Wall clock time and date at job start Sat Apr 11 2020 05:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08996 * 109.47189 * 2 1 4 4 C 1.53008 * 109.47111 * 119.99919 * 2 1 3 5 5 C 1.53002 * 109.47142 * 185.00371 * 4 2 1 6 6 C 1.52995 * 109.47023 * 180.02562 * 5 4 2 7 7 C 1.53004 * 109.47117 * 179.97438 * 6 5 4 8 8 N 1.46496 * 109.47212 * 179.97438 * 7 6 5 9 9 C 1.36941 * 119.99989 * 180.02562 * 8 7 6 10 10 H 1.07989 * 120.00057 * 0.02562 * 9 8 7 11 11 C 1.38814 * 119.99835 * 180.02562 * 9 8 7 12 12 N 1.31624 * 120.00052 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 119.99759 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47296 * 90.00506 * 13 11 9 15 15 H 1.48508 * 109.47228 * 210.00081 * 13 11 9 16 16 H 1.48496 * 109.47529 * 329.99802 * 13 11 9 17 17 N 1.46494 * 109.47349 * 239.99941 * 2 1 3 18 18 C 1.34783 * 120.00041 * 85.00028 * 17 2 1 19 19 O 1.21340 * 119.99862 * 0.02562 * 18 17 2 20 20 C 1.49448 * 119.99774 * 180.02562 * 18 17 2 21 21 O 1.21351 * 120.00400 * 353.71982 * 20 18 17 22 22 N 1.34782 * 119.99815 * 173.44858 * 20 18 17 23 23 C 1.46930 * 120.62730 * 352.63794 * 22 20 18 24 24 C 1.53626 * 108.54335 * 126.37364 * 23 22 20 25 25 C 1.53041 * 109.23947 * 54.85063 * 24 23 22 26 26 C 1.53004 * 109.44558 * 178.49947 * 25 24 23 27 27 C 1.53037 * 109.54204 * 298.51248 * 25 24 23 28 28 C 1.46922 * 120.63120 * 172.92338 * 22 20 18 29 29 H 1.09003 * 109.46876 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47113 * 299.99688 * 1 2 3 31 31 H 1.09000 * 109.47332 * 60.00166 * 1 2 3 32 32 H 1.08997 * 109.46848 * 304.99765 * 4 2 1 33 33 H 1.08995 * 109.46647 * 65.00132 * 4 2 1 34 34 H 1.09004 * 109.46748 * 299.99857 * 5 4 2 35 35 H 1.08994 * 109.47158 * 59.99640 * 5 4 2 36 36 H 1.08997 * 109.47397 * 299.99656 * 6 5 4 37 37 H 1.09002 * 109.47626 * 60.00050 * 6 5 4 38 38 H 1.08997 * 109.47012 * 300.00266 * 7 6 5 39 39 H 1.09007 * 109.46968 * 59.99905 * 7 6 5 40 40 H 0.97008 * 119.99992 * 0.02562 * 8 7 6 41 41 H 0.97004 * 120.00007 * 179.97438 * 12 11 9 42 42 H 0.97000 * 120.00143 * 265.00095 * 17 2 1 43 43 H 1.08998 * 109.58530 * 246.20513 * 23 22 20 44 44 H 1.08998 * 109.59013 * 6.63065 * 23 22 20 45 45 H 1.09002 * 109.63125 * 294.86873 * 24 23 22 46 46 H 1.08996 * 109.43246 * 174.72196 * 24 23 22 47 47 H 1.08996 * 109.46040 * 58.54130 * 25 24 23 48 48 H 1.08998 * 109.47225 * 180.02562 * 26 25 24 49 49 H 1.08998 * 109.47199 * 300.06805 * 26 25 24 50 50 H 1.08998 * 109.47236 * 60.06679 * 26 25 24 51 51 H 1.09002 * 109.49688 * 301.41382 * 27 25 24 52 52 H 1.09006 * 109.49657 * 181.32031 * 27 25 24 53 53 H 1.09005 * 109.58772 * 353.36559 * 28 22 20 54 54 H 1.09002 * 109.58590 * 113.65593 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.6132 1.3138 6 6 4.0748 -1.3350 2.5627 7 6 5.5997 -1.2275 2.6269 8 7 6.0880 -1.9181 3.8230 9 6 7.4301 -1.9544 4.0928 10 1 8.1285 -1.4736 3.4240 11 6 7.8928 -2.6092 5.2259 12 7 7.0417 -3.1956 6.0408 13 14 9.7235 -2.6581 5.5942 14 1 10.0928 -1.4841 6.4252 15 1 10.0472 -3.9067 6.3300 16 1 10.4859 -2.6225 4.3204 17 7 2.0183 -0.6906 -1.1961 18 6 2.1471 -0.0182 -2.3571 19 8 1.8589 1.1592 -2.4115 20 6 2.6448 -0.7229 -3.5774 21 8 3.0404 -1.8674 -3.4983 22 7 2.6490 -0.0891 -4.7669 23 6 2.0219 1.2314 -4.9137 24 6 3.0518 2.1968 -5.5199 25 6 3.5878 1.6070 -6.8265 26 6 4.5865 2.5819 -7.4535 27 6 4.2865 0.2762 -6.5388 28 6 3.2754 -0.7084 -5.9428 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6054 -0.2617 2.1370 33 1 1.7516 -1.7715 1.2056 34 1 3.9994 -1.0728 0.4261 35 1 3.8531 0.4370 1.3574 36 1 3.6402 -0.8759 3.4506 37 1 3.7866 -2.3853 2.5186 38 1 6.0340 -1.6868 1.7389 39 1 5.8884 -0.1773 2.6708 40 1 5.4607 -2.3497 4.4240 41 1 7.3650 -3.6536 6.8325 42 1 2.2490 -1.6317 -1.1525 43 1 1.1573 1.1541 -5.5730 44 1 1.7072 1.5973 -3.9364 45 1 3.8756 2.3398 -4.8206 46 1 2.5749 3.1557 -5.7223 47 1 2.7604 1.4411 -7.5164 48 1 4.9681 2.1625 -8.3844 49 1 4.0890 3.5299 -7.6585 50 1 5.4143 2.7476 -6.7641 51 1 5.0986 0.4375 -5.8298 52 1 4.6884 -0.1317 -7.4663 53 1 3.7882 -1.6230 -5.6447 54 1 2.5106 -0.9430 -6.6833 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175588737.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:27 Heat of formation + Delta-G solvation = -94.587308 kcal Electronic energy + Delta-G solvation = -29692.035779 eV Core-core repulsion = 25662.690569 eV Total energy + Delta-G solvation = -4029.345210 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.11633 -40.17606 -38.84255 -38.15575 -36.94257 -35.12488 -34.65872 -33.01530 -32.11436 -31.69926 -29.46981 -28.83762 -26.49317 -25.85583 -24.37866 -24.00454 -23.29415 -22.07235 -21.78801 -21.68944 -20.51580 -19.14868 -18.79953 -18.21591 -17.22997 -16.99900 -16.70675 -16.33095 -16.10475 -15.86682 -15.54527 -15.40718 -15.28265 -15.15461 -15.07232 -14.63457 -14.45960 -14.32769 -14.18191 -13.98705 -13.79190 -13.24399 -13.03282 -12.91011 -12.85559 -12.81364 -12.75513 -12.56702 -12.46971 -12.28651 -12.18771 -12.16641 -11.90683 -11.89137 -11.81979 -11.51443 -11.45336 -11.42675 -11.36026 -10.95506 -10.30908 -10.10376 -9.82175 -9.03182 -7.97963 -5.27427 0.27031 1.26328 1.45228 1.47650 1.56267 2.06237 2.43676 2.54029 3.22593 3.34991 3.58014 3.79056 3.83088 3.86814 3.98468 4.03296 4.10147 4.11913 4.30373 4.32912 4.37739 4.40717 4.52115 4.58900 4.63128 4.67691 4.72808 4.73985 4.85675 4.86092 4.88074 4.90690 4.94729 4.98891 4.99648 5.03894 5.06670 5.13875 5.15763 5.25506 5.32089 5.33426 5.34571 5.44170 5.45150 5.49885 5.51174 5.59064 5.95304 6.19707 6.24917 6.66078 6.89647 7.30449 8.06812 8.30736 9.25553 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.011775 B = 0.001972 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.438441 B =14192.173636 C =15745.290439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.141 3.859 3 H 0.086 0.914 4 C -0.119 4.119 5 C -0.108 4.108 6 C -0.112 4.112 7 C 0.147 3.853 8 N -0.749 5.749 9 C -0.251 4.251 10 H 0.072 0.928 11 C -0.078 4.078 12 N -0.969 5.969 13 Si 0.977 3.023 14 H -0.284 1.284 15 H -0.292 1.292 16 H -0.271 1.271 17 N -0.682 5.682 18 C 0.511 3.489 19 O -0.523 6.523 20 C 0.500 3.500 21 O -0.550 6.550 22 N -0.577 5.577 23 C 0.047 3.953 24 C -0.122 4.122 25 C -0.092 4.092 26 C -0.145 4.145 27 C -0.125 4.125 28 C 0.103 3.897 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.052 0.948 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.013 0.987 39 H 0.016 0.984 40 H 0.375 0.625 41 H 0.253 0.747 42 H 0.416 0.584 43 H 0.080 0.920 44 H 0.145 0.855 45 H 0.049 0.951 46 H 0.089 0.911 47 H 0.084 0.916 48 H 0.062 0.938 49 H 0.062 0.938 50 H 0.045 0.955 51 H 0.051 0.949 52 H 0.095 0.905 53 H 0.078 0.922 54 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.955 11.339 -28.778 35.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.037 3.963 3 H 0.104 0.896 4 C -0.157 4.157 5 C -0.146 4.146 6 C -0.150 4.150 7 C 0.021 3.979 8 N -0.391 5.391 9 C -0.383 4.383 10 H 0.090 0.910 11 C -0.270 4.270 12 N -0.619 5.619 13 Si 0.805 3.195 14 H -0.211 1.211 15 H -0.218 1.218 16 H -0.196 1.196 17 N -0.333 5.333 18 C 0.293 3.707 19 O -0.402 6.402 20 C 0.282 3.718 21 O -0.429 6.429 22 N -0.309 5.309 23 C -0.073 4.073 24 C -0.160 4.160 25 C -0.111 4.111 26 C -0.202 4.202 27 C -0.163 4.163 28 C -0.019 4.019 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.071 0.929 32 H 0.115 0.885 33 H 0.099 0.901 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.030 0.970 39 H 0.034 0.966 40 H 0.206 0.794 41 H 0.061 0.939 42 H 0.253 0.747 43 H 0.098 0.902 44 H 0.161 0.839 45 H 0.068 0.932 46 H 0.107 0.893 47 H 0.102 0.898 48 H 0.081 0.919 49 H 0.081 0.919 50 H 0.064 0.936 51 H 0.070 0.930 52 H 0.113 0.887 53 H 0.097 0.903 54 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -16.774 11.607 -28.812 35.302 hybrid contribution 1.178 -0.855 0.665 1.600 sum -15.596 10.752 -28.147 33.928 Atomic orbital electron populations 1.22132 0.93322 1.03034 1.03090 1.21257 0.95151 0.97174 0.82681 0.89591 1.21887 0.94581 1.02036 0.97157 1.21449 0.96007 1.00438 0.96683 1.21595 0.93682 1.00866 0.98871 1.20860 0.94357 0.94356 0.88331 1.42624 1.04553 1.65404 1.26562 1.19650 0.85334 1.27827 1.05479 0.90973 1.25636 1.02404 1.01122 0.97813 1.69820 1.34711 1.41784 1.15597 0.85090 0.79685 0.76806 0.77874 1.21128 1.21832 1.19582 1.46059 1.63392 1.15135 1.08757 1.20107 0.78696 0.86818 0.85095 1.90321 1.50937 1.15942 1.83028 1.20260 0.80114 0.86152 0.85261 1.90761 1.48514 1.17760 1.85860 1.48136 1.54257 1.20477 1.08038 1.23393 0.95569 0.80518 1.07849 1.21974 0.98483 0.98956 0.96571 1.21175 0.98709 0.94502 0.96713 1.21803 0.98688 0.99181 1.00560 1.21971 0.97307 0.95474 1.01526 1.21897 0.96862 0.96782 0.86347 0.91522 0.89641 0.92888 0.88456 0.90144 0.92496 0.91911 0.91878 0.92178 0.96952 0.96643 0.79363 0.93865 0.74727 0.90194 0.83883 0.93217 0.89262 0.89787 0.91864 0.91880 0.93559 0.93007 0.88693 0.90304 0.89121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 9.48 71.98 0.68 -1.45 16 2 C 0.14 2.33 2.57 44.99 0.12 2.45 16 3 H 0.09 1.62 7.58 -2.39 -0.02 1.60 16 4 C -0.12 -2.03 4.75 30.60 0.15 -1.88 16 5 C -0.11 -2.55 5.10 30.59 0.16 -2.40 16 6 C -0.11 -3.54 5.33 30.59 0.16 -3.37 16 7 C 0.15 6.20 6.26 86.38 0.54 6.74 16 8 N -0.75 -40.09 5.60 -343.45 -1.92 -42.01 16 9 C -0.25 -14.70 9.99 84.03 0.84 -13.86 16 10 H 0.07 4.08 7.83 -2.92 -0.02 4.06 16 11 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 12 N -0.97 -60.60 13.06 21.65 0.28 -60.32 16 13 Si 0.98 47.29 29.55 68.60 2.03 49.32 16 14 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 15 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 16 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 17 N -0.68 -12.86 4.52 -443.88 -2.01 -14.86 16 18 C 0.51 11.05 7.74 87.27 0.68 11.73 16 19 O -0.52 -12.03 12.77 -3.22 -0.04 -12.07 16 20 C 0.50 11.46 7.74 87.27 0.68 12.14 16 21 O -0.55 -15.32 15.95 -3.25 -0.05 -15.37 16 22 N -0.58 -10.58 2.97 -819.62 -2.43 -13.01 16 23 C 0.05 0.70 6.29 86.51 0.54 1.24 16 24 C -0.12 -1.55 5.38 30.82 0.17 -1.38 16 25 C -0.09 -0.94 2.68 -10.77 -0.03 -0.97 16 26 C -0.15 -1.32 9.19 71.98 0.66 -0.66 16 27 C -0.12 -1.50 5.36 30.67 0.16 -1.34 16 28 C 0.10 1.53 6.41 86.36 0.55 2.08 16 29 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.08 0.93 8.14 -2.39 -0.02 0.92 16 31 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.06 1.41 7.75 -2.38 -0.02 1.39 16 35 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16 40 H 0.37 20.97 7.67 -92.70 -0.71 20.26 16 41 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 42 H 0.42 7.66 8.09 -92.71 -0.75 6.91 16 43 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.14 2.64 3.79 -77.96 -0.30 2.34 16 45 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 48 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 49 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 50 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 51 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 52 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 53 H 0.08 1.44 7.06 -2.38 -0.02 1.42 16 54 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -71.35 426.44 1.51 -69.85 By element: Atomic # 1 Polarization: 34.40 SS G_CDS: -0.87 Total: 33.53 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: 6.52 Total: 4.93 kcal Atomic # 7 Polarization: -124.12 SS G_CDS: -6.08 Total: -130.20 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -0.09 Total: -27.44 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.32 kcal Total: -71.35 1.51 -69.85 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175588737.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.738 kcal (2) G-P(sol) polarization free energy of solvation -71.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds