Wall clock time and date at job start Sat Apr 11 2020 05:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 119.99678 * 2 1 4 4 H 1.48507 * 109.46983 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47572 * 299.99745 * 3 2 1 6 6 H 1.48497 * 109.47221 * 60.00126 * 3 2 1 7 7 C 1.38809 * 120.00103 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00168 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99903 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99767 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.46759 * 179.97438 * 10 9 7 12 12 C 1.53007 * 109.47067 * 180.02562 * 11 10 9 13 13 N 1.46496 * 109.47224 * 179.97438 * 12 11 10 14 14 C 1.46505 * 119.99619 * 90.00069 * 13 12 11 15 15 C 1.52997 * 109.47212 * 89.99960 * 14 13 12 16 16 C 1.54267 * 110.03373 * 292.90986 * 15 14 13 17 17 C 1.54968 * 104.16137 * 217.13581 * 16 15 14 18 18 C 1.54884 * 102.77441 * 37.88396 * 17 16 15 19 19 C 1.53874 * 110.03593 * 175.68906 * 15 14 13 20 20 C 1.34774 * 120.00119 * 269.99893 * 13 12 11 21 21 O 1.21270 * 120.00172 * 0.02562 * 20 13 12 22 22 C 1.50706 * 119.99638 * 180.02562 * 20 13 12 23 23 C 1.53002 * 109.46771 * 180.02562 * 22 20 13 24 24 C 1.53002 * 109.46815 * 179.97438 * 23 22 20 25 25 C 1.50702 * 109.46709 * 179.97438 * 24 23 22 26 26 N 1.34777 * 119.99849 * 180.02562 * 25 24 23 27 27 O 1.21274 * 120.00384 * 0.02562 * 25 24 23 28 28 H 0.96999 * 120.00350 * 0.02562 * 1 2 3 29 29 H 0.97001 * 120.00082 * 0.02562 * 9 7 2 30 30 H 1.09002 * 109.46636 * 60.00467 * 10 9 7 31 31 H 1.08993 * 109.47788 * 300.00207 * 10 9 7 32 32 H 1.09002 * 109.47165 * 60.00791 * 11 10 9 33 33 H 1.08997 * 109.47215 * 300.00087 * 11 10 9 34 34 H 1.09006 * 109.46834 * 59.99650 * 12 11 10 35 35 H 1.09003 * 109.46788 * 300.00337 * 12 11 10 36 36 H 1.09002 * 109.47068 * 210.00020 * 14 13 12 37 37 H 1.09001 * 109.47372 * 330.00108 * 14 13 12 38 38 H 1.09004 * 110.01939 * 54.29375 * 15 14 13 39 39 H 1.09001 * 110.48609 * 335.77840 * 16 15 14 40 40 H 1.08999 * 110.49311 * 98.42344 * 16 15 14 41 41 H 1.08997 * 110.72048 * 279.57487 * 17 16 15 42 42 H 1.08993 * 110.92252 * 156.29196 * 17 16 15 43 43 H 1.09009 * 110.48779 * 203.40596 * 18 17 16 44 44 H 1.09001 * 110.59973 * 80.82109 * 18 17 16 45 45 H 1.09003 * 110.03243 * 238.56963 * 19 15 14 46 46 H 1.08996 * 110.02723 * 359.95243 * 19 15 14 47 47 H 1.09004 * 109.46731 * 300.00166 * 22 20 13 48 48 H 1.08993 * 109.47109 * 60.00140 * 22 20 13 49 49 H 1.08996 * 109.47121 * 299.99656 * 23 22 20 50 50 H 1.08996 * 109.46958 * 60.00229 * 23 22 20 51 51 H 1.08996 * 109.47058 * 299.99772 * 24 23 22 52 52 H 1.09002 * 109.47076 * 59.99698 * 24 23 22 53 53 H 0.97005 * 120.00223 * 359.97438 * 26 25 24 54 54 H 0.96997 * 120.00222 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0016 10 6 2.0581 -3.6568 -0.0027 11 6 1.0639 -4.8197 -0.0031 12 6 1.8289 -6.1447 -0.0037 13 7 0.8769 -7.2582 -0.0034 14 6 0.4004 -7.8148 -1.2721 15 6 1.3310 -8.9458 -1.7144 16 6 2.7194 -8.3778 -2.0742 17 6 3.1737 -9.2274 -3.2880 18 6 1.8574 -9.4239 -4.0804 19 6 0.7832 -9.6111 -2.9892 20 6 0.4396 -7.7706 1.1638 21 8 0.8337 -7.3097 2.2140 22 6 -0.5393 -8.9165 1.1640 23 6 -0.8707 -9.3039 2.6066 24 6 -1.8650 -10.4668 2.6067 25 6 -2.1909 -10.8488 4.0276 26 7 -3.0515 -11.8563 4.2740 27 8 -1.6788 -10.2497 4.9493 28 1 -0.4850 0.8400 -0.0004 29 1 0.3556 -2.3881 -0.0023 30 1 2.6847 -3.7152 0.8873 31 1 2.6848 -3.7138 -0.8927 32 1 0.4370 -4.7614 -0.8929 33 1 0.4376 -4.7625 0.8871 34 1 2.4557 -6.2028 0.8863 35 1 2.4556 -6.2021 -0.8937 36 1 -0.6090 -8.2048 -1.1415 37 1 0.3924 -7.0330 -2.0317 38 1 1.4248 -9.6846 -0.9184 39 1 2.6411 -7.3268 -2.3524 40 1 3.4104 -8.5022 -1.2405 41 1 3.5735 -10.1866 -2.9593 42 1 3.9083 -8.6891 -3.8868 43 1 1.9201 -10.3114 -4.7102 44 1 1.6383 -8.5434 -4.6843 45 1 0.6119 -10.6730 -2.8121 46 1 -0.1460 -9.1287 -3.2922 47 1 -1.4521 -8.6146 0.6503 48 1 -0.0988 -9.7708 0.6500 49 1 0.0419 -9.6057 3.1205 50 1 -1.3114 -8.4495 3.1201 51 1 -2.7775 -10.1647 2.0929 52 1 -1.4247 -11.3214 2.0929 53 1 -3.4614 -12.3354 3.5368 54 1 -3.2610 -12.1025 5.1886 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177493397.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:57 Heat of formation + Delta-G solvation = -128.282939 kcal Electronic energy + Delta-G solvation = -29838.523243 eV Core-core repulsion = 25807.716881 eV Total energy + Delta-G solvation = -4030.806362 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.26588 -40.41553 -39.08259 -37.46534 -36.22199 -35.28629 -34.57502 -34.06365 -31.96525 -30.45541 -29.62667 -29.31909 -27.03812 -25.59649 -24.90803 -23.34900 -22.45148 -21.47018 -21.18728 -20.66035 -19.91630 -19.17089 -18.39772 -17.72703 -17.67172 -17.29318 -17.04433 -16.60225 -16.28964 -16.20690 -15.92702 -15.60154 -15.40424 -15.16905 -14.80584 -14.71864 -14.38669 -14.28300 -13.99189 -13.61100 -13.45775 -13.11784 -12.95604 -12.83501 -12.80271 -12.72656 -12.45134 -12.38878 -12.14620 -12.05911 -11.90148 -11.85612 -11.81520 -11.77100 -11.66563 -11.61087 -11.37718 -11.17467 -11.05867 -10.98601 -10.71876 -10.60805 -9.59519 -9.05731 -7.98824 -5.29086 1.44558 1.46865 1.56986 1.69938 1.71787 2.02926 2.53695 2.71703 3.34452 3.53786 3.74891 3.78516 3.86584 3.90496 3.96716 4.03779 4.08869 4.11230 4.25542 4.32121 4.45767 4.51666 4.55164 4.61318 4.62547 4.66160 4.69206 4.70677 4.74649 4.78804 4.84508 4.87756 4.92942 4.97720 5.03328 5.13106 5.18207 5.18973 5.27691 5.27944 5.35689 5.41130 5.42836 5.45424 5.52631 5.58903 5.70033 5.94727 6.23392 6.49330 6.54773 7.27541 7.28729 7.43715 8.03264 8.27509 9.25311 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.007449 B = 0.002581 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3757.796481 B =10845.192993 C =13986.005873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.079 4.079 3 Si 0.979 3.021 4 H -0.265 1.265 5 H -0.288 1.288 6 H -0.293 1.293 7 C -0.249 4.249 8 H 0.077 0.923 9 N -0.748 5.748 10 C 0.155 3.845 11 C -0.120 4.120 12 C 0.126 3.874 13 N -0.604 5.604 14 C 0.107 3.893 15 C -0.103 4.103 16 C -0.127 4.127 17 C -0.126 4.126 18 C -0.126 4.126 19 C -0.112 4.112 20 C 0.498 3.502 21 O -0.594 6.594 22 C -0.126 4.126 23 C -0.090 4.090 24 C -0.129 4.129 25 C 0.503 3.497 26 N -0.839 5.839 27 O -0.607 6.607 28 H 0.252 0.748 29 H 0.372 0.628 30 H 0.010 0.990 31 H 0.033 0.967 32 H 0.069 0.931 33 H 0.035 0.965 34 H 0.059 0.941 35 H 0.101 0.899 36 H 0.109 0.891 37 H 0.082 0.918 38 H 0.079 0.921 39 H 0.060 0.940 40 H 0.051 0.949 41 H 0.067 0.933 42 H 0.060 0.940 43 H 0.071 0.929 44 H 0.061 0.939 45 H 0.080 0.920 46 H 0.078 0.922 47 H 0.125 0.875 48 H 0.130 0.870 49 H 0.044 0.956 50 H 0.037 0.963 51 H 0.129 0.871 52 H 0.134 0.866 53 H 0.421 0.579 54 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.236 -34.710 -8.409 36.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.271 4.271 3 Si 0.807 3.193 4 H -0.189 1.189 5 H -0.214 1.214 6 H -0.220 1.220 7 C -0.380 4.380 8 H 0.094 0.906 9 N -0.391 5.391 10 C 0.028 3.972 11 C -0.159 4.159 12 C 0.003 3.997 13 N -0.335 5.335 14 C -0.014 4.014 15 C -0.123 4.123 16 C -0.164 4.164 17 C -0.163 4.163 18 C -0.164 4.164 19 C -0.150 4.150 20 C 0.288 3.712 21 O -0.474 6.474 22 C -0.165 4.165 23 C -0.129 4.129 24 C -0.169 4.169 25 C 0.290 3.710 26 N -0.403 5.403 27 O -0.488 6.488 28 H 0.061 0.939 29 H 0.204 0.796 30 H 0.028 0.972 31 H 0.051 0.949 32 H 0.088 0.912 33 H 0.054 0.946 34 H 0.077 0.923 35 H 0.119 0.881 36 H 0.127 0.873 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.090 0.910 44 H 0.080 0.920 45 H 0.098 0.902 46 H 0.096 0.904 47 H 0.143 0.857 48 H 0.148 0.852 49 H 0.063 0.937 50 H 0.056 0.944 51 H 0.147 0.853 52 H 0.152 0.848 53 H 0.253 0.747 54 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -4.459 -33.920 -7.440 35.011 hybrid contribution -0.026 1.262 0.649 1.419 sum -4.485 -32.658 -6.791 33.656 Atomic orbital electron populations 1.69839 1.06738 1.26171 1.59461 1.25670 0.96534 1.01405 1.03495 0.84993 0.78169 0.79279 0.76826 1.18947 1.21446 1.22040 1.19713 0.91581 0.85341 1.41390 0.90554 1.42605 1.05618 1.01382 1.89484 1.20690 0.94041 0.84812 0.97634 1.21849 0.98510 0.94367 1.01135 1.21294 0.91205 0.84155 1.03081 1.48061 1.45028 1.33479 1.06945 1.22120 0.98835 0.96543 0.83941 1.22206 0.94579 0.96796 0.98673 1.22538 0.96594 0.99459 0.97817 1.22509 0.97750 0.99736 0.96334 1.22369 0.94532 1.01775 0.97690 1.22125 0.98670 1.01270 0.92911 1.21612 0.82128 0.84776 0.82670 1.90733 1.59975 1.63495 1.33231 1.21768 0.99375 0.96619 0.98721 1.20981 0.98942 0.97658 0.95330 1.21690 1.02383 1.00453 0.92346 1.21381 0.77780 0.79128 0.92710 1.43777 1.47026 1.36134 1.13326 1.90785 1.54234 1.54942 1.48839 0.93873 0.79615 0.97244 0.94919 0.91235 0.94607 0.92286 0.88102 0.87308 0.89986 0.90293 0.92109 0.93045 0.91377 0.92168 0.90999 0.92040 0.90154 0.90360 0.85715 0.85160 0.93727 0.94434 0.85300 0.84827 0.74731 0.76696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.07 13.06 21.65 0.28 -61.78 16 2 C -0.08 -4.77 5.50 84.86 0.47 -4.30 16 3 Si 0.98 47.96 29.55 68.60 2.03 49.98 16 4 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 5 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 6 H -0.29 -14.36 7.11 99.48 0.71 -13.66 16 7 C -0.25 -14.76 9.99 84.03 0.84 -13.92 16 8 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 9 N -0.75 -41.29 5.60 -343.45 -1.92 -43.22 16 10 C 0.16 6.78 6.26 86.38 0.54 7.32 16 11 C -0.12 -4.29 5.65 30.60 0.17 -4.12 16 12 C 0.13 3.58 5.09 86.38 0.44 4.02 16 13 N -0.60 -13.54 2.39 -821.79 -1.96 -15.51 16 14 C 0.11 1.42 4.36 86.38 0.38 1.80 16 15 C -0.10 -1.10 3.14 -10.07 -0.03 -1.14 16 16 C -0.13 -1.86 5.23 31.70 0.17 -1.69 16 17 C -0.13 -1.54 6.91 31.91 0.22 -1.32 16 18 C -0.13 -1.21 6.83 31.67 0.22 -1.00 16 19 C -0.11 -0.80 6.46 31.32 0.20 -0.60 16 20 C 0.50 13.04 7.67 87.66 0.67 13.71 16 21 O -0.59 -23.04 15.56 -3.00 -0.05 -23.09 16 22 C -0.13 -1.79 4.25 29.85 0.13 -1.66 16 23 C -0.09 -1.80 3.79 30.60 0.12 -1.68 16 24 C -0.13 -1.20 5.70 29.85 0.17 -1.03 16 25 C 0.50 8.46 8.10 87.66 0.71 9.17 16 26 N -0.84 -6.00 8.87 -173.54 -1.54 -7.54 16 27 O -0.61 -18.58 16.82 -3.01 -0.05 -18.64 16 28 H 0.25 15.46 8.31 -92.71 -0.77 14.69 16 29 H 0.37 21.77 7.67 -92.71 -0.71 21.06 16 30 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.06 1.97 7.42 -2.38 -0.02 1.95 16 35 H 0.10 2.39 5.65 -2.39 -0.01 2.38 16 36 H 0.11 0.82 6.44 -2.39 -0.02 0.80 16 37 H 0.08 1.17 7.95 -2.39 -0.02 1.16 16 38 H 0.08 0.80 7.35 -2.38 -0.02 0.78 16 39 H 0.06 1.02 6.22 -2.39 -0.01 1.01 16 40 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 43 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 44 H 0.06 0.66 8.14 -2.39 -0.02 0.65 16 45 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 46 H 0.08 0.44 7.67 -2.39 -0.02 0.42 16 47 H 0.12 1.04 7.40 -2.38 -0.02 1.03 16 48 H 0.13 0.89 7.30 -2.39 -0.02 0.87 16 49 H 0.04 1.16 8.06 -2.39 -0.02 1.14 16 50 H 0.04 1.05 8.06 -2.39 -0.02 1.03 16 51 H 0.13 0.40 8.14 -2.39 -0.02 0.38 16 52 H 0.13 0.25 8.14 -2.39 -0.02 0.23 16 53 H 0.42 -0.50 8.83 -92.70 -0.82 -1.32 16 54 H 0.40 2.89 8.93 -92.71 -0.83 2.07 16 Total: -1.00 -91.72 426.90 0.74 -90.99 By element: Atomic # 1 Polarization: 26.68 SS G_CDS: -1.45 Total: 25.23 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 5.41 Total: 3.58 kcal Atomic # 7 Polarization: -122.91 SS G_CDS: -5.14 Total: -128.05 kcal Atomic # 8 Polarization: -41.63 SS G_CDS: -0.10 Total: -41.72 kcal Atomic # 14 Polarization: 47.96 SS G_CDS: 2.03 Total: 49.98 kcal Total: -91.72 0.74 -90.99 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177493397.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.297 kcal (2) G-P(sol) polarization free energy of solvation -91.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds