Wall clock time and date at job start Sat Apr 11 2020 05:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50699 * 112.85110 * 2 1 4 4 O 1.21283 * 120.00164 * 228.79864 * 3 2 1 5 5 N 1.34777 * 120.00306 * 48.79952 * 3 2 1 6 6 C 1.46498 * 120.00546 * 180.02562 * 5 3 2 7 7 C 1.52992 * 109.47258 * 179.97438 * 6 5 3 8 8 C 1.53008 * 109.47073 * 179.97438 * 7 6 5 9 9 C 1.52992 * 109.47073 * 180.02562 * 8 7 6 10 10 C 1.53002 * 109.47271 * 180.02562 * 9 8 7 11 11 C 1.52995 * 109.47783 * 180.02562 * 10 9 8 12 12 N 1.46892 * 109.47739 * 179.97438 * 11 10 9 13 13 C 1.46900 * 111.00600 * 180.02562 * 12 11 10 14 14 C 1.50696 * 109.47174 * 180.02562 * 13 12 11 15 15 O 1.21286 * 120.00371 * 359.97438 * 14 13 12 16 16 N 1.34783 * 119.99554 * 180.02562 * 14 13 12 17 17 C 1.37100 * 119.99929 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99485 * 359.97438 * 17 16 14 19 19 C 1.38949 * 119.99936 * 179.97438 * 17 16 14 20 20 N 1.31406 * 120.00252 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99823 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47468 * 89.99711 * 21 19 17 23 23 H 1.48503 * 109.47139 * 209.99824 * 21 19 17 24 24 H 1.48510 * 109.47126 * 329.99914 * 21 19 17 25 25 C 1.53782 * 113.61734 * 228.79873 * 2 1 3 26 26 C 1.53781 * 87.08260 * 220.02231 * 25 2 1 27 27 C 1.53786 * 87.17350 * 25.39213 * 26 25 2 28 28 H 1.08996 * 109.47659 * 191.19490 * 1 2 3 29 29 H 1.09003 * 109.47607 * 311.20386 * 1 2 3 30 30 H 1.09003 * 109.47085 * 71.19884 * 1 2 3 31 31 H 0.97001 * 119.99598 * 0.02562 * 5 3 2 32 32 H 1.08998 * 109.46877 * 300.00500 * 6 5 3 33 33 H 1.09002 * 109.47037 * 59.99656 * 6 5 3 34 34 H 1.08998 * 109.47708 * 300.00143 * 7 6 5 35 35 H 1.09002 * 109.47071 * 60.00462 * 7 6 5 36 36 H 1.08998 * 109.47124 * 300.00688 * 8 7 6 37 37 H 1.09002 * 109.46641 * 60.00387 * 8 7 6 38 38 H 1.08998 * 109.47708 * 300.00331 * 9 8 7 39 39 H 1.09002 * 109.47071 * 60.00650 * 9 8 7 40 40 H 1.09007 * 109.46971 * 300.00710 * 10 9 8 41 41 H 1.09002 * 109.47077 * 59.99775 * 10 9 8 42 42 H 1.09004 * 109.47087 * 300.00815 * 11 10 9 43 43 H 1.09002 * 109.47056 * 59.99691 * 11 10 9 44 44 H 1.00903 * 110.99663 * 56.04361 * 12 11 10 45 45 H 1.09005 * 109.46639 * 300.00434 * 13 12 11 46 46 H 1.09005 * 109.46821 * 59.99710 * 13 12 11 47 47 H 0.96996 * 119.99971 * 359.97438 * 16 14 13 48 48 H 0.96993 * 120.00207 * 180.02562 * 20 19 17 49 49 H 1.09001 * 113.61250 * 105.47049 * 25 2 1 50 50 H 1.08997 * 113.61225 * 334.56890 * 25 2 1 51 51 H 1.09002 * 113.61445 * 139.98212 * 26 25 2 52 52 H 1.09002 * 113.61408 * 270.79943 * 26 25 2 53 53 H 1.08993 * 113.61491 * 89.15923 * 27 26 25 54 54 H 1.09000 * 113.61138 * 220.06261 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1152 1.3887 0.0000 4 8 2.9882 1.6789 -0.7903 5 7 1.6684 2.3083 0.8782 6 6 2.2369 3.6585 0.8779 7 6 1.5590 4.4976 1.9628 8 6 2.1532 5.9075 1.9629 9 6 1.4758 6.7464 3.0482 10 6 2.0695 8.1565 3.0479 11 6 1.3926 8.9953 4.1337 12 7 1.9630 10.3490 4.1338 13 6 1.3360 11.1846 5.1665 14 6 1.9450 12.5626 5.1358 15 8 2.8160 12.8230 4.3330 16 7 1.5224 13.5055 6.0012 17 6 2.0761 14.7595 5.9730 18 1 2.8511 14.9915 5.2575 19 6 1.6400 15.7317 6.8648 20 7 0.6967 15.4495 7.7350 21 14 2.3949 17.4399 6.8268 22 1 1.6231 18.3016 5.8957 23 1 2.3587 18.0276 8.1901 24 1 3.8032 17.3486 6.3644 25 6 2.1460 -0.9281 -1.0601 26 6 3.1923 -1.3136 -0.0011 27 6 2.1479 -0.9296 1.0604 28 1 -0.3634 -1.0080 0.1995 29 1 -0.3634 0.6770 0.7732 30 1 -0.3633 0.3312 -0.9729 31 1 0.9704 2.0761 1.5105 32 1 3.3070 3.6022 1.0771 33 1 2.0724 4.1217 -0.0950 34 1 0.4890 4.5539 1.7632 35 1 1.7232 4.0345 2.9358 36 1 3.2232 5.8509 2.1627 37 1 1.9894 6.3708 0.9899 38 1 0.4057 6.8031 2.8488 39 1 1.6400 6.2830 4.0211 40 1 3.1397 8.1002 3.2471 41 1 1.9050 8.6198 2.0750 42 1 0.3223 9.0516 3.9349 43 1 1.5574 8.5319 5.1064 44 1 1.8806 10.7761 3.2233 45 1 0.2653 11.2564 4.9750 46 1 1.5005 10.7359 6.1462 47 1 0.8261 13.2972 6.6435 48 1 0.3921 16.1282 8.3573 49 1 2.5650 -0.3971 -1.9149 50 1 1.4945 -1.7523 -1.3505 51 1 3.4443 -2.3741 -0.0021 52 1 4.0717 -0.6696 -0.0014 53 1 1.4969 -1.7542 1.3508 54 1 2.5685 -0.3998 1.9151 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179256061.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:52 Heat of formation + Delta-G solvation = -111.166776 kcal Electronic energy + Delta-G solvation = -27498.247501 eV Core-core repulsion = 23468.183351 eV Total energy + Delta-G solvation = -4030.064150 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.69468 -40.16994 -38.73767 -37.88799 -36.81768 -35.95261 -35.12190 -33.29588 -32.51166 -30.91586 -29.18478 -27.47692 -26.59232 -25.90425 -24.82406 -23.62285 -22.39591 -22.20714 -21.86379 -21.02492 -20.00782 -19.89852 -17.82681 -17.51382 -17.28184 -17.13666 -16.92441 -16.53316 -16.25115 -16.01871 -15.82151 -15.56318 -15.26449 -15.13803 -14.90936 -14.50944 -14.23531 -14.20628 -13.82199 -13.73768 -13.52922 -13.50363 -13.43016 -13.12201 -13.10829 -12.87897 -12.53846 -12.43044 -12.38520 -12.26305 -12.12645 -11.92083 -11.87746 -11.73565 -11.65239 -11.51668 -11.32768 -11.25504 -11.21172 -10.73291 -10.35943 -10.14372 -10.02641 -9.31317 -8.47522 -5.96547 1.37757 1.41711 1.54606 1.54642 2.03848 2.13561 2.29088 2.93950 3.19680 3.44367 3.52167 3.58876 3.70575 3.81478 3.89847 3.98931 4.04584 4.15474 4.20108 4.24316 4.32090 4.46559 4.50999 4.51467 4.54329 4.61307 4.71332 4.72865 4.77540 4.79496 4.83223 4.85717 4.86493 4.96792 5.01225 5.02832 5.08242 5.11289 5.19723 5.20449 5.29700 5.30881 5.40108 5.43061 5.47463 5.49314 5.54273 5.90464 6.12904 6.41847 6.51609 6.59377 7.11609 7.21157 7.54909 8.10461 8.69964 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.048989 B = 0.001046 C = 0.001036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 571.419194 B =26763.017257 C =27023.556226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.114 4.114 3 C 0.528 3.472 4 O -0.587 6.587 5 N -0.715 5.715 6 C 0.118 3.882 7 C -0.117 4.117 8 C -0.116 4.116 9 C -0.107 4.107 10 C -0.114 4.114 11 C 0.060 3.940 12 N -0.690 5.690 13 C 0.065 3.935 14 C 0.435 3.565 15 O -0.625 6.625 16 N -0.572 5.572 17 C -0.337 4.337 18 H 0.078 0.922 19 C -0.011 4.011 20 N -0.920 5.920 21 Si 0.993 3.007 22 H -0.270 1.270 23 H -0.269 1.269 24 H -0.274 1.274 25 C -0.121 4.121 26 C -0.148 4.148 27 C -0.109 4.109 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.055 0.945 31 H 0.416 0.584 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.060 0.940 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.071 0.929 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.039 0.961 43 H 0.076 0.924 44 H 0.342 0.658 45 H 0.066 0.934 46 H 0.104 0.896 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.051 0.949 50 H 0.111 0.889 51 H 0.085 0.915 52 H 0.056 0.944 53 H 0.119 0.881 54 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.644 -36.687 -10.124 38.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.117 4.117 3 C 0.315 3.685 4 O -0.467 6.467 5 N -0.367 5.367 6 C -0.006 4.006 7 C -0.155 4.155 8 C -0.154 4.154 9 C -0.145 4.145 10 C -0.152 4.152 11 C -0.068 4.068 12 N -0.322 5.322 13 C -0.067 4.067 14 C 0.223 3.777 15 O -0.512 6.512 16 N -0.209 5.209 17 C -0.467 4.467 18 H 0.096 0.904 19 C -0.210 4.210 20 N -0.561 5.561 21 Si 0.816 3.184 22 H -0.195 1.195 23 H -0.194 1.194 24 H -0.199 1.199 25 C -0.159 4.159 26 C -0.186 4.186 27 C -0.146 4.146 28 H 0.107 0.893 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.253 0.747 32 H 0.071 0.929 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.057 0.943 43 H 0.095 0.905 44 H 0.161 0.839 45 H 0.084 0.916 46 H 0.122 0.878 47 H 0.231 0.769 48 H 0.088 0.912 49 H 0.070 0.930 50 H 0.129 0.871 51 H 0.104 0.896 52 H 0.075 0.925 53 H 0.137 0.863 54 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.014 -36.340 -10.643 38.197 hybrid contribution -0.784 1.338 0.060 1.551 sum -5.798 -35.002 -10.583 37.024 Atomic orbital electron populations 1.21756 0.90171 1.04376 1.02603 1.22018 0.97993 0.90428 1.01246 1.20596 0.81300 0.87125 0.79471 1.90682 1.33290 1.81515 1.41194 1.45923 1.41717 1.11734 1.37321 1.21365 0.97751 0.81720 0.99755 1.21700 1.00826 0.94619 0.98341 1.21467 1.00189 0.94409 0.99347 1.21452 1.00221 0.93400 0.99420 1.21526 1.00337 0.95491 0.97863 1.22087 0.96488 0.87711 1.00535 1.60093 1.60082 1.03251 1.08761 1.21536 0.96712 0.90040 0.98443 1.20935 0.85710 0.87779 0.83288 1.90485 1.35750 1.82546 1.42393 1.41928 1.36199 1.10380 1.32407 1.19686 1.20092 0.88465 1.18431 0.90412 1.26027 0.96720 1.03458 0.94842 1.69663 1.29070 1.36756 1.20573 0.84935 0.78417 0.77000 0.78026 1.19541 1.19399 1.19851 1.22905 0.98181 0.98485 0.96292 1.22833 0.96943 1.01994 0.96784 1.23017 0.97754 0.98532 0.95344 0.89297 0.90941 0.92610 0.74699 0.92916 0.92824 0.89914 0.90006 0.92153 0.92039 0.91025 0.91034 0.92315 0.92437 0.94290 0.90533 0.83931 0.91569 0.87834 0.76917 0.91228 0.92968 0.87094 0.89621 0.92543 0.86261 0.91373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.64 9.12 71.98 0.66 0.02 16 2 C -0.11 -1.16 1.26 -52.34 -0.07 -1.22 16 3 C 0.53 9.01 6.66 87.66 0.58 9.59 16 4 O -0.59 -15.82 15.76 -3.04 -0.05 -15.87 16 5 N -0.71 -8.29 5.44 -463.08 -2.52 -10.81 16 6 C 0.12 1.58 5.67 86.38 0.49 2.07 16 7 C -0.12 -1.02 5.33 30.59 0.16 -0.86 16 8 C -0.12 -1.41 5.21 30.59 0.16 -1.25 16 9 C -0.11 -1.39 5.21 30.59 0.16 -1.23 16 10 C -0.11 -2.20 5.47 30.59 0.17 -2.03 16 11 C 0.06 1.36 5.68 86.30 0.49 1.85 16 12 N -0.69 -22.31 6.13 -517.95 -3.17 -25.48 16 13 C 0.07 2.27 6.17 85.56 0.53 2.80 16 14 C 0.44 21.20 7.82 87.65 0.69 21.88 16 15 O -0.63 -35.59 15.78 -3.05 -0.05 -35.64 16 16 N -0.57 -29.78 5.29 -306.98 -1.62 -31.40 16 17 C -0.34 -19.43 9.68 84.04 0.81 -18.61 16 18 H 0.08 4.79 7.16 -2.91 -0.02 4.76 16 19 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 20 N -0.92 -49.75 13.05 21.66 0.28 -49.47 16 21 Si 0.99 43.13 29.55 68.60 2.03 45.16 16 22 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 23 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 24 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 25 C -0.12 -1.42 7.02 31.12 0.22 -1.20 16 26 C -0.15 -1.67 7.73 31.12 0.24 -1.43 16 27 C -0.11 -0.78 7.23 31.18 0.23 -0.55 16 28 H 0.09 0.12 7.95 -2.39 -0.02 0.10 16 29 H 0.07 0.16 7.00 -2.39 -0.02 0.14 16 30 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.42 2.16 7.36 -92.71 -0.68 1.47 16 32 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.07 0.81 8.14 -2.39 -0.02 0.80 16 39 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.06 1.29 8.14 -2.38 -0.02 1.28 16 41 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 43 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.34 11.67 8.43 -89.69 -0.76 10.91 16 45 H 0.07 2.01 8.14 -2.38 -0.02 2.00 16 46 H 0.10 3.26 8.14 -2.38 -0.02 3.24 16 47 H 0.40 19.49 7.90 -92.71 -0.73 18.76 16 48 H 0.28 14.04 8.31 -92.71 -0.77 13.27 16 49 H 0.05 0.92 7.43 -2.39 -0.02 0.90 16 50 H 0.11 0.75 8.10 -2.39 -0.02 0.73 16 51 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 52 H 0.06 0.94 8.08 -2.39 -0.02 0.92 16 53 H 0.12 0.26 7.97 -2.39 -0.02 0.25 16 54 H 0.07 0.53 8.10 -2.39 -0.02 0.51 16 Total: -1.00 -75.84 437.14 -0.40 -76.23 By element: Atomic # 1 Polarization: 38.81 SS G_CDS: -1.28 Total: 37.53 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: 5.98 Total: 9.74 kcal Atomic # 7 Polarization: -110.13 SS G_CDS: -7.03 Total: -117.16 kcal Atomic # 8 Polarization: -51.41 SS G_CDS: -0.10 Total: -51.50 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -75.84 -0.40 -76.23 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179256061.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.933 kcal (2) G-P(sol) polarization free energy of solvation -75.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds