Wall clock time and date at job start Sat Apr 11 2020 05:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47146 * 2 1 4 4 C 1.52990 * 109.47193 * 120.00515 * 2 1 3 5 5 C 1.53006 * 109.47528 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.46639 * 300.00006 * 5 4 2 7 7 C 1.53003 * 109.47381 * 59.99868 * 6 5 4 8 8 H 1.08997 * 109.47222 * 59.99332 * 7 6 5 9 9 C 1.50700 * 109.47035 * 179.97438 * 7 6 5 10 10 O 1.21278 * 119.99826 * 120.00070 * 9 7 6 11 11 N 1.34771 * 120.00228 * 299.99786 * 9 7 6 12 12 C 1.46493 * 120.00290 * 180.02562 * 11 9 7 13 13 C 1.53007 * 109.47418 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.47017 * 180.02562 * 13 12 11 15 15 N 1.46901 * 109.46855 * 179.97438 * 14 13 12 16 16 C 1.46898 * 111.00189 * 179.97438 * 15 14 13 17 17 C 1.50696 * 109.47176 * 180.02562 * 16 15 14 18 18 O 1.21288 * 120.00279 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99735 * 179.97438 * 17 16 15 20 20 C 1.37105 * 119.99904 * 179.97438 * 19 17 16 21 21 H 1.07991 * 119.99780 * 0.02562 * 20 19 17 22 22 C 1.38954 * 119.99815 * 179.72596 * 20 19 17 23 23 N 1.31414 * 119.99692 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00158 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.46896 * 89.99806 * 24 22 20 26 26 H 1.48499 * 109.47039 * 209.99966 * 24 22 20 27 27 H 1.48502 * 109.46906 * 329.99872 * 24 22 20 28 28 C 1.52997 * 109.46822 * 299.99865 * 7 6 5 29 29 H 1.09002 * 109.47253 * 299.99585 * 1 2 3 30 30 H 1.09002 * 109.47666 * 59.99888 * 1 2 3 31 31 H 1.09001 * 109.47469 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46604 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47189 * 300.00121 * 3 2 1 34 34 H 1.08999 * 109.46954 * 60.00543 * 3 2 1 35 35 H 1.09001 * 109.47894 * 59.99709 * 4 2 1 36 36 H 1.08999 * 109.47194 * 299.99632 * 4 2 1 37 37 H 1.08998 * 109.47510 * 179.97438 * 5 4 2 38 38 H 1.09005 * 109.46512 * 59.99592 * 5 4 2 39 39 H 1.08997 * 109.47487 * 299.99363 * 6 5 4 40 40 H 1.09000 * 109.46582 * 179.97438 * 6 5 4 41 41 H 0.97000 * 119.99733 * 359.97438 * 11 9 7 42 42 H 1.09006 * 109.47133 * 60.00057 * 12 11 9 43 43 H 1.08997 * 109.47296 * 299.99789 * 12 11 9 44 44 H 1.08998 * 109.47000 * 59.99701 * 13 12 11 45 45 H 1.08997 * 109.46793 * 300.00193 * 13 12 11 46 46 H 1.08998 * 109.47488 * 59.99989 * 14 13 12 47 47 H 1.08993 * 109.47041 * 299.99616 * 14 13 12 48 48 H 1.00907 * 110.99760 * 56.04664 * 15 14 13 49 49 H 1.09000 * 109.46741 * 60.00112 * 16 15 14 50 50 H 1.09002 * 109.46898 * 300.00102 * 16 15 14 51 51 H 0.97005 * 120.00189 * 0.02562 * 19 17 16 52 52 H 0.96995 * 119.99830 * 180.02562 * 23 22 20 53 53 H 1.09002 * 109.47482 * 180.02562 * 28 7 6 54 54 H 1.09001 * 109.47279 * 299.99713 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2491 5 6 3.5700 -0.7219 1.2488 6 6 4.0794 -1.4435 -0.0005 7 6 3.5694 -0.7221 -1.2497 8 1 3.9331 0.3054 -1.2498 9 6 4.0717 -1.4325 -2.4802 10 8 3.2836 -1.8933 -3.2785 11 7 5.3967 -1.5557 -2.6935 12 6 5.8850 -2.2457 -3.8899 13 6 7.4151 -2.2454 -3.8903 14 6 7.9250 -2.9655 -5.1402 15 7 9.3940 -2.9646 -5.1408 16 6 9.9204 -3.6498 -6.3288 17 6 11.4268 -3.6293 -6.2942 18 8 12.0051 -3.0967 -5.3706 19 7 12.1315 -4.2036 -7.2892 20 6 13.5021 -4.1845 -7.2580 21 1 14.0169 -3.7096 -6.4361 22 6 14.2286 -4.7817 -8.2810 23 7 15.5423 -4.7638 -8.2508 24 14 13.3381 -5.6098 -9.6989 25 1 13.1018 -4.6201 -10.7806 26 1 14.1680 -6.7250 -10.2209 27 1 12.0364 -6.1425 -9.2223 28 6 2.0395 -0.7215 -1.2493 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4424 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7490 1.2492 36 1 1.6767 -0.2075 2.1391 37 1 3.9333 -1.2354 2.1390 38 1 3.9337 0.3057 1.2486 39 1 3.7158 -2.4710 -0.0003 40 1 5.1694 -1.4435 -0.0009 41 1 6.0271 -1.1867 -2.0552 42 1 5.5217 -1.7314 -4.7797 43 1 5.5216 -3.2734 -3.8904 44 1 7.7787 -2.7593 -3.0005 45 1 7.7781 -1.2176 -3.8900 46 1 7.5613 -2.4512 -6.0297 47 1 7.5619 -3.9932 -5.1408 48 1 9.7562 -3.3786 -4.2948 49 1 9.5702 -3.1407 -7.2267 50 1 9.5715 -4.6824 -6.3370 51 1 11.6691 -4.6299 -8.0277 52 1 16.0495 -5.1803 -8.9651 53 1 1.6760 -0.2081 -2.1395 54 1 1.6757 -1.7491 -1.2492 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177155981.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:39 Heat of formation + Delta-G solvation = -132.273830 kcal Electronic energy + Delta-G solvation = -28666.765116 eV Core-core repulsion = 24635.785695 eV Total energy + Delta-G solvation = -4030.979420 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.46321 -40.31119 -39.56104 -37.64280 -36.14451 -35.67902 -34.35729 -33.75354 -32.48370 -31.73505 -28.75559 -28.18097 -27.27055 -26.49320 -25.00262 -23.69744 -22.59100 -22.50202 -21.30075 -20.96547 -20.23439 -19.35086 -17.97313 -17.83218 -17.29489 -17.06475 -16.79111 -16.49911 -15.99796 -15.78959 -15.64450 -15.50835 -15.19797 -15.09394 -14.86437 -14.72605 -14.46739 -14.23452 -14.13201 -13.95058 -13.51993 -13.40234 -13.21021 -12.93815 -12.87565 -12.77842 -12.72720 -12.43938 -12.41747 -12.40242 -12.30529 -11.97867 -11.95017 -11.87848 -11.84044 -11.51542 -11.42226 -11.04893 -10.93684 -10.64126 -10.44342 -10.25101 -10.09301 -9.34084 -8.41577 -6.02599 1.30530 1.35876 1.44644 1.63040 1.95047 2.16475 2.23006 2.75471 3.14821 3.41263 3.59871 3.66742 3.73131 3.99470 4.05459 4.12379 4.13340 4.16605 4.19411 4.32531 4.34952 4.43681 4.44070 4.52095 4.55486 4.56981 4.58273 4.70495 4.74151 4.77913 4.82488 4.87544 4.99978 5.07480 5.11168 5.14794 5.17138 5.20315 5.21293 5.21624 5.27737 5.38397 5.44220 5.46356 5.51810 5.52472 5.66489 5.90019 6.03809 6.38803 6.55192 6.59480 6.87599 7.25146 7.39390 7.95663 8.76029 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.035457 B = 0.001345 C = 0.001315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.510024 B =20819.137494 C =21280.645599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.062 4.062 3 C -0.146 4.146 4 C -0.110 4.110 5 C -0.117 4.117 6 C -0.107 4.107 7 C -0.101 4.101 8 H 0.117 0.883 9 C 0.511 3.489 10 O -0.588 6.588 11 N -0.719 5.719 12 C 0.126 3.874 13 C -0.116 4.116 14 C 0.064 3.936 15 N -0.687 5.687 16 C 0.061 3.939 17 C 0.448 3.552 18 O -0.614 6.614 19 N -0.591 5.591 20 C -0.331 4.331 21 H 0.056 0.944 22 C -0.013 4.013 23 N -0.934 5.934 24 Si 0.965 3.035 25 H -0.257 1.257 26 H -0.275 1.275 27 H -0.231 1.231 28 C -0.083 4.083 29 H 0.064 0.936 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.067 0.933 33 H 0.049 0.951 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.055 0.945 40 H 0.082 0.918 41 H 0.415 0.585 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.043 0.957 48 H 0.346 0.654 49 H 0.114 0.886 50 H 0.077 0.923 51 H 0.390 0.610 52 H 0.279 0.721 53 H 0.052 0.948 54 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.831 7.877 16.684 37.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.062 4.062 3 C -0.203 4.203 4 C -0.147 4.147 5 C -0.154 4.154 6 C -0.145 4.145 7 C -0.122 4.122 8 H 0.135 0.865 9 C 0.299 3.701 10 O -0.468 6.468 11 N -0.371 5.371 12 C 0.001 3.999 13 C -0.154 4.154 14 C -0.066 4.066 15 N -0.320 5.320 16 C -0.071 4.071 17 C 0.236 3.764 18 O -0.499 6.499 19 N -0.233 5.233 20 C -0.460 4.460 21 H 0.074 0.926 22 C -0.212 4.212 23 N -0.574 5.574 24 Si 0.784 3.216 25 H -0.182 1.182 26 H -0.200 1.200 27 H -0.155 1.155 28 C -0.121 4.121 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.074 0.926 40 H 0.100 0.900 41 H 0.252 0.748 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.095 0.905 45 H 0.097 0.903 46 H 0.099 0.901 47 H 0.061 0.939 48 H 0.164 0.836 49 H 0.132 0.868 50 H 0.094 0.906 51 H 0.225 0.775 52 H 0.089 0.911 53 H 0.071 0.929 54 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -32.744 8.473 16.361 37.572 hybrid contribution 0.426 -1.360 -0.631 1.559 sum -32.318 7.113 15.729 36.639 Atomic orbital electron populations 1.21860 0.94452 1.01629 1.02004 1.20532 0.95463 0.95864 0.94362 1.21994 1.01751 0.94589 1.01947 1.21623 0.95873 1.00164 0.97072 1.21573 0.95340 1.01542 0.96978 1.21534 1.01271 0.98946 0.92738 1.21415 0.97510 1.01287 0.91955 0.86530 1.21258 0.82098 0.79007 0.87733 1.90683 1.56525 1.50580 1.48995 1.45976 1.07083 1.58394 1.25655 1.21181 0.93786 0.97091 0.87795 1.21594 0.92809 1.02581 0.98445 1.21904 0.85905 0.99567 0.99187 1.60057 1.07803 1.59654 1.04453 1.21633 0.89307 0.99576 0.96610 1.21000 0.90839 0.81579 0.83021 1.90537 1.72993 1.49012 1.37337 1.42042 1.05752 1.52665 1.22804 1.19027 0.81469 1.36439 1.09063 0.92618 1.26103 0.96179 0.97752 1.01173 1.69803 1.07235 1.45195 1.35208 0.85370 0.79552 0.78744 0.77887 1.18183 1.20021 1.15469 1.21333 0.92823 1.00343 0.97650 0.91653 0.93020 0.93138 0.91412 0.93155 0.91857 0.92626 0.90938 0.90784 0.90330 0.92596 0.89964 0.74843 0.92140 0.92162 0.90478 0.90345 0.90111 0.93861 0.83585 0.86836 0.90554 0.77452 0.91132 0.92934 0.93148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 8.47 71.98 0.61 -0.81 16 2 C -0.06 -0.61 0.77 -52.19 -0.04 -0.65 16 3 C -0.15 -1.16 7.78 71.98 0.56 -0.60 16 4 C -0.11 -0.90 4.73 30.59 0.14 -0.76 16 5 C -0.12 -0.78 5.65 30.60 0.17 -0.61 16 6 C -0.11 -0.94 5.10 30.60 0.16 -0.79 16 7 C -0.10 -1.21 2.25 -11.54 -0.03 -1.24 16 8 H 0.12 1.02 6.43 -2.39 -0.02 1.00 16 9 C 0.51 9.41 7.15 87.66 0.63 10.04 16 10 O -0.59 -16.25 15.98 -3.02 -0.05 -16.30 16 11 N -0.72 -10.17 5.45 -463.07 -2.52 -12.69 16 12 C 0.13 2.02 5.67 86.38 0.49 2.51 16 13 C -0.12 -1.79 5.59 30.60 0.17 -1.62 16 14 C 0.06 1.20 5.69 86.30 0.49 1.69 16 15 N -0.69 -19.04 6.13 -517.95 -3.17 -22.21 16 16 C 0.06 1.82 6.17 85.56 0.53 2.34 16 17 C 0.45 20.03 7.82 87.66 0.69 20.71 16 18 O -0.61 -33.81 15.78 -3.05 -0.05 -33.85 16 19 N -0.59 -27.74 5.09 -306.99 -1.56 -29.31 16 20 C -0.33 -19.38 10.16 84.04 0.85 -18.52 16 21 H 0.06 3.88 7.39 -2.92 -0.02 3.86 16 22 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 23 N -0.93 -56.21 13.96 21.66 0.30 -55.91 16 24 Si 0.96 38.61 27.73 68.60 1.90 40.52 16 25 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 26 H -0.28 -10.94 7.11 99.48 0.71 -10.24 16 27 H -0.23 -7.77 6.52 99.48 0.65 -7.12 16 28 C -0.08 -1.20 3.30 30.59 0.10 -1.10 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.05 0.54 8.14 -2.39 -0.02 0.53 16 32 H 0.07 0.44 4.81 -2.39 -0.01 0.43 16 33 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.05 0.54 8.14 -2.39 -0.02 0.53 16 36 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 37 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 38 H 0.08 0.40 6.43 -2.38 -0.02 0.38 16 39 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.08 0.49 7.56 -2.39 -0.02 0.48 16 41 H 0.41 3.60 7.89 -92.71 -0.73 2.87 16 42 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 43 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.35 10.11 8.43 -89.69 -0.76 9.36 16 49 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 50 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 51 H 0.39 15.09 5.76 -92.70 -0.53 14.56 16 52 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 53 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 54 H 0.05 0.90 8.10 -2.39 -0.02 0.89 16 Total: -1.00 -80.50 420.28 -0.34 -80.84 By element: Atomic # 1 Polarization: 39.74 SS G_CDS: -1.18 Total: 38.56 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: 5.99 Total: 10.35 kcal Atomic # 7 Polarization: -113.16 SS G_CDS: -6.96 Total: -120.12 kcal Atomic # 8 Polarization: -50.06 SS G_CDS: -0.10 Total: -50.15 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 1.90 Total: 40.52 kcal Total: -80.50 -0.34 -80.84 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177155981.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.431 kcal (2) G-P(sol) polarization free energy of solvation -80.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds