Wall clock time and date at job start Sat Apr 11 2020 05:49:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.46954 * 2 1 4 4 C 1.50701 * 115.55420 * 294.96220 * 3 2 1 5 5 O 1.21281 * 119.99884 * 114.01863 * 4 3 2 6 6 N 1.34777 * 120.00384 * 294.02903 * 4 3 2 7 7 C 1.46494 * 120.00468 * 174.80828 * 6 4 3 8 8 C 1.52995 * 109.47355 * 179.97438 * 7 6 4 9 9 C 1.52999 * 109.47059 * 180.02562 * 8 7 6 10 10 C 1.53005 * 109.47089 * 180.02562 * 9 8 7 11 11 C 1.52990 * 109.47174 * 179.97438 * 10 9 8 12 12 C 1.53005 * 109.47174 * 179.97438 * 11 10 9 13 13 N 1.46900 * 109.47004 * 180.02562 * 12 11 10 14 14 C 1.46907 * 110.99708 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.46904 * 179.97438 * 14 13 12 16 16 O 1.21294 * 119.99988 * 359.97438 * 15 14 13 17 17 N 1.34770 * 119.99701 * 179.97438 * 15 14 13 18 18 C 1.37104 * 119.99958 * 179.97438 * 17 15 14 19 19 H 1.07998 * 119.99729 * 0.02562 * 18 17 15 20 20 C 1.38947 * 120.00193 * 179.97438 * 18 17 15 21 21 N 1.31413 * 120.00295 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 119.99992 * 0.02562 * 20 18 17 23 23 H 1.48506 * 109.47479 * 89.99372 * 22 20 18 24 24 H 1.48498 * 109.47309 * 209.99486 * 22 20 18 25 25 H 1.48504 * 109.47161 * 329.99239 * 22 20 18 26 26 C 1.53002 * 117.49862 * 80.63768 * 3 2 1 27 27 C 1.53004 * 117.49636 * 149.29691 * 3 2 1 28 28 H 1.08995 * 109.47429 * 59.70092 * 1 2 3 29 29 H 1.09003 * 109.46959 * 179.70604 * 1 2 3 30 30 H 1.09004 * 109.46982 * 299.70079 * 1 2 3 31 31 H 1.09006 * 109.46839 * 240.00347 * 2 1 3 32 32 H 1.08998 * 109.47424 * 120.00558 * 2 1 3 33 33 H 0.97006 * 119.99462 * 354.80350 * 6 4 3 34 34 H 1.09001 * 109.47281 * 59.99276 * 7 6 4 35 35 H 1.09002 * 109.46530 * 300.00144 * 7 6 4 36 36 H 1.09001 * 109.47006 * 300.00205 * 8 7 6 37 37 H 1.09005 * 109.47136 * 59.99971 * 8 7 6 38 38 H 1.09001 * 109.46867 * 299.99711 * 9 8 7 39 39 H 1.08988 * 109.47454 * 59.99843 * 9 8 7 40 40 H 1.09001 * 109.46896 * 300.00109 * 10 9 8 41 41 H 1.09000 * 109.46781 * 59.99735 * 10 9 8 42 42 H 1.09001 * 109.47451 * 299.99957 * 11 10 9 43 43 H 1.08996 * 109.47589 * 59.99817 * 11 10 9 44 44 H 1.09001 * 109.46936 * 299.99741 * 12 11 10 45 45 H 1.08992 * 109.46964 * 60.00215 * 12 11 10 46 46 H 1.00895 * 111.00473 * 56.04371 * 13 12 11 47 47 H 1.08995 * 109.46735 * 299.99375 * 14 13 12 48 48 H 1.08995 * 109.47403 * 59.99678 * 14 13 12 49 49 H 0.97002 * 120.00472 * 0.02562 * 17 15 14 50 50 H 0.96992 * 120.00195 * 180.02562 * 21 20 18 51 51 H 1.09000 * 117.50038 * 215.00144 * 26 3 2 52 52 H 1.09001 * 117.49623 * 0.02562 * 26 3 2 53 53 H 1.08993 * 117.50211 * 359.97284 * 27 3 2 54 54 H 1.09002 * 117.49884 * 144.97607 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.7157 2.2466 -1.2326 5 8 0.9671 3.1978 -1.1565 6 7 2.2573 1.9087 -2.4196 7 6 1.8551 2.6177 -3.6368 8 6 2.6137 2.0442 -4.8353 9 6 2.1940 2.7852 -6.1064 10 6 2.9521 2.2113 -7.3051 11 6 2.5321 2.9518 -8.5763 12 6 3.2906 2.3783 -9.7749 13 7 2.8877 3.0898 -10.9953 14 6 3.5971 2.5642 -12.1695 15 6 3.1584 3.3163 -13.3996 16 8 2.3354 4.2025 -13.3073 17 7 3.6806 3.0041 -14.6022 18 6 3.2811 3.6879 -15.7214 19 1 2.5483 4.4770 -15.6392 20 6 3.8198 3.3664 -16.9612 21 7 3.4366 4.0215 -18.0340 22 14 5.0878 2.0021 -17.1032 23 1 4.3986 0.7089 -17.3446 24 1 6.0039 2.2935 -18.2350 25 1 5.8689 1.9190 -15.8429 26 6 2.0673 2.1821 1.3391 27 6 3.3757 1.7195 0.6930 28 1 -0.3634 0.5184 -0.8872 29 1 -0.3633 -1.0277 -0.0053 30 1 -0.3633 0.5092 0.8927 31 1 1.8934 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 2.9136 1.1959 -2.4678 34 1 2.0875 3.6776 -3.5334 35 1 0.7833 2.4942 -3.7917 36 1 3.6854 2.1680 -4.6800 37 1 2.3816 0.9842 -4.9388 38 1 1.1223 2.6617 -6.2619 39 1 2.4264 3.8450 -6.0027 40 1 4.0240 2.3343 -7.1499 41 1 2.7193 1.1515 -7.4087 42 1 1.4602 2.8284 -8.7313 43 1 2.7645 4.0117 -8.4730 44 1 4.3624 2.5022 -9.6197 45 1 3.0586 1.3184 -9.8784 46 1 3.0333 4.0835 -10.8994 47 1 4.6710 2.6887 -12.0309 48 1 3.3665 1.5057 -12.2897 49 1 4.3385 2.2951 -14.6761 50 1 3.8123 3.7968 -18.8995 51 1 1.8506 3.2503 1.3286 52 1 1.7223 1.6408 2.2201 53 1 3.8908 0.8743 1.1492 54 1 4.0199 2.4831 0.2572 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179496118.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:57 Heat of formation + Delta-G solvation = -105.184796 kcal Electronic energy + Delta-G solvation = -27440.482419 eV Core-core repulsion = 23410.677668 eV Total energy + Delta-G solvation = -4029.804752 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.24688 -40.31420 -38.28934 -37.79702 -36.82423 -35.98804 -35.08924 -33.76032 -32.85946 -32.33486 -29.42960 -27.64475 -26.02240 -25.14749 -24.02322 -23.41536 -22.93264 -22.21622 -21.93641 -21.26206 -20.31296 -20.21169 -17.81042 -17.78383 -17.30822 -17.10335 -16.98003 -16.71962 -16.33707 -15.87200 -15.74382 -15.62088 -15.19726 -15.00324 -14.85743 -14.75724 -14.38815 -14.22669 -14.16180 -13.80638 -13.68198 -13.52808 -13.37990 -13.16596 -12.91155 -12.64481 -12.53340 -12.43605 -12.41906 -12.37087 -12.14837 -11.98513 -11.89077 -11.73849 -11.65505 -11.52092 -11.37233 -11.32276 -10.98587 -10.76919 -10.44816 -10.25772 -10.15006 -9.30758 -8.41900 -6.03370 1.30148 1.36022 1.44940 1.50838 1.94453 2.11058 2.23098 2.70582 2.74052 3.14302 3.41830 3.59102 3.74088 3.81552 3.85384 3.96569 4.01101 4.11188 4.19318 4.20907 4.24787 4.38161 4.43252 4.51147 4.51770 4.53328 4.58541 4.62714 4.72536 4.73377 4.78096 4.86740 4.94427 4.97891 5.00927 5.03017 5.05412 5.08625 5.16016 5.19008 5.20811 5.30707 5.35010 5.42501 5.49859 5.51833 5.55394 5.90860 6.09059 6.40320 6.51227 6.59317 6.87066 7.20217 7.38724 7.95550 8.75921 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.036084 B = 0.001090 C = 0.001081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.791692 B =25672.758539 C =25899.576149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.073 4.073 3 C -0.168 4.168 4 C 0.543 3.457 5 O -0.589 6.589 6 N -0.713 5.713 7 C 0.117 3.883 8 C -0.116 4.116 9 C -0.117 4.117 10 C -0.106 4.106 11 C -0.116 4.116 12 C 0.061 3.939 13 N -0.694 5.694 14 C 0.062 3.938 15 C 0.446 3.554 16 O -0.617 6.617 17 N -0.590 5.590 18 C -0.333 4.333 19 H 0.054 0.946 20 C -0.014 4.014 21 N -0.935 5.935 22 Si 0.966 3.034 23 H -0.256 1.256 24 H -0.274 1.274 25 H -0.230 1.230 26 C -0.157 4.157 27 C -0.139 4.139 28 H 0.029 0.971 29 H 0.072 0.928 30 H 0.051 0.949 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.417 0.583 34 H 0.052 0.948 35 H 0.053 0.947 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.057 0.943 43 H 0.055 0.945 44 H 0.042 0.958 45 H 0.080 0.920 46 H 0.342 0.658 47 H 0.077 0.923 48 H 0.114 0.886 49 H 0.390 0.610 50 H 0.280 0.720 51 H 0.079 0.921 52 H 0.120 0.880 53 H 0.132 0.868 54 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.641 -16.052 40.839 44.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.111 4.111 3 C -0.171 4.171 4 C 0.331 3.669 5 O -0.469 6.469 6 N -0.364 5.364 7 C -0.006 4.006 8 C -0.154 4.154 9 C -0.155 4.155 10 C -0.144 4.144 11 C -0.154 4.154 12 C -0.067 4.067 13 N -0.327 5.327 14 C -0.070 4.070 15 C 0.234 3.766 16 O -0.501 6.501 17 N -0.232 5.232 18 C -0.462 4.462 19 H 0.072 0.928 20 C -0.212 4.212 21 N -0.575 5.575 22 Si 0.786 3.214 23 H -0.181 1.181 24 H -0.199 1.199 25 H -0.153 1.153 26 C -0.195 4.195 27 C -0.176 4.176 28 H 0.048 0.952 29 H 0.091 0.909 30 H 0.070 0.930 31 H 0.101 0.899 32 H 0.114 0.886 33 H 0.254 0.746 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.060 0.940 45 H 0.098 0.902 46 H 0.161 0.839 47 H 0.095 0.905 48 H 0.132 0.868 49 H 0.226 0.774 50 H 0.089 0.911 51 H 0.098 0.902 52 H 0.138 0.862 53 H 0.150 0.850 54 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.001 -15.147 40.602 43.623 hybrid contribution 1.097 0.329 -0.926 1.473 sum 6.098 -14.818 39.676 42.789 Atomic orbital electron populations 1.21744 0.96176 1.02090 1.00989 1.21058 0.95332 0.90266 1.04433 1.21555 1.05740 0.98024 0.91820 1.20114 0.78877 0.83115 0.84829 1.90690 1.38807 1.30788 1.86636 1.45889 1.44861 1.39320 1.06378 1.21378 0.99112 0.96240 0.83897 1.21695 1.00734 1.00912 0.92056 1.21475 1.00434 0.99907 0.93692 1.21447 1.00510 1.00058 0.92404 1.21535 1.00337 0.99807 0.93724 1.22083 0.97638 0.98922 0.88049 1.60084 1.61045 1.09073 1.02450 1.21633 0.97546 0.99993 0.87817 1.21061 0.83986 0.86184 0.85370 1.90542 1.37189 1.35800 1.86594 1.42024 1.40138 1.34601 1.06386 1.19031 1.24098 1.17111 0.85942 0.92812 1.26131 1.00439 1.01021 0.93655 1.69806 1.44971 1.42890 0.99859 0.85349 0.78059 0.77885 0.80122 1.18085 1.19943 1.15348 1.23043 1.01417 1.00334 0.94664 1.23227 0.89107 1.04152 1.01094 0.95163 0.90923 0.92961 0.89920 0.88616 0.74624 0.92972 0.92890 0.89944 0.89858 0.92201 0.92176 0.90957 0.90901 0.92424 0.92616 0.94003 0.90192 0.83943 0.90547 0.86787 0.77380 0.91093 0.90237 0.86212 0.85031 0.88742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.78 71.98 0.70 -0.80 16 2 C -0.07 -0.45 5.81 30.59 0.18 -0.27 16 3 C -0.17 -1.72 1.90 -52.93 -0.10 -1.82 16 4 C 0.54 9.27 6.45 87.66 0.57 9.84 16 5 O -0.59 -16.08 16.72 -3.03 -0.05 -16.13 16 6 N -0.71 -8.09 5.55 -463.07 -2.57 -10.66 16 7 C 0.12 1.54 5.68 86.38 0.49 2.03 16 8 C -0.12 -0.93 5.33 30.59 0.16 -0.76 16 9 C -0.12 -1.33 5.21 30.60 0.16 -1.17 16 10 C -0.11 -1.23 5.21 30.59 0.16 -1.07 16 11 C -0.12 -2.06 5.47 30.59 0.17 -1.90 16 12 C 0.06 1.23 5.69 86.30 0.49 1.72 16 13 N -0.69 -20.74 6.12 -517.92 -3.17 -23.91 16 14 C 0.06 1.92 6.17 85.56 0.53 2.45 16 15 C 0.45 20.50 7.82 87.66 0.69 21.18 16 16 O -0.62 -35.05 15.78 -3.07 -0.05 -35.10 16 17 N -0.59 -28.09 5.09 -306.99 -1.56 -29.65 16 18 C -0.33 -19.74 10.16 84.04 0.85 -18.88 16 19 H 0.05 3.81 7.39 -2.91 -0.02 3.79 16 20 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 21 N -0.93 -56.69 13.96 21.66 0.30 -56.39 16 22 Si 0.97 38.62 27.74 68.60 1.90 40.52 16 23 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 24 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 25 H -0.23 -7.68 6.52 99.48 0.65 -7.03 16 26 C -0.16 -1.62 9.78 30.62 0.30 -1.32 16 27 C -0.14 -0.83 9.93 30.62 0.30 -0.53 16 28 H 0.03 0.44 7.70 -2.39 -0.02 0.42 16 29 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.05 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.08 0.30 8.14 -2.38 -0.02 0.28 16 32 H 0.10 0.22 8.09 -2.39 -0.02 0.20 16 33 H 0.42 2.03 8.48 -92.70 -0.79 1.24 16 34 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.08 0.49 8.14 -2.38 -0.02 0.47 16 38 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16 40 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 45 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.34 11.02 8.43 -89.70 -0.76 10.26 16 47 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 48 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 49 H 0.39 15.22 5.76 -92.71 -0.53 14.69 16 50 H 0.28 15.44 8.31 -92.71 -0.77 14.67 16 51 H 0.08 1.20 8.00 -2.39 -0.02 1.18 16 52 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 53 H 0.13 0.12 8.14 -2.39 -0.02 0.10 16 54 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 Total: -1.00 -84.80 442.58 -0.34 -85.14 By element: Atomic # 1 Polarization: 39.05 SS G_CDS: -1.25 Total: 37.80 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: 6.12 Total: 8.39 kcal Atomic # 7 Polarization: -113.61 SS G_CDS: -7.00 Total: -120.62 kcal Atomic # 8 Polarization: -51.14 SS G_CDS: -0.10 Total: -51.23 kcal Atomic # 14 Polarization: 38.62 SS G_CDS: 1.90 Total: 40.52 kcal Total: -84.80 -0.34 -85.14 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179496118.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.045 kcal (2) G-P(sol) polarization free energy of solvation -84.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds