Wall clock time and date at job start Sat Apr 11 2020 05:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.46652 * 2 1 4 4 C 1.52998 * 109.47384 * 240.00356 * 2 1 3 5 5 C 1.52993 * 109.47592 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.46873 * 59.99643 * 5 4 2 7 7 C 1.52998 * 109.47306 * 300.00136 * 6 5 4 8 8 C 1.52999 * 109.47363 * 119.99826 * 2 1 3 9 9 H 1.08993 * 109.46773 * 60.00745 * 8 2 1 10 10 C 1.50698 * 109.47004 * 300.00059 * 8 2 1 11 11 O 1.21283 * 120.00472 * 0.02562 * 10 8 2 12 12 N 1.34777 * 119.99538 * 179.97438 * 10 8 2 13 13 C 1.46499 * 119.99665 * 179.72653 * 12 10 8 14 14 C 1.53004 * 109.47198 * 180.27868 * 13 12 10 15 15 C 1.52997 * 109.47000 * 179.97438 * 14 13 12 16 16 N 1.46904 * 109.46983 * 179.97438 * 15 14 13 17 17 C 1.46903 * 111.00204 * 180.02562 * 16 15 14 18 18 C 1.50699 * 109.46998 * 179.97438 * 17 16 15 19 19 O 1.21295 * 120.00000 * 0.02562 * 18 17 16 20 20 N 1.34775 * 119.99798 * 179.97438 * 18 17 16 21 21 C 1.37094 * 120.00027 * 180.02562 * 20 18 17 22 22 H 1.07996 * 120.00216 * 0.02562 * 21 20 18 23 23 C 1.38956 * 120.00110 * 180.02562 * 21 20 18 24 24 N 1.31408 * 119.99736 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00089 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.47359 * 59.99965 * 25 23 21 27 27 H 1.48497 * 109.47154 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.47214 * 300.00390 * 25 23 21 29 29 H 1.09003 * 109.47244 * 299.99905 * 1 2 3 30 30 H 1.09001 * 109.47634 * 60.00063 * 1 2 3 31 31 H 1.09001 * 109.46908 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46592 * 180.02562 * 3 2 1 33 33 H 1.09002 * 109.46680 * 299.99615 * 3 2 1 34 34 H 1.08990 * 109.47127 * 60.00247 * 3 2 1 35 35 H 1.09001 * 109.46719 * 299.99652 * 4 2 1 36 36 H 1.09001 * 109.47077 * 59.99240 * 4 2 1 37 37 H 1.08995 * 109.47584 * 179.97438 * 5 4 2 38 38 H 1.09001 * 109.47191 * 299.99836 * 5 4 2 39 39 H 1.08998 * 109.47458 * 60.00758 * 6 5 4 40 40 H 1.09009 * 109.47378 * 180.02562 * 6 5 4 41 41 H 1.09001 * 109.47042 * 299.99980 * 7 6 5 42 42 H 1.09001 * 109.47080 * 180.02562 * 7 6 5 43 43 H 0.97001 * 120.00485 * 0.02562 * 12 10 8 44 44 H 1.09009 * 109.47454 * 300.27637 * 13 12 10 45 45 H 1.08998 * 109.47492 * 60.27932 * 13 12 10 46 46 H 1.08995 * 109.46638 * 300.00121 * 14 13 12 47 47 H 1.09006 * 109.47139 * 60.00254 * 14 13 12 48 48 H 1.08995 * 109.47672 * 299.99669 * 15 14 13 49 49 H 1.09007 * 109.47288 * 60.00489 * 15 14 13 50 50 H 1.00901 * 110.99709 * 56.04986 * 16 15 14 51 51 H 1.08999 * 109.46830 * 300.00221 * 17 16 15 52 52 H 1.09000 * 109.46616 * 60.00377 * 17 16 15 53 53 H 0.97003 * 119.99741 * 0.02562 * 20 18 17 54 54 H 0.97007 * 120.00002 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7206 -1.2496 6 6 4.0805 -1.4415 -0.0004 7 6 3.5705 -0.7203 1.2489 8 6 2.0400 -0.7212 1.2492 9 1 1.6768 -1.7488 1.2492 10 6 1.5377 -0.0108 2.4797 11 8 0.8400 0.9750 2.3685 12 7 1.8630 -0.4715 3.7037 13 6 1.3796 0.2226 4.8999 14 6 1.8938 -0.4958 6.1492 15 6 1.3895 0.2295 7.3983 16 7 1.8827 -0.4605 8.5978 17 6 1.4167 0.2092 9.8195 18 6 1.9408 -0.5257 11.0262 19 8 2.6347 -1.5102 10.8827 20 7 1.6394 -0.0885 12.2649 21 6 2.1166 -0.7567 13.3627 22 1 2.7344 -1.6332 13.2350 23 6 1.8054 -0.3062 14.6399 24 7 1.0532 0.7601 14.7953 25 14 2.4550 -1.2171 16.1357 26 1 3.9398 -1.2191 16.1079 27 1 1.9835 -0.5405 17.3707 28 1 1.9578 -2.6163 16.1178 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1299 1.4426 -0.0005 33 1 1.6765 1.9563 -0.8901 34 1 1.6766 1.9564 0.8899 35 1 1.6767 -1.7488 -1.2492 36 1 1.6766 -0.2073 -2.1392 37 1 3.9333 -1.2348 -2.1393 38 1 3.9330 0.3072 -1.2498 39 1 3.7176 -2.4693 -0.0002 40 1 5.1705 -1.4408 -0.0003 41 1 3.9335 0.3075 1.2487 42 1 3.9346 -1.2336 2.1388 43 1 2.4207 -1.2602 3.7928 44 1 1.7437 1.2500 4.8959 45 1 0.2896 0.2234 4.9040 46 1 1.5298 -1.5231 6.1532 47 1 2.9839 -0.4965 6.1451 48 1 1.7539 1.2568 7.3941 49 1 0.2995 0.2307 7.4027 50 1 2.8891 -0.5320 8.5857 51 1 1.7813 1.2363 9.8324 52 1 0.3269 0.2101 9.8401 53 1 1.0848 0.6991 12.3796 54 1 0.8357 1.0744 15.6869 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177192892.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:51 Heat of formation + Delta-G solvation = -126.347697 kcal Electronic energy + Delta-G solvation = -29080.444579 eV Core-core repulsion = 25049.722135 eV Total energy + Delta-G solvation = -4030.722444 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.78215 -40.16484 -39.16031 -37.58242 -36.14268 -35.68718 -33.95332 -33.30018 -32.83112 -31.54052 -28.68725 -28.20493 -27.50230 -26.36869 -24.78945 -23.90593 -22.59792 -22.02621 -21.33740 -21.03046 -19.90876 -19.39385 -17.98369 -17.80645 -17.25575 -16.93484 -16.61226 -16.40865 -16.03293 -15.88152 -15.75648 -15.44681 -15.27864 -15.09378 -15.01870 -14.69149 -14.40870 -14.00422 -13.93246 -13.56411 -13.47165 -13.38425 -13.20511 -12.86836 -12.79618 -12.66788 -12.60971 -12.42816 -12.42060 -12.35491 -12.20452 -12.11845 -12.01622 -11.82548 -11.75557 -11.52012 -11.50069 -11.03274 -10.91650 -10.36962 -10.24388 -10.02156 -9.99519 -9.34252 -8.46620 -5.95768 1.40309 1.42322 1.53372 1.69089 2.04740 2.20089 2.30660 2.95177 3.20595 3.52276 3.57981 3.72033 3.76341 4.01034 4.10307 4.16162 4.17358 4.24161 4.32107 4.35777 4.41859 4.44742 4.48176 4.52748 4.56420 4.57440 4.59427 4.70635 4.75487 4.79440 4.87645 4.90691 4.99933 5.09758 5.14609 5.17018 5.18103 5.20332 5.23653 5.25520 5.33851 5.40569 5.41516 5.47492 5.49061 5.65308 5.73525 5.88036 6.09234 6.40658 6.59620 6.60977 7.12011 7.33918 7.55672 8.10703 8.70447 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.033847 B = 0.001383 C = 0.001349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.052087 B =20238.930232 C =20757.032775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.040 4.040 3 C -0.151 4.151 4 C -0.105 4.105 5 C -0.123 4.123 6 C -0.114 4.114 7 C -0.111 4.111 8 C -0.092 4.092 9 H 0.110 0.890 10 C 0.512 3.488 11 O -0.565 6.565 12 N -0.721 5.721 13 C 0.128 3.872 14 C -0.115 4.115 15 C 0.063 3.937 16 N -0.683 5.683 17 C 0.064 3.936 18 C 0.437 3.563 19 O -0.623 6.623 20 N -0.573 5.573 21 C -0.337 4.337 22 H 0.080 0.920 23 C -0.012 4.012 24 N -0.920 5.920 25 Si 0.994 3.006 26 H -0.271 1.271 27 H -0.271 1.271 28 H -0.272 1.272 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.048 0.952 34 H 0.056 0.944 35 H 0.069 0.931 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.060 0.940 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.079 0.921 43 H 0.413 0.587 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.078 0.922 47 H 0.077 0.923 48 H 0.040 0.960 49 H 0.077 0.923 50 H 0.345 0.655 51 H 0.067 0.933 52 H 0.103 0.897 53 H 0.396 0.604 54 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.769 -0.765 -33.045 33.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.041 4.041 3 C -0.208 4.208 4 C -0.143 4.143 5 C -0.161 4.161 6 C -0.152 4.152 7 C -0.149 4.149 8 C -0.113 4.113 9 H 0.127 0.873 10 C 0.300 3.700 11 O -0.445 6.445 12 N -0.374 5.374 13 C 0.004 3.996 14 C -0.153 4.153 15 C -0.066 4.066 16 N -0.316 5.316 17 C -0.068 4.068 18 C 0.224 3.776 19 O -0.510 6.510 20 N -0.210 5.210 21 C -0.467 4.467 22 H 0.098 0.902 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.818 3.182 26 H -0.196 1.196 27 H -0.195 1.195 28 H -0.197 1.197 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.098 0.902 43 H 0.249 0.751 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.096 0.904 47 H 0.095 0.905 48 H 0.058 0.942 49 H 0.096 0.904 50 H 0.164 0.836 51 H 0.084 0.916 52 H 0.121 0.879 53 H 0.230 0.770 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.142 -1.069 -33.020 33.106 hybrid contribution 0.502 0.694 1.184 1.462 sum 2.645 -0.375 -31.835 31.947 Atomic orbital electron populations 1.22066 0.95100 1.01441 1.02339 1.20245 0.95045 0.95211 0.93561 1.22126 1.00756 0.95926 1.02007 1.21597 0.95956 1.00467 0.96274 1.21606 0.95151 1.00974 0.98341 1.21512 1.00835 0.99534 0.93304 1.21594 0.91722 1.01687 0.99859 1.21411 0.97873 1.00684 0.91306 0.87256 1.21123 0.79373 0.84199 0.85324 1.90588 1.39193 1.27898 1.86808 1.46015 1.53824 1.32324 1.05206 1.21137 0.99009 0.95979 0.83499 1.21583 1.01748 1.00353 0.91615 1.21908 1.00894 0.95433 0.88408 1.60055 1.17405 1.53684 1.00430 1.21534 1.01729 0.95569 0.88001 1.20882 0.84629 0.86981 0.85092 1.90483 1.43734 1.30163 1.86610 1.41935 1.46577 1.27882 1.04602 1.19659 1.30719 1.11152 0.85146 0.90223 1.26054 0.96706 0.97188 1.01263 1.69669 1.37226 1.24044 1.25136 0.84974 0.78558 0.78097 0.76615 1.19614 1.19504 1.19730 0.92269 0.92934 0.92798 0.92207 0.93258 0.92484 0.91244 0.91762 0.91098 0.92118 0.90911 0.90936 0.92061 0.90247 0.75087 0.92201 0.92201 0.90363 0.90477 0.94153 0.90433 0.83596 0.91560 0.87894 0.76971 0.91281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 8.18 71.98 0.59 -1.92 16 2 C -0.04 -0.55 0.51 -52.18 -0.03 -0.58 16 3 C -0.15 -2.49 7.48 71.99 0.54 -1.95 16 4 C -0.11 -1.05 4.73 30.59 0.14 -0.91 16 5 C -0.12 -1.02 5.65 30.59 0.17 -0.85 16 6 C -0.11 -0.82 5.92 30.59 0.18 -0.64 16 7 C -0.11 -1.03 4.83 30.61 0.15 -0.88 16 8 C -0.09 -1.12 1.85 -11.53 -0.02 -1.14 16 9 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 10 C 0.51 9.09 6.57 87.66 0.58 9.66 16 11 O -0.57 -14.21 11.35 -3.04 -0.03 -14.24 16 12 N -0.72 -10.40 5.45 -463.05 -2.52 -12.93 16 13 C 0.13 2.15 5.67 86.38 0.49 2.64 16 14 C -0.11 -1.92 5.59 30.59 0.17 -1.75 16 15 C 0.06 1.34 5.69 86.30 0.49 1.83 16 16 N -0.68 -20.64 6.12 -517.92 -3.17 -23.81 16 17 C 0.06 2.17 6.17 85.56 0.53 2.70 16 18 C 0.44 20.75 7.82 87.66 0.69 21.44 16 19 O -0.62 -34.41 15.78 -3.07 -0.05 -34.46 16 20 N -0.57 -29.47 5.29 -306.99 -1.62 -31.09 16 21 C -0.34 -19.20 9.68 84.04 0.81 -18.38 16 22 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 23 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 24 N -0.92 -49.66 13.05 21.66 0.28 -49.38 16 25 Si 0.99 42.79 29.55 68.60 2.03 44.82 16 26 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 27 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 28 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 29 H 0.06 1.31 5.51 -2.39 -0.01 1.29 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 0.87 4.81 -2.39 -0.01 0.85 16 33 H 0.05 0.77 8.14 -2.39 -0.02 0.76 16 34 H 0.06 1.26 5.51 -2.39 -0.01 1.25 16 35 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.07 0.47 8.14 -2.39 -0.02 0.46 16 38 H 0.06 0.58 6.43 -2.39 -0.02 0.57 16 39 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.07 0.45 8.14 -2.38 -0.02 0.43 16 41 H 0.06 0.72 6.43 -2.39 -0.02 0.70 16 42 H 0.08 0.54 7.57 -2.39 -0.02 0.52 16 43 H 0.41 3.88 7.89 -92.71 -0.73 3.15 16 44 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 45 H 0.06 1.13 8.14 -2.39 -0.02 1.12 16 46 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 47 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 48 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 49 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 50 H 0.35 10.79 8.43 -89.69 -0.76 10.03 16 51 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 52 H 0.10 3.18 8.14 -2.39 -0.02 3.16 16 53 H 0.40 19.35 7.90 -92.71 -0.73 18.62 16 54 H 0.28 14.06 8.31 -92.70 -0.77 13.29 16 Total: -1.00 -70.32 414.09 -0.45 -70.78 By element: Atomic # 1 Polarization: 42.53 SS G_CDS: -1.31 Total: 41.22 kcal Atomic # 6 Polarization: 3.14 SS G_CDS: 5.95 Total: 9.09 kcal Atomic # 7 Polarization: -110.17 SS G_CDS: -7.04 Total: -117.21 kcal Atomic # 8 Polarization: -48.62 SS G_CDS: -0.08 Total: -48.70 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -70.32 -0.45 -70.78 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177192892.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.573 kcal (2) G-P(sol) polarization free energy of solvation -70.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds