Wall clock time and date at job start Sat Apr 11 2020 05:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46911 * 2 1 4 4 C 1.53002 * 109.47233 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.46977 * 59.99536 * 4 3 2 6 6 C 1.52999 * 109.46623 * 180.02562 * 5 4 3 7 7 C 1.50703 * 109.47126 * 60.00277 * 5 4 3 8 8 O 1.21279 * 119.99926 * 0.02562 * 7 5 4 9 9 N 1.34775 * 119.99773 * 179.97438 * 7 5 4 10 10 C 1.46496 * 119.99642 * 180.02562 * 9 7 5 11 11 C 1.53006 * 109.46995 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.47127 * 180.02562 * 11 10 9 13 13 N 1.46896 * 109.47114 * 179.97438 * 12 11 10 14 14 C 1.46904 * 111.00095 * 179.97438 * 13 12 11 15 15 C 1.50704 * 109.47145 * 179.97438 * 14 13 12 16 16 O 1.21290 * 119.99700 * 0.02562 * 15 14 13 17 17 N 1.34779 * 119.99686 * 180.02562 * 15 14 13 18 18 C 1.37102 * 119.99398 * 180.02562 * 17 15 14 19 19 H 1.07996 * 119.99973 * 359.97438 * 18 17 15 20 20 C 1.38952 * 119.99331 * 179.97438 * 18 17 15 21 21 N 1.31409 * 120.00414 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99692 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47068 * 0.02562 * 22 20 18 24 24 H 1.48499 * 109.47317 * 119.99744 * 22 20 18 25 25 H 1.48501 * 109.47134 * 240.00171 * 22 20 18 26 26 C 1.52997 * 109.47164 * 300.00295 * 5 4 3 27 27 C 1.52996 * 109.46969 * 239.99738 * 2 1 3 28 28 H 1.09000 * 109.47312 * 60.00201 * 1 2 3 29 29 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47067 * 300.00175 * 1 2 3 31 31 H 1.09000 * 109.47312 * 119.99799 * 2 1 3 32 32 H 1.08992 * 109.47399 * 60.00036 * 3 2 1 33 33 H 1.09004 * 109.46724 * 299.99550 * 3 2 1 34 34 H 1.09000 * 109.46986 * 299.99797 * 4 3 2 35 35 H 1.08988 * 109.47229 * 179.97438 * 4 3 2 36 36 H 1.09001 * 109.47362 * 299.99448 * 6 5 4 37 37 H 1.09000 * 109.47486 * 60.00171 * 6 5 4 38 38 H 1.09002 * 109.46716 * 180.02562 * 6 5 4 39 39 H 0.96998 * 120.00166 * 0.02562 * 9 7 5 40 40 H 1.09001 * 109.47464 * 60.00642 * 10 9 7 41 41 H 1.09001 * 109.47459 * 300.00357 * 10 9 7 42 42 H 1.09001 * 109.47002 * 299.99701 * 11 10 9 43 43 H 1.08993 * 109.46955 * 60.00138 * 11 10 9 44 44 H 1.09001 * 109.47289 * 299.99953 * 12 11 10 45 45 H 1.09004 * 109.47261 * 59.99697 * 12 11 10 46 46 H 1.00899 * 111.00115 * 56.04983 * 13 12 11 47 47 H 1.08996 * 109.47212 * 300.00609 * 14 13 12 48 48 H 1.09001 * 109.46635 * 60.00758 * 14 13 12 49 49 H 0.97000 * 120.00516 * 0.02562 * 17 15 14 50 50 H 0.97000 * 120.00154 * 180.02562 * 21 20 18 51 51 H 1.09002 * 109.47045 * 180.02562 * 26 5 4 52 52 H 1.09000 * 109.47140 * 299.99948 * 26 5 4 53 53 H 1.08992 * 109.47534 * 299.99582 * 27 2 1 54 54 H 1.09000 * 109.47054 * 59.99902 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0795 0.7214 -1.2502 6 6 5.6095 0.7210 -1.2505 7 6 3.5766 1.4320 -2.4804 8 8 2.8798 2.4183 -2.3688 9 7 3.9022 0.9719 -3.7047 10 6 3.4138 1.6629 -4.9005 11 6 3.9232 0.9417 -6.1501 12 6 3.4137 1.6637 -7.3990 13 7 3.9032 0.9716 -8.5987 14 6 3.4322 1.6382 -9.8201 15 6 3.9537 0.9019 -11.0272 16 8 4.6490 -0.0815 -10.8840 17 7 3.6475 1.3364 -12.2658 18 6 4.1216 0.6663 -13.3639 19 1 4.7407 -0.2094 -13.2364 20 6 3.8055 1.1139 -14.6408 21 7 3.0526 2.1797 -14.7958 22 14 4.4519 0.2014 -16.1370 23 1 5.2702 -0.9564 -15.6953 24 1 3.3098 -0.2831 -16.9531 25 1 5.2893 1.1177 -16.9521 26 6 3.5695 -0.7210 -1.2501 27 6 2.0400 -0.7213 -1.2492 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9563 0.8899 33 1 1.6766 1.9563 -0.8901 34 1 3.9337 0.9287 0.8891 35 1 3.9332 2.4702 -0.0011 36 1 5.9731 1.7486 -1.2504 37 1 5.9729 0.2069 -0.3607 38 1 5.9725 0.2076 -2.1409 39 1 4.4598 0.1832 -3.7940 40 1 3.7772 2.6905 -4.9003 41 1 2.3238 1.6630 -4.9005 42 1 5.0132 0.9413 -6.1504 43 1 3.5594 -0.0858 -6.1502 44 1 2.3237 1.6646 -7.3990 45 1 3.7778 2.6912 -7.3987 46 1 3.6334 -0.0006 -8.5907 47 1 2.3423 1.6381 -9.8368 48 1 3.7958 2.6656 -9.8366 49 1 3.0918 2.1232 -12.3802 50 1 2.8317 2.4920 -15.6872 51 1 3.9329 -1.2349 -2.1401 52 1 3.9332 -1.2350 -0.3604 53 1 1.6768 -1.7489 -1.2492 54 1 1.6766 -0.2075 -2.1392 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177201936.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:54 Heat of formation + Delta-G solvation = -134.130729 kcal Electronic energy + Delta-G solvation = -29255.239581 eV Core-core repulsion = 25224.179640 eV Total energy + Delta-G solvation = -4031.059941 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.80658 -40.17065 -38.75216 -37.55137 -36.13282 -35.69828 -34.92117 -33.29604 -32.38895 -31.49624 -29.58453 -28.57523 -26.61281 -25.48346 -24.71607 -23.71377 -23.05421 -22.57693 -21.14928 -21.09558 -20.23686 -19.88685 -17.88287 -17.55249 -17.24097 -17.07922 -16.62779 -16.38948 -15.98555 -15.87932 -15.41343 -15.28667 -15.19578 -15.07560 -14.94233 -14.72562 -14.61216 -14.26866 -13.57454 -13.54677 -13.37711 -13.28752 -13.16596 -13.11293 -13.08013 -12.86199 -12.68259 -12.62062 -12.49188 -12.41667 -12.40372 -12.11926 -12.10824 -11.88978 -11.80185 -11.51882 -11.44867 -11.04585 -10.87371 -10.46484 -10.35132 -10.02526 -10.02278 -9.35225 -8.47382 -5.96397 1.36759 1.42152 1.56498 1.70067 2.04014 2.18285 2.30063 2.94129 3.19882 3.51272 3.58938 3.65295 3.79162 3.94818 4.00249 4.11149 4.12650 4.15206 4.24864 4.32817 4.37053 4.47587 4.50822 4.55597 4.57716 4.62279 4.64118 4.69052 4.72559 4.77329 4.80102 4.85422 4.94918 4.99898 5.01033 5.13256 5.14732 5.16914 5.20881 5.25996 5.28695 5.37479 5.40525 5.40669 5.43558 5.48665 5.71246 5.87403 6.08629 6.39772 6.58879 6.59219 7.11709 7.31293 7.55201 8.10105 8.70210 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.026503 B = 0.001465 C = 0.001450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.221777 B =19113.588198 C =19310.589349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 C -0.128 4.128 4 C -0.092 4.092 5 C -0.075 4.075 6 C -0.141 4.141 7 C 0.520 3.480 8 O -0.577 6.577 9 N -0.720 5.720 10 C 0.128 3.872 11 C -0.114 4.114 12 C 0.063 3.937 13 N -0.682 5.682 14 C 0.064 3.936 15 C 0.437 3.563 16 O -0.623 6.623 17 N -0.573 5.573 18 C -0.335 4.335 19 H 0.080 0.920 20 C -0.014 4.014 21 N -0.921 5.921 22 Si 0.995 3.005 23 H -0.273 1.273 24 H -0.271 1.271 25 H -0.271 1.271 26 C -0.103 4.103 27 C -0.118 4.118 28 H 0.037 0.963 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.087 0.913 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.412 0.588 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.040 0.960 45 H 0.077 0.923 46 H 0.345 0.655 47 H 0.066 0.934 48 H 0.103 0.897 49 H 0.396 0.604 50 H 0.278 0.722 51 H 0.079 0.921 52 H 0.095 0.905 53 H 0.076 0.924 54 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.244 -3.589 32.386 32.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.107 4.107 3 C -0.166 4.166 4 C -0.129 4.129 5 C -0.079 4.079 6 C -0.198 4.198 7 C 0.308 3.692 8 O -0.456 6.456 9 N -0.372 5.372 10 C 0.004 3.996 11 C -0.152 4.152 12 C -0.066 4.066 13 N -0.315 5.315 14 C -0.069 4.069 15 C 0.225 3.775 16 O -0.509 6.509 17 N -0.211 5.211 18 C -0.464 4.464 19 H 0.098 0.902 20 C -0.213 4.213 21 N -0.562 5.562 22 Si 0.818 3.182 23 H -0.197 1.197 24 H -0.196 1.196 25 H -0.196 1.196 26 C -0.141 4.141 27 C -0.156 4.156 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.106 0.894 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.106 0.894 38 H 0.090 0.910 39 H 0.249 0.751 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.098 0.902 43 H 0.095 0.905 44 H 0.058 0.942 45 H 0.096 0.904 46 H 0.164 0.836 47 H 0.084 0.916 48 H 0.121 0.879 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.097 0.903 52 H 0.113 0.887 53 H 0.094 0.906 54 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -0.743 -3.108 32.363 32.521 hybrid contribution -0.935 -0.111 -1.284 1.592 sum -1.678 -3.218 31.079 31.290 Atomic orbital electron populations 1.21819 0.95569 1.01829 1.01215 1.21139 0.95344 0.95672 0.98565 1.21802 0.95787 0.96810 1.02164 1.21376 0.95646 0.99739 0.96174 1.20895 0.97841 0.96904 0.92220 1.21885 0.91021 1.02581 1.04307 1.21054 0.78964 0.83790 0.85360 1.90622 1.39502 1.28390 1.87116 1.45970 1.53682 1.32390 1.05160 1.21136 0.98735 0.96165 0.83603 1.21578 1.02319 0.99812 0.91526 1.21903 0.97609 0.98701 0.88421 1.60066 1.64289 1.06735 1.00403 1.21540 0.98545 0.98782 0.88007 1.20876 0.84595 0.86966 0.85085 1.90483 1.43386 1.30454 1.86610 1.41951 1.46506 1.28000 1.04615 1.19728 1.30510 1.11088 0.85109 0.90224 1.26064 0.96734 0.97231 1.01300 1.69678 1.37286 1.24151 1.25037 0.84847 0.78170 0.78024 0.77139 1.19723 1.19584 1.19636 1.21642 0.95129 0.92893 1.04413 1.21620 0.95892 1.00725 0.97315 0.94341 0.91924 0.92423 0.89976 0.92377 0.92113 0.89408 0.93078 0.93056 0.89388 0.90955 0.75135 0.92263 0.92406 0.90246 0.90455 0.94213 0.90420 0.83595 0.91567 0.87882 0.76972 0.91291 0.90277 0.88679 0.90580 0.94381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.19 71.98 0.66 -1.30 16 2 C -0.09 -1.15 2.72 -10.79 -0.03 -1.18 16 3 C -0.13 -2.13 4.91 30.60 0.15 -1.98 16 4 C -0.09 -1.28 4.37 30.60 0.13 -1.15 16 5 C -0.08 -0.94 0.62 -52.93 -0.03 -0.97 16 6 C -0.14 -1.23 8.37 71.98 0.60 -0.62 16 7 C 0.52 9.85 4.97 87.66 0.44 10.29 16 8 O -0.58 -15.77 13.66 -3.03 -0.04 -15.81 16 9 N -0.72 -11.07 5.34 -463.06 -2.47 -13.54 16 10 C 0.13 2.26 5.67 86.38 0.49 2.75 16 11 C -0.11 -1.96 5.59 30.60 0.17 -1.79 16 12 C 0.06 1.37 5.68 86.30 0.49 1.86 16 13 N -0.68 -20.73 6.13 -517.93 -3.17 -23.90 16 14 C 0.06 2.17 6.17 85.56 0.53 2.70 16 15 C 0.44 20.82 7.82 87.66 0.69 21.50 16 16 O -0.62 -34.44 15.78 -3.06 -0.05 -34.48 16 17 N -0.57 -29.55 5.29 -306.98 -1.62 -31.17 16 18 C -0.33 -19.09 9.68 84.04 0.81 -18.27 16 19 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 20 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 21 N -0.92 -49.78 13.05 21.66 0.28 -49.50 16 22 Si 0.99 42.89 29.55 68.60 2.03 44.92 16 23 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 24 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 26 C -0.10 -0.93 4.63 30.58 0.14 -0.78 16 27 C -0.12 -1.47 4.98 30.58 0.15 -1.32 16 28 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 1.43 5.51 -2.39 -0.01 1.41 16 34 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.05 0.88 8.10 -2.39 -0.02 0.86 16 36 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.07 0.48 7.56 -2.39 -0.02 0.46 16 39 H 0.41 4.25 7.31 -92.71 -0.68 3.58 16 40 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 45 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 46 H 0.35 10.84 8.43 -89.69 -0.76 10.09 16 47 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 48 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 49 H 0.40 19.39 7.90 -92.71 -0.73 18.66 16 50 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 51 H 0.08 0.54 7.57 -2.39 -0.02 0.52 16 52 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 53 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 54 H 0.04 0.66 7.22 -2.39 -0.02 0.64 16 Total: -1.00 -72.18 422.61 -0.46 -72.64 By element: Atomic # 1 Polarization: 42.65 SS G_CDS: -1.27 Total: 41.38 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: 5.86 Total: 9.47 kcal Atomic # 7 Polarization: -111.13 SS G_CDS: -6.99 Total: -118.12 kcal Atomic # 8 Polarization: -50.21 SS G_CDS: -0.09 Total: -50.29 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -72.18 -0.46 -72.64 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177201936.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.495 kcal (2) G-P(sol) polarization free energy of solvation -72.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds