Wall clock time and date at job start Sat Apr 11 2020 05:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47141 * 2 1 4 4 C 1.50700 * 109.47575 * 55.42208 * 3 2 1 5 5 O 1.21279 * 119.99817 * 247.10119 * 4 3 2 6 6 N 1.34778 * 119.99912 * 67.08885 * 4 3 2 7 7 C 1.46503 * 119.99614 * 175.03229 * 6 4 3 8 8 C 1.53002 * 109.46646 * 180.02562 * 7 6 4 9 9 C 1.53000 * 109.46840 * 180.02562 * 8 7 6 10 10 N 1.46895 * 109.46984 * 179.97438 * 9 8 7 11 11 C 1.46903 * 111.00057 * 179.97438 * 10 9 8 12 12 C 1.50700 * 109.47533 * 180.02562 * 11 10 9 13 13 O 1.21297 * 119.99646 * 359.97438 * 12 11 10 14 14 N 1.34772 * 120.00435 * 180.02562 * 12 11 10 15 15 C 1.37096 * 120.00001 * 179.97438 * 14 12 11 16 16 H 1.07996 * 120.00363 * 0.02562 * 15 14 12 17 17 C 1.38959 * 119.99709 * 180.02562 * 15 14 12 18 18 N 1.31411 * 120.00006 * 359.97438 * 17 15 14 19 19 Si 1.86792 * 119.99740 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47409 * 60.00101 * 19 17 15 21 21 H 1.48499 * 109.47156 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47394 * 299.99869 * 19 17 15 23 23 C 1.52997 * 109.47128 * 295.41893 * 3 2 1 24 24 C 1.53003 * 109.47424 * 180.02562 * 23 3 2 25 25 C 1.53005 * 109.46984 * 59.99858 * 24 23 3 26 26 C 1.52997 * 109.47156 * 300.00306 * 25 24 23 27 27 C 1.52997 * 109.47128 * 60.00064 * 26 25 24 28 28 H 1.09002 * 109.46863 * 64.94605 * 1 2 3 29 29 H 1.08997 * 109.47300 * 184.94481 * 1 2 3 30 30 H 1.09007 * 109.47386 * 304.94771 * 1 2 3 31 31 H 1.08998 * 109.47294 * 240.00001 * 2 1 3 32 32 H 1.09006 * 109.46995 * 119.99968 * 2 1 3 33 33 H 0.96997 * 119.99709 * 355.03951 * 6 4 3 34 34 H 1.08994 * 109.47331 * 300.00460 * 7 6 4 35 35 H 1.09001 * 109.47101 * 60.00496 * 7 6 4 36 36 H 1.08997 * 109.47005 * 299.99655 * 8 7 6 37 37 H 1.08991 * 109.47234 * 60.00188 * 8 7 6 38 38 H 1.08994 * 109.47150 * 300.00069 * 9 8 7 39 39 H 1.09001 * 109.47088 * 59.99986 * 9 8 7 40 40 H 1.00904 * 111.00083 * 56.05401 * 10 9 8 41 41 H 1.08996 * 109.47383 * 300.00497 * 11 10 9 42 42 H 1.09003 * 109.47280 * 60.00291 * 11 10 9 43 43 H 0.97002 * 119.99790 * 359.97438 * 14 12 11 44 44 H 0.96999 * 119.99928 * 180.02562 * 18 17 15 45 45 H 1.08997 * 109.47315 * 59.99999 * 23 3 2 46 46 H 1.09000 * 109.47269 * 300.00251 * 23 3 2 47 47 H 1.09000 * 109.47020 * 300.00302 * 24 23 3 48 48 H 1.08995 * 109.47181 * 179.97438 * 24 23 3 49 49 H 1.09000 * 109.46879 * 60.00358 * 25 24 23 50 50 H 1.08999 * 109.47180 * 180.02562 * 25 24 23 51 51 H 1.08998 * 109.46740 * 179.97438 * 26 25 24 52 52 H 1.09000 * 109.47269 * 299.99813 * 26 25 24 53 53 H 1.09003 * 109.47459 * 179.97438 * 27 26 25 54 54 H 1.08996 * 109.47634 * 60.00049 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4472 2.1850 1.1698 5 8 0.6590 3.0867 0.9792 6 7 1.7929 1.8466 2.4278 7 6 1.3026 2.6369 3.5598 8 6 1.8384 2.0451 4.8650 9 6 1.3258 2.8700 6.0472 10 7 1.8397 2.3014 7.3004 11 6 1.3674 3.0699 8.4599 12 6 1.9141 2.4588 9.7242 13 8 2.6267 1.4790 9.6653 14 7 1.6105 3.0002 10.9205 15 6 2.1075 2.4438 12.0707 16 1 2.7426 1.5719 12.0182 17 6 1.7940 3.0017 13.3041 18 7 1.0215 4.0629 13.3680 19 14 2.4705 2.2432 14.8713 20 1 3.9549 2.2687 14.8330 21 1 1.9928 3.0199 16.0434 22 1 2.0023 0.8385 14.9836 23 6 1.6262 2.1297 -1.3028 24 6 2.1367 3.5720 -1.3032 25 6 3.6625 3.5730 -1.1883 26 6 4.0762 2.8858 0.1146 27 6 3.5657 1.4435 0.1148 28 1 -0.3633 0.4352 -0.9310 29 1 -0.3634 -1.0238 0.0886 30 1 -0.3634 0.5887 0.8424 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.3664 1.0800 2.5836 34 1 1.6461 3.6665 3.4601 35 1 0.2128 2.6171 3.5718 36 1 1.4950 1.0154 4.9649 37 1 2.9280 2.0652 4.8527 38 1 1.6687 3.8998 5.9475 39 1 0.2360 2.8494 6.0593 40 1 2.8473 2.2496 7.2876 41 1 1.7113 4.1009 8.3769 42 1 0.2779 3.0516 8.4887 43 1 1.0403 3.7835 10.9677 44 1 0.8030 4.4526 14.2290 45 1 0.5393 2.1286 -1.3849 46 1 2.0550 1.5927 -2.1489 47 1 1.7083 4.1093 -0.4570 48 1 1.8424 4.0614 -2.2315 49 1 4.0909 3.0357 -2.0344 50 1 4.0262 4.6005 -1.1880 51 1 5.1631 2.8861 0.1962 52 1 3.6478 3.4230 0.9607 53 1 3.8608 0.9537 1.0428 54 1 3.9941 0.9062 -0.7312 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176804817.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:33 Heat of formation + Delta-G solvation = -134.001861 kcal Electronic energy + Delta-G solvation = -29490.122968 eV Core-core repulsion = 25459.068615 eV Total energy + Delta-G solvation = -4031.054353 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.89539 -40.16844 -38.54420 -37.51319 -36.12724 -35.68097 -34.99353 -33.29921 -32.52359 -31.43039 -30.09089 -28.58385 -26.59972 -25.13975 -24.52181 -23.65885 -22.90068 -22.56663 -21.33266 -21.09315 -20.14170 -19.87331 -17.87706 -17.48875 -17.23345 -17.07742 -16.67446 -16.49652 -16.19900 -15.96269 -15.66489 -15.39642 -15.14837 -15.09824 -14.77224 -14.64902 -14.43852 -14.29124 -13.94313 -13.57050 -13.52898 -13.34651 -13.18800 -13.05497 -12.94216 -12.84088 -12.69023 -12.50997 -12.43621 -12.42928 -12.31340 -12.12122 -11.98621 -11.91854 -11.84102 -11.50544 -11.49926 -10.96510 -10.87773 -10.49677 -10.35346 -10.02569 -10.02069 -9.35235 -8.46909 -5.96037 1.40054 1.42002 1.53119 1.72739 2.04244 2.19612 2.30329 2.94214 3.20229 3.51318 3.58909 3.60862 3.77703 3.98447 4.02036 4.13284 4.15402 4.21496 4.23164 4.32230 4.35450 4.42663 4.47536 4.50022 4.55432 4.57491 4.60831 4.67465 4.69007 4.70521 4.76913 4.79993 4.95757 5.05946 5.08034 5.11891 5.15110 5.17733 5.20574 5.25156 5.30120 5.32703 5.37638 5.40310 5.44938 5.50660 5.63106 5.87286 6.08498 6.39845 6.59212 6.60691 7.11632 7.32689 7.55259 8.10219 8.70183 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.026326 B = 0.001513 C = 0.001501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.325524 B =18503.635685 C =18655.914878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.109 4.109 3 C -0.072 4.072 4 C 0.527 3.473 5 O -0.578 6.578 6 N -0.722 5.722 7 C 0.129 3.871 8 C -0.114 4.114 9 C 0.063 3.937 10 N -0.682 5.682 11 C 0.064 3.936 12 C 0.437 3.563 13 O -0.623 6.623 14 N -0.573 5.573 15 C -0.336 4.336 16 H 0.080 0.920 17 C -0.014 4.014 18 N -0.920 5.920 19 Si 0.995 3.005 20 H -0.271 1.271 21 H -0.271 1.271 22 H -0.272 1.272 23 C -0.092 4.092 24 C -0.132 4.132 25 C -0.117 4.117 26 C -0.124 4.124 27 C -0.105 4.105 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.030 0.970 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.411 0.589 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.040 0.960 39 H 0.077 0.923 40 H 0.346 0.654 41 H 0.066 0.934 42 H 0.103 0.897 43 H 0.396 0.604 44 H 0.278 0.722 45 H 0.054 0.946 46 H 0.087 0.913 47 H 0.052 0.948 48 H 0.060 0.940 49 H 0.077 0.923 50 H 0.055 0.945 51 H 0.077 0.923 52 H 0.038 0.962 53 H 0.079 0.921 54 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.187 -3.710 -31.942 32.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.146 4.146 3 C -0.076 4.076 4 C 0.315 3.685 5 O -0.458 6.458 6 N -0.374 5.374 7 C 0.004 3.996 8 C -0.152 4.152 9 C -0.066 4.066 10 N -0.315 5.315 11 C -0.069 4.069 12 C 0.224 3.776 13 O -0.510 6.510 14 N -0.210 5.210 15 C -0.466 4.466 16 H 0.098 0.902 17 C -0.213 4.213 18 N -0.561 5.561 19 Si 0.818 3.182 20 H -0.196 1.196 21 H -0.195 1.195 22 H -0.197 1.197 23 C -0.130 4.130 24 C -0.169 4.169 25 C -0.155 4.155 26 C -0.162 4.162 27 C -0.143 4.143 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.049 0.951 31 H 0.114 0.886 32 H 0.098 0.902 33 H 0.248 0.752 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.058 0.942 39 H 0.095 0.905 40 H 0.164 0.836 41 H 0.084 0.916 42 H 0.121 0.879 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.073 0.927 46 H 0.106 0.894 47 H 0.071 0.929 48 H 0.079 0.921 49 H 0.095 0.905 50 H 0.074 0.926 51 H 0.096 0.904 52 H 0.057 0.943 53 H 0.097 0.903 54 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.531 -4.050 -31.879 32.234 hybrid contribution 0.379 0.973 1.205 1.594 sum 2.910 -3.077 -30.674 30.965 Atomic orbital electron populations 1.21852 0.96407 1.01948 1.01246 1.21622 0.95487 0.92960 1.04554 1.20970 0.97246 0.96366 0.92974 1.20928 0.80094 0.82862 0.84616 1.90642 1.36181 1.33136 1.85830 1.45968 1.52730 1.33214 1.05485 1.21121 0.98822 0.94859 0.84767 1.21574 1.01657 1.00528 0.91452 1.21900 1.00725 0.96206 0.87789 1.60066 1.16470 1.53971 1.00983 1.21537 1.01570 0.95557 0.88203 1.20871 0.84799 0.86170 0.85730 1.90484 1.43061 1.29863 1.87550 1.41937 1.45478 1.28682 1.04914 1.19655 1.29491 1.12716 0.84710 0.90203 1.26069 0.96805 0.96462 1.01997 1.69669 1.36634 1.21995 1.27800 0.84966 0.78527 0.78153 0.76553 1.19611 1.19517 1.19708 1.21401 1.00624 0.95436 0.95528 1.21682 0.96157 0.97308 1.01758 1.21540 0.95247 1.00514 0.98154 1.21577 1.01263 0.95976 0.97368 1.21662 0.91268 0.97078 1.04245 0.92509 0.91320 0.95065 0.88587 0.90247 0.75210 0.92358 0.92463 0.90348 0.90375 0.94175 0.90498 0.83580 0.91571 0.87908 0.76974 0.91280 0.92704 0.89421 0.92949 0.92083 0.90468 0.92605 0.90446 0.94275 0.90269 0.88673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.06 9.32 71.98 0.67 -1.39 16 2 C -0.11 -1.00 4.97 30.59 0.15 -0.85 16 3 C -0.07 -0.90 0.42 -52.93 -0.02 -0.93 16 4 C 0.53 9.95 3.28 87.66 0.29 10.24 16 5 O -0.58 -15.83 13.97 -3.03 -0.04 -15.87 16 6 N -0.72 -11.24 5.35 -463.06 -2.48 -13.71 16 7 C 0.13 2.30 5.68 86.38 0.49 2.79 16 8 C -0.11 -1.98 5.59 30.59 0.17 -1.81 16 9 C 0.06 1.38 5.68 86.30 0.49 1.87 16 10 N -0.68 -20.80 6.13 -517.94 -3.17 -23.98 16 11 C 0.06 2.18 6.17 85.56 0.53 2.70 16 12 C 0.44 20.82 7.82 87.66 0.69 21.51 16 13 O -0.62 -34.45 15.78 -3.08 -0.05 -34.50 16 14 N -0.57 -29.55 5.29 -306.98 -1.62 -31.17 16 15 C -0.34 -19.16 9.68 84.04 0.81 -18.35 16 16 H 0.08 4.82 7.16 -2.91 -0.02 4.80 16 17 C -0.01 -0.72 5.50 84.93 0.47 -0.26 16 18 N -0.92 -49.79 13.05 21.67 0.28 -49.51 16 19 Si 0.99 42.88 29.55 68.60 2.03 44.91 16 20 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 21 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 22 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 23 C -0.09 -1.29 4.10 30.59 0.13 -1.16 16 24 C -0.13 -2.16 5.63 30.60 0.17 -1.99 16 25 C -0.12 -1.48 5.92 30.59 0.18 -1.30 16 26 C -0.12 -1.51 5.70 30.59 0.17 -1.33 16 27 C -0.11 -0.93 4.57 30.59 0.14 -0.79 16 28 H 0.06 0.77 6.80 -2.39 -0.02 0.75 16 29 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.03 0.56 6.90 -2.38 -0.02 0.54 16 31 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.08 0.57 8.04 -2.38 -0.02 0.55 16 33 H 0.41 4.38 7.52 -92.71 -0.70 3.69 16 34 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.35 10.87 8.43 -89.69 -0.76 10.11 16 41 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 43 H 0.40 19.41 7.90 -92.71 -0.73 18.68 16 44 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 45 H 0.05 0.95 6.54 -2.39 -0.02 0.93 16 46 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.05 1.21 5.78 -2.39 -0.01 1.20 16 48 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 49 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 50 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 51 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 52 H 0.04 0.65 7.22 -2.39 -0.02 0.63 16 53 H 0.08 0.52 7.30 -2.39 -0.02 0.51 16 54 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 Total: -1.00 -72.19 418.65 -0.81 -73.00 By element: Atomic # 1 Polarization: 43.16 SS G_CDS: -1.28 Total: 41.88 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: 5.53 Total: 8.97 kcal Atomic # 7 Polarization: -111.38 SS G_CDS: -6.99 Total: -118.38 kcal Atomic # 8 Polarization: -50.28 SS G_CDS: -0.09 Total: -50.37 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -72.19 -0.81 -73.00 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176804817.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.003 kcal (2) G-P(sol) polarization free energy of solvation -72.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds