Wall clock time and date at job start Sat Apr 11 2020 05:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46637 * 2 1 4 4 C 1.53003 * 109.47140 * 240.00371 * 2 1 3 5 5 C 1.52999 * 109.46898 * 299.99804 * 4 2 1 6 6 C 1.52997 * 109.46956 * 300.00089 * 5 4 2 7 7 C 1.52993 * 109.47501 * 60.00216 * 6 5 4 8 8 C 1.52997 * 109.47283 * 119.99933 * 2 1 3 9 9 H 1.08998 * 109.46991 * 179.97438 * 8 2 1 10 10 C 1.50700 * 109.47372 * 300.00070 * 8 2 1 11 11 O 1.21278 * 119.99826 * 0.02562 * 10 8 2 12 12 N 1.34771 * 120.00228 * 180.02562 * 10 8 2 13 13 C 1.46493 * 120.00290 * 180.02562 * 12 10 8 14 14 C 1.53007 * 109.47418 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.47017 * 180.02562 * 14 13 12 16 16 N 1.46901 * 109.46855 * 179.97438 * 15 14 13 17 17 C 1.46898 * 111.00189 * 179.97438 * 16 15 14 18 18 C 1.50696 * 109.47176 * 180.02562 * 17 16 15 19 19 O 1.21288 * 120.00279 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99735 * 179.97438 * 18 17 16 21 21 C 1.37105 * 119.99904 * 179.97438 * 20 18 17 22 22 H 1.07991 * 119.99780 * 0.02562 * 21 20 18 23 23 C 1.38954 * 119.99815 * 179.72596 * 21 20 18 24 24 N 1.31412 * 119.99962 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99686 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47350 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46893 * 120.00104 * 25 23 21 28 28 H 1.48493 * 109.47057 * 240.00163 * 25 23 21 29 29 H 1.09002 * 109.47096 * 299.99366 * 1 2 3 30 30 H 1.09000 * 109.47823 * 59.99840 * 1 2 3 31 31 H 1.09009 * 109.46864 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46761 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.46878 * 300.00095 * 3 2 1 34 34 H 1.09002 * 109.46860 * 60.00490 * 3 2 1 35 35 H 1.08994 * 109.46859 * 179.97438 * 4 2 1 36 36 H 1.09000 * 109.46940 * 59.99803 * 4 2 1 37 37 H 1.08999 * 109.46954 * 180.02562 * 5 4 2 38 38 H 1.08998 * 109.47189 * 59.99869 * 5 4 2 39 39 H 1.09002 * 109.47482 * 299.99883 * 6 5 4 40 40 H 1.09001 * 109.47279 * 180.02562 * 6 5 4 41 41 H 1.09000 * 109.47571 * 180.02562 * 7 6 5 42 42 H 1.08998 * 109.47256 * 59.99847 * 7 6 5 43 43 H 0.97000 * 119.99733 * 359.97438 * 12 10 8 44 44 H 1.09006 * 109.47133 * 60.00057 * 13 12 10 45 45 H 1.08997 * 109.47296 * 299.99789 * 13 12 10 46 46 H 1.08998 * 109.47000 * 59.99701 * 14 13 12 47 47 H 1.08997 * 109.46793 * 300.00193 * 14 13 12 48 48 H 1.08998 * 109.47488 * 59.99989 * 15 14 13 49 49 H 1.08993 * 109.47041 * 299.99616 * 15 14 13 50 50 H 1.00907 * 110.99760 * 56.04664 * 16 15 14 51 51 H 1.09000 * 109.46741 * 60.00112 * 17 16 15 52 52 H 1.09002 * 109.46898 * 300.00102 * 17 16 15 53 53 H 0.97005 * 120.00189 * 0.02562 * 20 18 17 54 54 H 0.97000 * 119.99308 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5300 -2.1637 -1.2493 6 6 2.0400 -2.8849 -0.0001 7 6 1.5301 -2.1638 1.2491 8 6 2.0400 -0.7212 1.2492 9 1 3.1300 -0.7216 1.2489 10 6 1.5377 -0.0109 2.4797 11 8 0.8401 0.9749 2.3685 12 7 1.8638 -0.4710 3.7038 13 6 1.3750 0.2192 4.8999 14 6 1.8852 -0.5020 6.1492 15 6 1.3742 0.2186 7.3984 16 7 1.8635 -0.4742 8.5978 17 6 1.3921 0.1915 9.8195 18 6 1.9134 -0.5454 11.0262 19 8 2.6095 -1.5282 10.8828 20 7 1.6068 -0.1118 12.2650 21 6 2.0806 -0.7825 13.3629 22 1 2.6998 -1.6580 13.2351 23 6 1.7693 -0.3320 14.6400 24 7 1.0202 0.7365 14.7954 25 14 2.4154 -1.2455 16.1358 26 1 3.2290 -2.4064 15.6937 27 1 3.2583 -0.3315 16.9479 28 1 1.2732 -1.7242 16.9550 29 1 -0.3633 0.5137 0.8901 30 1 -0.3635 0.5138 -0.8899 31 1 -0.3633 -1.0278 0.0005 32 1 3.1299 1.4426 -0.0005 33 1 1.6765 1.9564 -0.8900 34 1 1.6765 1.9564 0.8901 35 1 3.1299 -0.7208 -1.2495 36 1 1.6766 -0.2073 -2.1392 37 1 1.8937 -2.6776 -2.1391 38 1 0.4400 -2.1637 -1.2493 39 1 3.1301 -2.8849 -0.0001 40 1 1.6771 -3.9127 -0.0003 41 1 1.8938 -2.6773 2.1391 42 1 0.4401 -2.1638 1.2492 43 1 2.4214 -1.2596 3.7927 44 1 0.2850 0.2183 4.9000 45 1 1.7376 1.2471 4.8999 46 1 2.9752 -0.5015 6.1493 47 1 1.5223 -1.5298 6.1490 48 1 0.2842 0.2177 7.3981 49 1 1.7367 1.2464 7.3988 50 1 2.8701 -0.5439 8.5898 51 1 0.3022 0.1912 9.8359 52 1 1.7555 1.2190 9.8367 53 1 1.0503 0.6745 12.3798 54 1 0.8026 1.0506 15.6870 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177192891.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:48 Heat of formation + Delta-G solvation = -126.510229 kcal Electronic energy + Delta-G solvation = -29079.561951 eV Core-core repulsion = 25048.832459 eV Total energy + Delta-G solvation = -4030.729492 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.78337 -40.16871 -39.16089 -37.58342 -36.14467 -35.68961 -33.95381 -33.30185 -32.83180 -31.54160 -28.68834 -28.20416 -27.50238 -26.37226 -24.78964 -23.90628 -22.59815 -22.02563 -21.33767 -21.03275 -19.91148 -19.39364 -17.99695 -17.79784 -17.24785 -16.91910 -16.66713 -16.40519 -16.03081 -15.83350 -15.77516 -15.44093 -15.22269 -15.13237 -15.06965 -14.70810 -14.36515 -13.99979 -13.93113 -13.61124 -13.49310 -13.33910 -13.21644 -12.88220 -12.79504 -12.68226 -12.59003 -12.42590 -12.40165 -12.35295 -12.20786 -12.10803 -12.01482 -11.83372 -11.74493 -11.52100 -11.51597 -11.03209 -10.91574 -10.37151 -10.24424 -10.02133 -9.99505 -9.34382 -8.47208 -5.96165 1.36899 1.42322 1.56618 1.69077 2.04362 2.20083 2.30450 2.95077 3.20143 3.52167 3.58072 3.72123 3.76380 4.01042 4.10786 4.15685 4.17443 4.23884 4.32644 4.35526 4.41975 4.44695 4.48189 4.53020 4.56590 4.57383 4.59049 4.70764 4.75482 4.79436 4.87690 4.90763 5.00088 5.09922 5.14662 5.16849 5.17572 5.21254 5.23736 5.25435 5.33978 5.40917 5.41589 5.47558 5.49145 5.65336 5.73606 5.88052 6.09271 6.40450 6.59328 6.60960 7.12015 7.33936 7.55511 8.10476 8.70398 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.033856 B = 0.001383 C = 0.001348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.843839 B =20243.946715 C =20759.954855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.040 4.040 3 C -0.152 4.152 4 C -0.105 4.105 5 C -0.123 4.123 6 C -0.114 4.114 7 C -0.111 4.111 8 C -0.091 4.091 9 H 0.110 0.890 10 C 0.512 3.488 11 O -0.565 6.565 12 N -0.721 5.721 13 C 0.128 3.872 14 C -0.115 4.115 15 C 0.063 3.937 16 N -0.683 5.683 17 C 0.064 3.936 18 C 0.437 3.563 19 O -0.623 6.623 20 N -0.573 5.573 21 C -0.335 4.335 22 H 0.080 0.920 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.994 3.006 26 H -0.273 1.273 27 H -0.271 1.271 28 H -0.271 1.271 29 H 0.056 0.944 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.060 0.940 43 H 0.413 0.587 44 H 0.059 0.941 45 H 0.060 0.940 46 H 0.076 0.924 47 H 0.078 0.922 48 H 0.077 0.923 49 H 0.040 0.960 50 H 0.345 0.655 51 H 0.103 0.897 52 H 0.066 0.934 53 H 0.396 0.604 54 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.335 -1.774 -33.070 33.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.041 4.041 3 C -0.209 4.209 4 C -0.143 4.143 5 C -0.161 4.161 6 C -0.152 4.152 7 C -0.149 4.149 8 C -0.112 4.112 9 H 0.128 0.872 10 C 0.300 3.700 11 O -0.445 6.445 12 N -0.374 5.374 13 C 0.004 3.996 14 C -0.153 4.153 15 C -0.066 4.066 16 N -0.315 5.315 17 C -0.068 4.068 18 C 0.225 3.775 19 O -0.510 6.510 20 N -0.211 5.211 21 C -0.465 4.465 22 H 0.098 0.902 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.818 3.182 26 H -0.197 1.197 27 H -0.196 1.196 28 H -0.196 1.196 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.097 0.903 42 H 0.079 0.921 43 H 0.249 0.751 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.095 0.905 47 H 0.097 0.903 48 H 0.096 0.904 49 H 0.058 0.942 50 H 0.164 0.836 51 H 0.121 0.879 52 H 0.084 0.916 53 H 0.230 0.770 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.721 -2.082 -33.054 33.127 hybrid contribution 0.573 0.764 1.199 1.533 sum 1.294 -1.318 -31.854 31.908 Atomic orbital electron populations 1.22128 0.95110 1.01591 1.02009 1.20246 0.95627 0.94630 0.93562 1.22066 1.00379 0.96141 1.02336 1.21597 1.00855 0.95556 0.96272 1.21607 1.00921 0.95217 0.98335 1.21508 1.01382 0.98987 0.93297 1.21588 1.01120 0.92332 0.99858 1.21402 1.02393 0.96146 0.91306 0.87212 1.21121 0.79514 0.84061 0.85325 1.90586 1.39136 1.27954 1.86807 1.46012 1.53704 1.32444 1.05207 1.21136 0.98961 0.96027 0.83499 1.21583 1.01724 1.00377 0.91619 1.21907 1.00908 0.95417 0.88412 1.60069 1.17320 1.53729 1.00431 1.21536 1.01731 0.95585 0.87995 1.20884 0.84591 0.86970 0.85094 1.90483 1.43602 1.30267 1.86610 1.41951 1.46519 1.27982 1.04612 1.19729 1.30610 1.11004 0.85128 0.90243 1.26055 0.96747 0.97190 1.01268 1.69682 1.37463 1.23976 1.25015 0.84853 0.78174 0.78033 0.77162 1.19730 1.19594 1.19627 0.92490 0.93246 0.92238 0.92767 0.92945 0.92266 0.91217 0.91760 0.91089 0.92142 0.90884 0.90966 0.90268 0.92100 0.75089 0.92213 0.92188 0.90503 0.90335 0.90419 0.94162 0.83609 0.87868 0.91568 0.76970 0.91296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 7.48 71.98 0.54 -1.97 16 2 C -0.04 -0.55 0.51 -52.18 -0.03 -0.58 16 3 C -0.15 -2.48 8.18 71.98 0.59 -1.89 16 4 C -0.11 -1.05 4.73 30.59 0.14 -0.90 16 5 C -0.12 -1.03 5.65 30.59 0.17 -0.86 16 6 C -0.11 -0.84 5.92 30.59 0.18 -0.65 16 7 C -0.11 -1.05 4.83 30.59 0.15 -0.91 16 8 C -0.09 -1.11 1.84 -11.54 -0.02 -1.14 16 9 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 10 C 0.51 9.08 6.57 87.66 0.58 9.66 16 11 O -0.57 -14.20 11.35 -3.02 -0.03 -14.24 16 12 N -0.72 -10.40 5.45 -463.07 -2.52 -12.92 16 13 C 0.13 2.15 5.67 86.38 0.49 2.64 16 14 C -0.11 -1.92 5.59 30.60 0.17 -1.75 16 15 C 0.06 1.34 5.69 86.30 0.49 1.83 16 16 N -0.68 -20.62 6.13 -517.95 -3.17 -23.79 16 17 C 0.06 2.17 6.17 85.56 0.53 2.69 16 18 C 0.44 20.77 7.82 87.66 0.69 21.45 16 19 O -0.62 -34.42 15.78 -3.05 -0.05 -34.47 16 20 N -0.57 -29.49 5.29 -306.99 -1.62 -31.11 16 21 C -0.34 -19.09 9.68 84.04 0.81 -18.27 16 22 H 0.08 4.82 7.16 -2.92 -0.02 4.80 16 23 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 24 N -0.92 -49.69 13.05 21.66 0.28 -49.40 16 25 Si 0.99 42.84 29.55 68.60 2.03 44.87 16 26 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 27 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 28 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 29 H 0.06 1.27 5.51 -2.39 -0.01 1.26 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.87 4.81 -2.38 -0.01 0.86 16 32 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.06 1.30 5.51 -2.39 -0.01 1.28 16 35 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.06 0.59 6.43 -2.39 -0.02 0.57 16 39 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.08 0.56 7.56 -2.39 -0.02 0.55 16 42 H 0.06 0.74 6.43 -2.39 -0.02 0.72 16 43 H 0.41 3.88 7.89 -92.71 -0.73 3.15 16 44 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 45 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 49 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 50 H 0.35 10.79 8.43 -89.69 -0.76 10.03 16 51 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 52 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 53 H 0.40 19.35 7.90 -92.70 -0.73 18.61 16 54 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 Total: -1.00 -70.46 414.08 -0.45 -70.91 By element: Atomic # 1 Polarization: 42.33 SS G_CDS: -1.31 Total: 41.03 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: 5.95 Total: 9.13 kcal Atomic # 7 Polarization: -110.19 SS G_CDS: -7.04 Total: -117.23 kcal Atomic # 8 Polarization: -48.62 SS G_CDS: -0.08 Total: -48.70 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -70.46 -0.45 -70.91 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177192891.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.600 kcal (2) G-P(sol) polarization free energy of solvation -70.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds