Wall clock time and date at job start Sat Apr 11 2020 05:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86800 * 119.99655 * 2 1 4 4 H 1.48502 * 109.46616 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47374 * 299.99754 * 3 2 1 6 6 H 1.48500 * 109.46985 * 60.00075 * 3 2 1 7 7 C 1.38810 * 119.99789 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99735 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00394 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00180 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47460 * 179.97438 * 10 9 7 12 12 C 1.52991 * 109.47492 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47492 * 179.97438 * 12 11 10 14 14 C 1.53002 * 109.47195 * 179.97438 * 13 12 11 15 15 C 1.53004 * 109.46695 * 179.97438 * 14 13 12 16 16 N 1.46502 * 109.46763 * 179.97438 * 15 14 13 17 17 C 1.34771 * 120.00113 * 179.97438 * 16 15 14 18 18 O 1.21285 * 119.99973 * 0.02562 * 17 16 15 19 19 C 1.50694 * 120.00352 * 180.02562 * 17 16 15 20 20 N 1.46501 * 109.47629 * 179.97438 * 19 17 16 21 21 C 1.34775 * 120.00606 * 180.02562 * 20 19 17 22 22 O 1.21280 * 119.99487 * 359.97438 * 21 20 19 23 23 C 1.50696 * 120.00203 * 180.02562 * 21 20 19 24 24 C 1.54894 * 110.48422 * 63.24037 * 23 21 20 25 25 C 1.55238 * 102.58338 * 156.67616 * 24 23 21 26 26 C 1.54266 * 104.23333 * 322.08174 * 25 24 23 27 27 C 1.53869 * 106.59800 * 23.61579 * 26 25 24 28 28 H 0.96998 * 120.00377 * 0.02562 * 1 2 3 29 29 H 0.96997 * 119.99639 * 0.02562 * 9 7 2 30 30 H 1.08997 * 109.47217 * 59.99616 * 10 9 7 31 31 H 1.09006 * 109.46910 * 300.00218 * 10 9 7 32 32 H 1.09000 * 109.46616 * 59.99182 * 11 10 9 33 33 H 1.09006 * 109.46732 * 300.00038 * 11 10 9 34 34 H 1.09005 * 109.47409 * 59.99687 * 12 11 10 35 35 H 1.09006 * 109.46980 * 300.00306 * 12 11 10 36 36 H 1.08992 * 109.46766 * 59.99556 * 13 12 11 37 37 H 1.08996 * 109.46716 * 300.00134 * 13 12 11 38 38 H 1.09000 * 109.46930 * 60.00295 * 14 13 12 39 39 H 1.08996 * 109.46768 * 299.99966 * 14 13 12 40 40 H 1.08995 * 109.46667 * 60.00332 * 15 14 13 41 41 H 1.08996 * 109.47050 * 299.99591 * 15 14 13 42 42 H 0.97001 * 119.99884 * 0.02562 * 16 15 14 43 43 H 1.09005 * 109.47247 * 59.99905 * 19 17 16 44 44 H 1.08996 * 109.47401 * 300.00032 * 19 17 16 45 45 H 0.97005 * 119.99133 * 0.02562 * 20 19 17 46 46 H 1.09002 * 110.43350 * 300.69816 * 23 21 20 47 47 H 1.08996 * 110.75388 * 275.05970 * 24 23 21 48 48 H 1.08993 * 110.76071 * 38.44196 * 24 23 21 49 49 H 1.09005 * 110.46917 * 203.39204 * 25 24 23 50 50 H 1.09007 * 110.58541 * 80.83124 * 25 24 23 51 51 H 1.08999 * 110.03060 * 264.32313 * 26 25 24 52 52 H 1.09006 * 110.06829 * 142.91691 * 26 25 24 53 53 H 1.09001 * 110.02983 * 240.71432 * 27 26 25 54 54 H 1.08995 * 110.03881 * 119.28625 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8913 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 6 1.0639 -4.8198 0.0001 12 6 1.8289 -6.1447 -0.0005 13 6 0.8347 -7.3077 0.0008 14 6 1.5998 -8.6327 -0.0005 15 6 0.6055 -9.7956 0.0014 16 7 1.3380 -11.0643 -0.0005 17 6 0.6642 -12.2315 0.0013 18 8 -0.5486 -12.2316 0.0039 19 6 1.4177 -13.5366 0.0000 20 7 0.4658 -14.6502 0.0029 21 6 0.9150 -15.9209 0.0029 22 8 2.1074 -16.1424 0.0000 23 6 -0.0643 -17.0663 0.0054 24 6 -0.9154 -17.0545 -1.2887 25 6 -1.3741 -18.5330 -1.4052 26 6 -0.1502 -19.3478 -0.9385 27 6 0.6826 -18.4153 -0.0416 28 1 -0.4850 0.8400 -0.0004 29 1 0.3556 -2.3880 -0.0005 30 1 2.6848 -3.7145 0.8894 31 1 2.6848 -3.7145 -0.8906 32 1 0.4369 -4.7621 -0.8896 33 1 0.4376 -4.7618 0.8904 34 1 2.4563 -6.2025 0.8890 35 1 2.4549 -6.2023 -0.8910 36 1 0.2071 -7.2500 -0.8885 37 1 0.2091 -7.2498 0.8914 38 1 2.2277 -8.6905 0.8886 39 1 2.2251 -8.6902 -0.8914 40 1 -0.0227 -9.7379 -0.8874 41 1 -0.0195 -9.7378 0.8925 42 1 2.3080 -11.0643 -0.0022 43 1 2.0463 -13.5941 0.8886 44 1 2.0424 -13.5946 -0.8913 45 1 -0.4879 -14.4729 0.0049 46 1 -0.7063 -17.0161 0.8848 47 1 -1.7720 -16.3891 -1.1816 48 1 -0.3083 -16.7695 -2.1478 49 1 -1.6219 -18.7749 -2.4388 50 1 -2.2285 -18.7216 -0.7550 51 1 0.4394 -19.6623 -1.7997 52 1 -0.4755 -20.2195 -0.3706 53 1 1.6764 -18.2771 -0.4675 54 1 0.7609 -18.8339 0.9617 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178556357.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:33 Heat of formation + Delta-G solvation = -131.480416 kcal Electronic energy + Delta-G solvation = -27354.740966 eV Core-core repulsion = 23323.795951 eV Total energy + Delta-G solvation = -4030.945015 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.45354 -40.54911 -38.12022 -37.90348 -36.82420 -35.58759 -35.32800 -33.55168 -31.75852 -30.80290 -29.57843 -28.99525 -27.59821 -25.63865 -23.75221 -22.94738 -22.24600 -22.02851 -21.45169 -21.37583 -20.68714 -19.13546 -18.88581 -17.67269 -17.42613 -17.23745 -16.81046 -16.70143 -16.50301 -16.37602 -15.92207 -15.52304 -15.38732 -15.31571 -15.14813 -14.55299 -14.31861 -14.26746 -14.10848 -13.90631 -13.57369 -13.43349 -13.04625 -12.95636 -12.90274 -12.66222 -12.39140 -12.22236 -12.12569 -12.07141 -12.01766 -11.99373 -11.81305 -11.79779 -11.71276 -11.50636 -11.34041 -11.30766 -11.08860 -10.95001 -10.89926 -10.32691 -10.13497 -9.02073 -7.97136 -5.26687 1.42030 1.46675 1.47961 1.55034 1.58276 1.73687 2.40471 2.55254 3.36720 3.48073 3.55823 3.63812 3.72747 3.81655 4.02153 4.02366 4.19091 4.23599 4.29236 4.29853 4.33644 4.36171 4.46984 4.52682 4.58405 4.60102 4.61524 4.64647 4.78075 4.78303 4.84729 4.94733 4.97955 4.98369 5.06854 5.09766 5.15331 5.17728 5.23570 5.28351 5.29298 5.32201 5.38860 5.40218 5.47754 5.47801 5.53954 5.57008 6.25975 6.39079 6.41914 7.06638 7.12130 7.31329 8.08344 8.31088 9.27047 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.052230 B = 0.001026 C = 0.001012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 535.965600 B =27286.665513 C =27649.663278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.972 5.972 2 C -0.077 4.077 3 Si 0.976 3.024 4 H -0.265 1.265 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.249 4.249 8 H 0.076 0.924 9 N -0.752 5.752 10 C 0.148 3.852 11 C -0.117 4.117 12 C -0.104 4.104 13 C -0.113 4.113 14 C -0.119 4.119 15 C 0.121 3.879 16 N -0.712 5.712 17 C 0.510 3.490 18 O -0.575 6.575 19 C 0.101 3.899 20 N -0.715 5.715 21 C 0.522 3.478 22 O -0.578 6.578 23 C -0.111 4.111 24 C -0.113 4.113 25 C -0.121 4.121 26 C -0.124 4.124 27 C -0.113 4.113 28 H 0.252 0.748 29 H 0.373 0.627 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.419 0.581 43 H 0.111 0.889 44 H 0.110 0.890 45 H 0.416 0.584 46 H 0.120 0.880 47 H 0.087 0.913 48 H 0.061 0.939 49 H 0.074 0.926 50 H 0.080 0.920 51 H 0.062 0.938 52 H 0.075 0.925 53 H 0.060 0.940 54 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.544 -41.904 -0.870 41.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.623 5.623 2 C -0.269 4.269 3 Si 0.804 3.196 4 H -0.189 1.189 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.381 4.381 8 H 0.094 0.906 9 N -0.394 5.394 10 C 0.022 3.978 11 C -0.155 4.155 12 C -0.142 4.142 13 C -0.152 4.152 14 C -0.157 4.157 15 C -0.003 4.003 16 N -0.364 5.364 17 C 0.296 3.704 18 O -0.455 6.455 19 C -0.026 4.026 20 N -0.369 5.369 21 C 0.310 3.690 22 O -0.458 6.458 23 C -0.132 4.132 24 C -0.151 4.151 25 C -0.158 4.158 26 C -0.162 4.162 27 C -0.151 4.151 28 H 0.061 0.939 29 H 0.204 0.796 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.257 0.743 43 H 0.128 0.872 44 H 0.128 0.872 45 H 0.254 0.746 46 H 0.138 0.862 47 H 0.106 0.894 48 H 0.080 0.920 49 H 0.092 0.908 50 H 0.098 0.902 51 H 0.080 0.920 52 H 0.094 0.906 53 H 0.078 0.922 54 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.720 -41.934 -0.868 41.949 hybrid contribution -0.034 1.511 0.045 1.512 sum 0.686 -40.423 -0.823 40.437 Atomic orbital electron populations 1.69831 1.06742 1.26133 1.59555 1.25620 0.96441 1.01276 1.03533 0.85038 0.78242 0.79478 0.76796 1.18908 1.21834 1.21846 1.19723 0.91569 0.85513 1.41306 0.90640 1.42681 1.05710 1.01582 1.89458 1.20881 0.94443 0.85080 0.97431 1.21646 0.98086 0.94401 1.01399 1.21423 0.97974 0.92126 1.02708 1.21448 0.98053 0.93184 1.02476 1.21704 0.97811 0.92095 1.04079 1.21379 0.95060 0.81999 1.01855 1.45836 1.11537 1.05028 1.73979 1.20724 0.87803 0.86380 0.75490 1.90708 1.15392 1.87867 1.51502 1.21124 0.92247 0.83283 1.05991 1.45769 1.11437 1.04641 1.75097 1.21031 0.89570 0.84144 0.74290 1.90683 1.18540 1.85168 1.51379 1.22242 0.96465 0.92340 1.02182 1.22575 0.98963 0.98605 0.94967 1.22420 0.97921 0.93283 1.02207 1.22151 0.96475 0.98348 0.99200 1.22064 0.99129 0.92942 1.00973 0.93912 0.79576 0.96326 0.96315 0.92721 0.92717 0.91290 0.91280 0.91891 0.91886 0.89974 0.89965 0.92161 0.92154 0.74324 0.87167 0.87229 0.74570 0.86166 0.89439 0.91970 0.90777 0.90151 0.91962 0.90608 0.92161 0.91018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.59 13.06 21.65 0.28 -60.31 16 2 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 3 Si 0.98 46.53 29.55 68.60 2.03 48.56 16 4 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 6 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 7 C -0.25 -14.33 9.99 84.03 0.84 -13.49 16 8 H 0.08 4.16 7.83 -2.91 -0.02 4.13 16 9 N -0.75 -39.68 5.60 -343.45 -1.92 -41.61 16 10 C 0.15 5.98 6.26 86.38 0.54 6.52 16 11 C -0.12 -3.66 5.33 30.59 0.16 -3.49 16 12 C -0.10 -2.24 5.21 30.59 0.16 -2.08 16 13 C -0.11 -1.92 5.21 30.60 0.16 -1.76 16 14 C -0.12 -1.36 5.33 30.60 0.16 -1.19 16 15 C 0.12 1.61 5.67 86.38 0.49 2.10 16 16 N -0.71 -7.36 5.56 -463.07 -2.57 -9.93 16 17 C 0.51 7.23 7.90 87.66 0.69 7.93 16 18 O -0.57 -12.49 15.67 -3.05 -0.05 -12.53 16 19 C 0.10 1.11 6.15 85.63 0.53 1.64 16 20 N -0.71 -9.19 5.49 -466.80 -2.56 -11.75 16 21 C 0.52 8.01 7.14 87.66 0.63 8.63 16 22 O -0.58 -13.02 15.44 -3.03 -0.05 -13.07 16 23 C -0.11 -1.12 3.24 -10.46 -0.03 -1.16 16 24 C -0.11 -0.89 6.32 32.01 0.20 -0.69 16 25 C -0.12 -0.75 6.84 31.79 0.22 -0.53 16 26 C -0.12 -0.97 6.80 31.32 0.21 -0.76 16 27 C -0.11 -1.27 6.17 31.32 0.19 -1.08 16 28 H 0.25 15.11 8.31 -92.71 -0.77 14.33 16 29 H 0.37 20.84 7.67 -92.71 -0.71 20.13 16 30 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 34 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 35 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 36 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.06 1.11 8.14 -2.39 -0.02 1.10 16 38 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 40 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.42 1.84 8.47 -92.71 -0.79 1.05 16 43 H 0.11 1.02 8.14 -2.38 -0.02 1.00 16 44 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.42 5.01 7.44 -92.70 -0.69 4.32 16 46 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 48 H 0.06 0.63 8.05 -2.39 -0.02 0.61 16 49 H 0.07 0.40 8.14 -2.38 -0.02 0.39 16 50 H 0.08 0.35 8.14 -2.38 -0.02 0.33 16 51 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 52 H 0.08 0.45 8.14 -2.38 -0.02 0.43 16 53 H 0.06 0.98 6.88 -2.39 -0.02 0.96 16 54 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -76.38 436.39 -0.53 -76.91 By element: Atomic # 1 Polarization: 28.47 SS G_CDS: -1.30 Total: 27.17 kcal Atomic # 6 Polarization: -9.05 SS G_CDS: 5.62 Total: -3.43 kcal Atomic # 7 Polarization: -116.82 SS G_CDS: -6.78 Total: -123.60 kcal Atomic # 8 Polarization: -25.51 SS G_CDS: -0.09 Total: -25.60 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.56 kcal Total: -76.38 -0.53 -76.91 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178556357.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.572 kcal (2) G-P(sol) polarization free energy of solvation -76.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds