Wall clock time and date at job start Sat Apr 11 2020 05:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86796 * 120.00437 * 2 1 4 4 H 1.48494 * 109.47211 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47003 * 299.99853 * 3 2 1 6 6 H 1.48498 * 109.47139 * 59.99210 * 3 2 1 7 7 C 1.38946 * 119.99344 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99808 * 179.97438 * 7 2 1 9 9 N 1.37092 * 120.00715 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00596 * 179.97438 * 9 7 2 11 11 O 1.21293 * 119.99868 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00334 * 179.97438 * 10 9 7 13 13 N 1.46892 * 109.47410 * 179.97438 * 12 10 9 14 14 C 1.46900 * 111.00530 * 180.02562 * 13 12 10 15 15 C 1.52991 * 109.47497 * 180.02562 * 14 13 12 16 16 C 1.52999 * 109.47258 * 179.97438 * 15 14 13 17 17 N 1.46503 * 109.47414 * 179.97438 * 16 15 14 18 18 C 1.34773 * 120.00250 * 179.97438 * 17 16 15 19 19 O 1.21280 * 120.00143 * 0.02562 * 18 17 16 20 20 C 1.50696 * 120.00115 * 180.02562 * 18 17 16 21 21 C 1.52999 * 109.47279 * 179.97438 * 20 18 17 22 22 C 1.53003 * 109.47400 * 179.97438 * 21 20 18 23 23 C 1.52994 * 109.47126 * 180.02562 * 22 21 20 24 24 C 1.54961 * 110.92578 * 71.54077 * 23 22 21 25 25 C 1.54270 * 104.16191 * 156.29427 * 24 23 22 26 26 C 1.53869 * 106.63967 * 336.44607 * 25 24 23 27 27 C 1.54268 * 106.60115 * 359.97438 * 26 25 24 28 28 H 0.97006 * 119.99516 * 0.02562 * 1 2 3 29 29 H 0.97000 * 119.99690 * 359.97438 * 9 7 2 30 30 H 1.09000 * 109.46606 * 59.99691 * 12 10 9 31 31 H 1.09003 * 109.47261 * 300.00226 * 12 10 9 32 32 H 1.00911 * 111.00036 * 303.95752 * 13 12 10 33 33 H 1.08999 * 109.46865 * 59.99603 * 14 13 12 34 34 H 1.09000 * 109.46544 * 300.00006 * 14 13 12 35 35 H 1.08999 * 109.47591 * 59.99798 * 15 14 13 36 36 H 1.09000 * 109.47025 * 299.99463 * 15 14 13 37 37 H 1.09001 * 109.47169 * 60.00211 * 16 15 14 38 38 H 1.09000 * 109.46864 * 299.99807 * 16 15 14 39 39 H 0.97006 * 119.99896 * 0.02562 * 17 16 15 40 40 H 1.08999 * 109.47508 * 60.00079 * 20 18 17 41 41 H 1.09000 * 109.47087 * 299.99756 * 20 18 17 42 42 H 1.09001 * 109.47169 * 60.00300 * 21 20 18 43 43 H 1.09000 * 109.46864 * 299.99895 * 21 20 18 44 44 H 1.08995 * 109.46922 * 59.99869 * 22 21 20 45 45 H 1.09000 * 109.47141 * 299.99866 * 22 21 20 46 46 H 1.09001 * 110.67554 * 308.23161 * 23 22 21 47 47 H 1.08997 * 110.47708 * 37.64024 * 24 23 22 48 48 H 1.09002 * 110.53308 * 274.97416 * 24 23 22 49 49 H 1.09002 * 110.03399 * 217.13605 * 25 24 23 50 50 H 1.08995 * 110.02943 * 95.75505 * 25 24 23 51 51 H 1.08999 * 110.03405 * 119.26051 * 26 25 24 52 52 H 1.09001 * 110.03705 * 240.64196 * 26 25 24 53 53 H 1.08997 * 110.48788 * 142.28685 * 27 26 25 54 54 H 1.09000 * 110.48806 * 264.79985 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7082 1.3462 0.0006 5 1 1.8895 2.3963 -1.2125 6 1 1.8894 2.3964 1.2124 7 6 2.0087 -1.2034 0.0005 8 1 3.0887 -1.2035 0.0001 9 7 1.3233 -2.3906 0.0005 10 6 1.9970 -3.5579 0.0005 11 8 3.2100 -3.5580 0.0001 12 6 1.2435 -4.8630 0.0011 13 7 2.1979 -5.9796 0.0004 14 6 1.4977 -7.2709 0.0003 15 6 2.5224 -8.4069 0.0002 16 6 1.7930 -9.7518 0.0008 17 7 2.7743 -10.8396 0.0000 18 6 2.3591 -12.1218 0.0009 19 8 1.1730 -12.3751 0.0018 20 6 3.3685 -13.2407 0.0007 21 6 2.6391 -14.5856 0.0024 22 6 3.6639 -15.7217 0.0016 23 6 2.9345 -17.0666 0.0027 24 6 2.2663 -17.3349 -1.3695 25 6 2.1314 -18.8705 -1.4298 26 6 3.1955 -19.4440 -0.4778 27 6 3.9412 -18.2370 0.1281 28 1 -0.4850 0.8401 -0.0004 29 1 0.3533 -2.3906 0.0005 30 1 0.6165 -4.9208 -0.8886 31 1 0.6171 -4.9205 0.8914 32 1 2.8323 -5.9125 -0.7815 33 1 0.8723 -7.3450 -0.8894 34 1 0.8732 -7.3455 0.8906 35 1 3.1474 -8.3326 0.8901 36 1 3.1472 -8.3324 -0.8899 37 1 1.1678 -9.8264 -0.8890 38 1 1.1685 -9.8260 0.8910 39 1 3.7230 -10.6370 -0.0003 40 1 3.9940 -13.1660 0.8902 41 1 3.9928 -13.1667 -0.8898 42 1 2.0133 -14.6608 -0.8869 43 1 2.0151 -14.6594 0.8931 44 1 4.2900 -15.6468 0.8906 45 1 4.2875 -15.6478 -0.8893 46 1 2.1971 -17.1038 0.8046 47 1 2.9010 -16.9756 -2.1794 48 1 1.2844 -16.8637 -1.4153 49 1 2.3114 -19.2215 -2.4459 50 1 1.1363 -19.1710 -1.1020 51 1 2.7168 -20.0222 0.3125 52 1 3.8915 -20.0740 -1.0316 53 1 4.1812 -18.4232 1.1749 54 1 4.8480 -18.0252 -0.4384 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177096384.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:36 Heat of formation + Delta-G solvation = -143.384817 kcal Electronic energy + Delta-G solvation = -27298.600105 eV Core-core repulsion = 23267.138876 eV Total energy + Delta-G solvation = -4031.461229 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.77687 -40.15927 -39.27774 -37.67108 -36.13142 -35.64172 -35.21752 -33.29812 -32.51009 -30.87477 -29.52765 -28.62758 -26.98897 -26.04801 -24.39585 -22.73629 -22.55959 -21.32460 -21.06916 -20.81356 -20.74121 -19.90398 -17.98755 -17.80137 -17.30006 -16.99485 -16.84245 -16.66701 -16.48116 -15.99089 -15.94982 -15.76165 -15.25673 -15.07592 -15.01993 -14.51849 -14.35948 -14.19717 -13.97126 -13.58981 -13.49177 -13.37180 -13.19834 -12.92702 -12.84699 -12.67649 -12.43627 -12.40236 -12.38905 -12.15442 -12.10667 -11.90952 -11.84848 -11.74687 -11.51526 -11.49515 -11.38894 -11.24706 -11.19693 -10.82763 -10.35787 -10.07939 -10.02034 -9.34412 -8.47121 -5.96034 1.36944 1.42430 1.56715 1.68321 2.04421 2.20350 2.30629 2.95125 3.20396 3.52291 3.64927 3.76529 3.81690 3.86868 4.00472 4.11714 4.14368 4.17206 4.21685 4.33302 4.47879 4.49010 4.52734 4.56513 4.58724 4.62241 4.67953 4.70296 4.72399 4.77668 4.80320 4.85697 4.91351 4.95622 5.04720 5.11735 5.15275 5.17270 5.21702 5.26409 5.33323 5.38324 5.40956 5.43919 5.49629 5.55565 5.62435 5.87913 6.09179 6.40513 6.59275 6.59608 7.12180 7.29841 7.55614 8.10572 8.70589 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.058011 B = 0.001042 C = 0.001031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 482.553723 B =26869.400177 C =27151.337407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.012 4.012 3 Si 0.993 3.007 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.334 4.334 8 H 0.079 0.921 9 N -0.573 5.573 10 C 0.437 3.563 11 O -0.623 6.623 12 C 0.064 3.936 13 N -0.683 5.683 14 C 0.062 3.938 15 C -0.114 4.114 16 C 0.126 3.874 17 N -0.722 5.722 18 C 0.503 3.497 19 O -0.592 6.592 20 C -0.133 4.133 21 C -0.101 4.101 22 C -0.104 4.104 23 C -0.095 4.095 24 C -0.122 4.122 25 C -0.129 4.129 26 C -0.127 4.127 27 C -0.119 4.119 28 H 0.278 0.722 29 H 0.396 0.604 30 H 0.067 0.933 31 H 0.103 0.897 32 H 0.346 0.654 33 H 0.040 0.960 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.417 0.583 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.052 0.948 43 H 0.050 0.950 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.065 0.935 47 H 0.068 0.932 48 H 0.054 0.946 49 H 0.064 0.936 50 H 0.058 0.942 51 H 0.061 0.939 52 H 0.066 0.934 53 H 0.067 0.933 54 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.916 -36.262 -1.616 36.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.212 4.212 3 Si 0.817 3.183 4 H -0.197 1.197 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.464 4.464 8 H 0.097 0.903 9 N -0.210 5.210 10 C 0.225 3.775 11 O -0.510 6.510 12 C -0.069 4.069 13 N -0.315 5.315 14 C -0.067 4.067 15 C -0.152 4.152 16 C 0.001 3.999 17 N -0.374 5.374 18 C 0.292 3.708 19 O -0.473 6.473 20 C -0.173 4.173 21 C -0.139 4.139 22 C -0.141 4.141 23 C -0.113 4.113 24 C -0.160 4.160 25 C -0.166 4.166 26 C -0.165 4.165 27 C -0.156 4.156 28 H 0.087 0.913 29 H 0.230 0.770 30 H 0.084 0.916 31 H 0.121 0.879 32 H 0.164 0.836 33 H 0.058 0.942 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.254 0.746 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.084 0.916 47 H 0.087 0.913 48 H 0.073 0.927 49 H 0.083 0.917 50 H 0.076 0.924 51 H 0.080 0.920 52 H 0.085 0.915 53 H 0.086 0.914 54 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.822 -36.267 -0.936 36.743 hybrid contribution -0.509 1.154 -0.869 1.532 sum 5.312 -35.113 -1.805 35.559 Atomic orbital electron populations 1.69683 1.06886 1.29262 1.50373 1.26043 0.96520 1.02430 0.96200 0.84868 0.78085 0.77046 0.78331 1.19686 1.19562 1.19634 1.19716 0.92729 0.84038 1.49909 0.90280 1.41945 1.09355 1.04749 1.64993 1.20882 0.88269 0.86176 0.82209 1.90484 1.15818 1.87976 1.56692 1.21539 0.94073 0.88149 1.03119 1.60060 1.19176 1.00884 1.51396 1.21913 0.95895 0.87424 1.01499 1.21577 0.98272 0.91366 1.04019 1.21153 0.91560 0.85551 1.01646 1.46005 1.11250 1.05291 1.74880 1.21467 0.90102 0.84735 0.74506 1.90694 1.20206 1.84726 1.51632 1.21743 0.97364 0.91575 1.06614 1.21290 0.97893 0.92785 1.01918 1.21551 0.97262 0.92287 1.03014 1.22158 0.97325 0.94642 0.97184 1.22460 1.00346 0.95696 0.97478 1.22158 0.99097 0.95521 0.99841 1.22145 0.97746 0.97897 0.98668 1.22412 0.98095 0.94098 1.00998 0.91289 0.76973 0.91554 0.87863 0.83584 0.94162 0.90427 0.90229 0.90360 0.92321 0.92323 0.74645 0.86538 0.86523 0.92906 0.93148 0.90759 0.90817 0.91616 0.91339 0.92714 0.91711 0.92351 0.92030 0.91488 0.91449 0.91027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.75 13.05 21.66 0.28 -49.46 16 2 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 3 Si 0.99 42.79 29.55 68.60 2.03 44.82 16 4 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 5 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 6 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 7 C -0.33 -19.03 9.68 84.04 0.81 -18.21 16 8 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 9 N -0.57 -29.46 5.29 -306.99 -1.62 -31.09 16 10 C 0.44 20.76 7.82 87.66 0.69 21.45 16 11 O -0.62 -34.41 15.78 -3.07 -0.05 -34.45 16 12 C 0.06 2.16 6.17 85.56 0.53 2.68 16 13 N -0.68 -20.61 6.13 -517.97 -3.17 -23.78 16 14 C 0.06 1.33 5.68 86.30 0.49 1.82 16 15 C -0.11 -1.92 5.59 30.59 0.17 -1.75 16 16 C 0.13 2.16 5.67 86.38 0.49 2.65 16 17 N -0.72 -10.28 5.56 -463.06 -2.57 -12.85 16 18 C 0.50 9.02 7.83 87.66 0.69 9.71 16 19 O -0.59 -16.46 15.98 -3.03 -0.05 -16.50 16 20 C -0.13 -1.29 5.70 29.85 0.17 -1.12 16 21 C -0.10 -1.27 4.40 30.60 0.13 -1.14 16 22 C -0.10 -0.87 4.72 30.59 0.14 -0.72 16 23 C -0.09 -0.96 2.86 -9.48 -0.03 -0.98 16 24 C -0.12 -1.36 5.71 31.70 0.18 -1.18 16 25 C -0.13 -1.30 6.80 31.32 0.21 -1.09 16 26 C -0.13 -1.13 6.80 31.32 0.21 -0.91 16 27 C -0.12 -1.00 6.27 31.67 0.20 -0.80 16 28 H 0.28 13.99 8.31 -92.70 -0.77 13.22 16 29 H 0.40 19.34 7.90 -92.71 -0.73 18.61 16 30 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 32 H 0.35 10.77 8.43 -89.69 -0.76 10.02 16 33 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.42 3.41 8.47 -92.70 -0.79 2.62 16 40 H 0.12 0.62 8.14 -2.39 -0.02 0.61 16 41 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.05 0.85 7.61 -2.39 -0.02 0.83 16 43 H 0.05 0.82 8.10 -2.39 -0.02 0.80 16 44 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 45 H 0.07 0.50 8.00 -2.39 -0.02 0.48 16 46 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.07 0.71 7.95 -2.39 -0.02 0.69 16 48 H 0.05 0.72 8.10 -2.39 -0.02 0.70 16 49 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 50 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 51 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 52 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 53 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 54 H 0.07 0.53 8.05 -2.39 -0.02 0.51 16 Total: -1.00 -73.44 436.36 -0.99 -74.42 By element: Atomic # 1 Polarization: 40.05 SS G_CDS: -1.39 Total: 38.66 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: 5.56 Total: 10.24 kcal Atomic # 7 Polarization: -110.10 SS G_CDS: -7.09 Total: -117.18 kcal Atomic # 8 Polarization: -50.86 SS G_CDS: -0.10 Total: -50.96 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -73.44 -0.99 -74.42 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177096384.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.962 kcal (2) G-P(sol) polarization free energy of solvation -73.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds