0.93 16 2 C 0.05 0.93 6.19 71.98 0.45 1.37 16 3 O -0.35 -7.70 7.08 -51.41 -0.36 -8.07 16 4 C 0.47 12.46 5.95 71.23 0.42 12.88 16 5 O -0.52 -17.42 16.18 21.94 0.36 -17.06 16 6 C 0.11 2.48 2.23 44.17 0.10 2.58 16 7 H 0.12 2.77 7.11 -2.38 -0.02 2.75 16 8 N -0.68 -18.49 5.54 -473.32 -2.62 -21.12 16 9 C 0.11 3.32 2.31 44.92 0.10 3.42 16 10 C -0.10 -3.67 5.41 30.60 0.17 -3.51 16 11 C -0.10 -4.61 4.98 30.60 0.15 -4.46 16 12 C 0.04 2.15 2.10 -11.54 -0.02 2.13 16 13 C -0.53 -29.12 8.56 25.60 0.22 -28.90 16 14 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 15 C 0.01 0.54 5.30 84.65 0.45 0.99 16 16 N -0.92 -53.76 11.32 21.45 0.24 -53.52 16 17 Si 0.95 43.77 29.54 68.60 2.03 45.79 16 18 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 19 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 21 C -0.10 -3.78 5.14 30.59 0.16 -3.62 16 22 C -0.11 -3.41 5.19 30.60 0.16 -3.25 16 23 C -0.11 -1.94 2.16 -10.67 -0.02 -1.97 16 24 C -0.15 -2.67 4.88 30.69 0.15 -2.52 16 25 C 0.06 1.00 6.84 72.02 0.49 1.50 16 26 O -0.40 -7.51 10.77 -148.98 -1.60 -9.11 16 27 C 0.06 0.89 6.84 72.01 0.49 1.38 16 28 C -0.16 -2.55 5.01 30.68 0.15 -2.39 16 29 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.06 1.21 8.13 -2.39 -0.02 1.19 16 33 H 0.06 1.22 8.13 -2.38 -0.02 1.20 16 34 H 0.35 8.64 5.97 -89.69 -0.54 8.10 16 35 H 0.06 1.62 7.12 -2.39 -0.02 1.60 16 36 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.05 1.73 7.43 -2.39 -0.02 1.71 16 38 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.05 2.97 6.07 -2.39 -0.01 2.96 16 40 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 41 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 42 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.08 1.99 8.12 -2.39 -0.02 1.97 16 45 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.10 1.64 7.43 -2.39 -0.02 1.62 16 47 H 0.05 1.14 7.12 -2.38 -0.02 1.12 16 48 H 0.08 1.36 6.42 -2.39 -0.02 1.34 16 49 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 50 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 51 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 52 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 53 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 54 H 0.09 1.65 5.12 -2.38 -0.01 1.64 16 Total: -1.00 -67.11 405.33 2.72 -64.39 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: 0.33 Total: 23.98 kcal Atomic # 6 Polarization: -29.63 SS G_CDS: 4.36 Total: -25.28 kcal Atomic # 7 Polarization: -72.26 SS G_CDS: -2.38 Total: -74.64 kcal Atomic # 8 Polarization: -32.63 SS G_CDS: -1.61 Total: -34.24 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -67.11 2.72 -64.39 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173328788.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.783 kcal (2) G-P(sol) polarization free energy of solvation -67.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds