Wall clock time and date at job start Sat Apr 11 2020 05:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86795 * 119.99855 * 2 1 4 4 H 1.48499 * 109.47566 * 270.00229 * 3 2 1 5 5 H 1.48500 * 109.47355 * 30.00068 * 3 2 1 6 6 H 1.48502 * 109.47187 * 150.00133 * 3 2 1 7 7 C 1.38815 * 120.00063 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99925 * 0.02562 * 7 2 1 9 9 N 1.36941 * 119.99930 * 179.97438 * 7 2 1 10 10 C 1.46495 * 119.99647 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.46880 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.47236 * 180.02562 * 11 10 9 13 13 C 1.53007 * 109.46959 * 180.02562 * 12 11 10 14 14 C 1.52992 * 109.46712 * 179.97438 * 13 12 11 15 15 C 1.53000 * 109.46989 * 179.97438 * 14 13 12 16 16 N 1.46507 * 109.47138 * 180.02562 * 15 14 13 17 17 C 1.34777 * 119.99709 * 180.02562 * 16 15 14 18 18 O 1.21279 * 120.00311 * 359.97438 * 17 16 15 19 19 C 1.50703 * 119.99745 * 180.02562 * 17 16 15 20 20 C 1.53000 * 109.47173 * 179.97438 * 19 17 16 21 21 N 1.46499 * 109.46981 * 180.02562 * 20 19 17 22 22 C 1.34777 * 119.99553 * 180.02562 * 21 20 19 23 23 O 1.21278 * 120.00088 * 359.97438 * 22 21 20 24 24 C 1.50703 * 119.99745 * 179.97438 * 22 21 20 25 25 C 1.53781 * 113.61417 * 179.97438 * 24 22 21 26 26 C 1.53786 * 87.17350 * 139.93966 * 25 24 22 27 27 C 1.53782 * 113.61283 * 277.49692 * 24 22 21 28 28 H 0.96999 * 120.00076 * 0.02562 * 1 2 3 29 29 H 0.97003 * 119.99747 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.47216 * 60.00822 * 10 9 7 31 31 H 1.08997 * 109.47751 * 300.00073 * 10 9 7 32 32 H 1.09000 * 109.47265 * 59.99864 * 11 10 9 33 33 H 1.09004 * 109.46932 * 300.00074 * 11 10 9 34 34 H 1.08994 * 109.47163 * 60.00049 * 12 11 10 35 35 H 1.08999 * 109.46658 * 300.00093 * 12 11 10 36 36 H 1.09001 * 109.46813 * 60.00135 * 13 12 11 37 37 H 1.08997 * 109.46977 * 300.00107 * 13 12 11 38 38 H 1.09007 * 109.47389 * 60.00147 * 14 13 12 39 39 H 1.08997 * 109.47620 * 299.99877 * 14 13 12 40 40 H 1.08994 * 109.47005 * 60.00115 * 15 14 13 41 41 H 1.08999 * 109.47373 * 299.99818 * 15 14 13 42 42 H 0.97003 * 120.00070 * 359.97438 * 16 15 14 43 43 H 1.09000 * 109.47332 * 59.99493 * 19 17 16 44 44 H 1.08999 * 109.46703 * 299.99911 * 19 17 16 45 45 H 1.08994 * 109.47005 * 59.99969 * 20 19 17 46 46 H 1.09004 * 109.46932 * 299.99834 * 20 19 17 47 47 H 0.96993 * 120.00243 * 359.97438 * 21 20 19 48 48 H 1.08996 * 112.85169 * 48.79875 * 24 22 21 49 49 H 1.09002 * 113.61445 * 254.52965 * 25 24 22 50 50 H 1.09002 * 113.61408 * 25.34696 * 25 24 22 51 51 H 1.08993 * 113.61491 * 89.15923 * 26 25 24 52 52 H 1.09000 * 113.61138 * 220.06261 * 26 25 24 53 53 H 1.08997 * 113.61668 * 334.56418 * 27 24 22 54 54 H 1.08998 * 113.61674 * 105.38927 * 27 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4703 -2.1375 -0.0014 9 7 3.3797 -1.2021 -0.0011 10 6 4.1121 -2.4708 -0.0011 11 6 5.6164 -2.1913 -0.0011 12 6 6.3814 -3.5163 -0.0017 13 6 7.8857 -3.2366 -0.0011 14 6 8.6507 -4.5616 -0.0011 15 6 10.1549 -4.2820 -0.0011 16 7 10.8875 -5.5508 -0.0017 17 6 12.2352 -5.5507 -0.0013 18 8 12.8416 -4.5004 -0.0009 19 6 12.9888 -6.8558 -0.0025 20 6 14.4930 -6.5762 -0.0024 21 7 15.2255 -7.8450 -0.0042 22 6 16.5732 -7.8449 -0.0039 23 8 17.1796 -6.7946 -0.0026 24 6 17.3268 -9.1500 -0.0051 25 6 18.8550 -8.9790 -0.0052 26 6 18.9106 -10.1566 0.9823 27 6 17.4752 -9.7769 1.3912 28 1 -0.4850 0.8400 -0.0004 29 1 3.8647 -0.3620 -0.0007 30 1 3.8486 -3.0426 -0.8909 31 1 3.8492 -3.0423 0.8891 32 1 5.8797 -1.6197 0.8889 33 1 5.8797 -1.6197 -0.8911 34 1 6.1181 -4.0875 -0.8919 35 1 6.1181 -4.0882 0.8880 36 1 8.1487 -2.6656 0.8894 37 1 8.1493 -2.6645 -0.8906 38 1 8.3877 -5.1330 -0.8913 39 1 8.3871 -5.1334 0.8886 40 1 10.4182 -3.7105 0.8889 41 1 10.4183 -3.7105 -0.8910 42 1 10.4025 -6.3909 -0.0016 43 1 12.7257 -7.4265 -0.8931 44 1 12.7251 -7.4283 0.8868 45 1 14.7564 -6.0055 0.8881 46 1 14.7562 -6.0039 -0.8919 47 1 14.7405 -8.6850 -0.0048 48 1 16.9656 -9.8466 -0.7617 49 1 19.3184 -9.1943 -0.9681 50 1 19.1886 -8.0338 0.4231 51 1 18.9831 -11.1300 0.4973 52 1 19.6424 -10.0239 1.7792 53 1 17.4316 -9.0507 2.2028 54 1 16.8241 -10.6354 1.5559 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001179801769.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:24 Heat of formation + Delta-G solvation = -105.183371 kcal Electronic energy + Delta-G solvation = -27034.094561 eV Core-core repulsion = 23004.289871 eV Total energy + Delta-G solvation = -4029.804690 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -41.34128 -40.74861 -38.47892 -37.99264 -36.90299 -36.20908 -35.32816 -33.71239 -32.46685 -31.53548 -28.70570 -27.69664 -26.52712 -25.76329 -24.45697 -23.31423 -22.25758 -22.09425 -22.04325 -21.19455 -20.25644 -19.61750 -18.56274 -18.07142 -17.27430 -16.92350 -16.84677 -16.73714 -16.58786 -16.40101 -15.96331 -15.79528 -15.47377 -15.26664 -14.89304 -14.63534 -14.52817 -14.16234 -14.01498 -13.80367 -13.47920 -13.40135 -13.35504 -13.05326 -13.00972 -12.89932 -12.68755 -12.47820 -12.46638 -12.15269 -12.08658 -11.89276 -11.86289 -11.80966 -11.54973 -11.43998 -11.34100 -11.28537 -11.03690 -10.98167 -10.71595 -10.20880 -10.09409 -9.31958 -8.05497 -5.39263 1.36632 1.40119 1.47751 1.57591 1.59766 1.88721 2.46765 2.47667 3.26088 3.52114 3.56613 3.59589 3.67135 3.83877 3.89323 3.92487 3.98357 4.01349 4.05310 4.23164 4.24444 4.25048 4.31092 4.50377 4.58712 4.61727 4.71023 4.77881 4.80155 4.81574 4.85269 4.86755 4.92715 4.97342 4.99892 5.04380 5.04970 5.10073 5.15256 5.18704 5.27925 5.34070 5.36161 5.45173 5.52796 5.53432 5.55507 5.73258 6.19411 6.51000 6.57239 7.05901 7.22950 7.27115 7.82896 8.01819 9.16293 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.050377 B = 0.001002 C = 0.000988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.675697 B =27941.452750 C =28328.702757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.064 4.064 3 Si 0.958 3.042 4 H -0.276 1.276 5 H -0.293 1.293 6 H -0.252 1.252 7 C -0.241 4.241 8 H 0.056 0.944 9 N -0.764 5.764 10 C 0.150 3.850 11 C -0.122 4.122 12 C -0.105 4.105 13 C -0.115 4.115 14 C -0.117 4.117 15 C 0.118 3.882 16 N -0.715 5.715 17 C 0.508 3.492 18 O -0.594 6.594 19 C -0.135 4.135 20 C 0.136 3.864 21 N -0.712 5.712 22 C 0.512 3.488 23 O -0.594 6.594 24 C -0.131 4.131 25 C -0.133 4.133 26 C -0.134 4.134 27 C -0.118 4.118 28 H 0.259 0.741 29 H 0.366 0.634 30 H 0.023 0.977 31 H 0.022 0.978 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.420 0.580 43 H 0.136 0.864 44 H 0.136 0.864 45 H 0.046 0.954 46 H 0.047 0.953 47 H 0.422 0.578 48 H 0.146 0.854 49 H 0.077 0.923 50 H 0.064 0.936 51 H 0.104 0.896 52 H 0.070 0.930 53 H 0.068 0.932 54 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 38.493 -29.095 0.627 48.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.255 4.255 3 Si 0.784 3.216 4 H -0.202 1.202 5 H -0.220 1.220 6 H -0.177 1.177 7 C -0.372 4.372 8 H 0.074 0.926 9 N -0.410 5.410 10 C 0.024 3.976 11 C -0.160 4.160 12 C -0.144 4.144 13 C -0.153 4.153 14 C -0.155 4.155 15 C -0.006 4.006 16 N -0.368 5.368 17 C 0.295 3.705 18 O -0.474 6.474 19 C -0.175 4.175 20 C 0.011 3.989 21 N -0.365 5.365 22 C 0.300 3.700 23 O -0.474 6.474 24 C -0.152 4.152 25 C -0.171 4.171 26 C -0.172 4.172 27 C -0.155 4.155 28 H 0.068 0.932 29 H 0.199 0.801 30 H 0.041 0.959 31 H 0.040 0.960 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.258 0.742 43 H 0.154 0.846 44 H 0.154 0.846 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.260 0.740 48 H 0.163 0.837 49 H 0.095 0.905 50 H 0.083 0.917 51 H 0.123 0.877 52 H 0.088 0.912 53 H 0.087 0.913 54 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 39.112 -27.724 0.631 47.945 hybrid contribution -0.635 1.120 -0.043 1.289 sum 38.477 -26.604 0.588 46.782 Atomic orbital electron populations 1.69889 1.07195 1.26840 1.59615 1.25548 0.96164 1.01404 1.02406 0.85372 0.78634 0.79334 0.78242 1.20247 1.21962 1.17661 1.19095 0.82891 0.93573 1.41634 0.92644 1.42824 1.02590 1.04549 1.91023 1.20869 0.91630 0.87101 0.97972 1.21715 0.93045 0.99233 1.01985 1.21424 0.94227 0.95868 1.02836 1.21463 0.94002 0.97373 1.02447 1.21690 0.91453 0.98259 1.04100 1.21331 0.92056 0.85923 1.01296 1.45907 1.05819 1.10555 1.74495 1.21052 0.82865 0.91619 0.74981 1.90761 1.69228 1.35894 1.51554 1.21750 0.92211 0.95040 1.08506 1.20810 0.90895 0.85874 1.01354 1.45821 1.06014 1.09819 1.74862 1.21292 0.82588 0.91804 0.74275 1.90709 1.69394 1.35795 1.51480 1.22936 0.96204 0.93787 1.02279 1.22834 0.93812 0.99336 1.01097 1.22881 0.96757 0.98608 0.98909 1.22849 0.98361 1.00806 0.93531 0.93214 0.80115 0.95881 0.96003 0.92095 0.91966 0.91208 0.91263 0.91932 0.91886 0.89882 0.89891 0.92825 0.92814 0.74213 0.84577 0.84594 0.93555 0.93495 0.73977 0.83679 0.90450 0.91745 0.87740 0.91157 0.91340 0.87853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.12 13.97 21.65 0.30 -63.81 16 2 C -0.06 -3.84 5.50 84.86 0.47 -3.37 16 3 Si 0.96 46.13 27.73 68.60 1.90 48.03 16 4 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 5 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.25 -10.98 6.52 99.48 0.65 -10.33 16 7 C -0.24 -14.18 10.47 84.03 0.88 -13.30 16 8 H 0.06 3.55 8.06 -2.91 -0.02 3.53 16 9 N -0.76 -36.86 5.41 -343.46 -1.86 -38.71 16 10 C 0.15 5.69 6.26 86.38 0.54 6.23 16 11 C -0.12 -3.36 5.33 30.60 0.16 -3.20 16 12 C -0.11 -2.04 5.22 30.60 0.16 -1.88 16 13 C -0.11 -1.77 5.21 30.59 0.16 -1.61 16 14 C -0.12 -1.22 5.33 30.59 0.16 -1.06 16 15 C 0.12 1.61 5.67 86.38 0.49 2.10 16 16 N -0.72 -6.82 5.56 -463.05 -2.57 -9.39 16 17 C 0.51 7.27 7.83 87.66 0.69 7.96 16 18 O -0.59 -15.63 15.98 -3.03 -0.05 -15.68 16 19 C -0.14 -0.65 5.81 29.85 0.17 -0.48 16 20 C 0.14 1.82 4.96 86.38 0.43 2.25 16 21 N -0.71 -5.89 5.56 -463.06 -2.57 -8.46 16 22 C 0.51 7.59 7.35 87.66 0.64 8.24 16 23 O -0.59 -15.83 15.90 -3.02 -0.05 -15.88 16 24 C -0.13 -0.90 4.15 -11.01 -0.05 -0.94 16 25 C -0.13 -1.31 7.40 31.12 0.23 -1.08 16 26 C -0.13 -0.63 8.10 31.20 0.25 -0.37 16 27 C -0.12 -0.51 7.64 31.20 0.24 -0.27 16 28 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 29 H 0.37 16.71 5.53 -92.71 -0.51 16.20 16 30 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.02 0.84 8.14 -2.39 -0.02 0.83 16 32 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16 36 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.08 0.70 8.14 -2.38 -0.02 0.68 16 39 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.42 0.80 8.47 -92.71 -0.79 0.01 16 43 H 0.14 -0.21 8.14 -2.39 -0.02 -0.23 16 44 H 0.14 -0.20 8.14 -2.39 -0.02 -0.22 16 45 H 0.05 0.91 8.10 -2.39 -0.02 0.89 16 46 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 47 H 0.42 -0.35 8.47 -92.71 -0.79 -1.14 16 48 H 0.15 0.08 8.14 -2.39 -0.02 0.06 16 49 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 50 H 0.06 1.04 7.43 -2.39 -0.02 1.02 16 51 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 52 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 53 H 0.07 0.54 8.09 -2.39 -0.02 0.53 16 54 H 0.10 -0.08 8.14 -2.39 -0.02 -0.10 16 Total: -1.00 -89.76 438.34 -0.52 -90.28 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -1.26 Total: 14.41 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: 5.63 Total: -0.79 kcal Atomic # 7 Polarization: -113.68 SS G_CDS: -6.70 Total: -120.38 kcal Atomic # 8 Polarization: -31.46 SS G_CDS: -0.10 Total: -31.56 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.90 Total: 48.03 kcal Total: -89.76 -0.52 -90.28 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179801769.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.901 kcal (2) G-P(sol) polarization free energy of solvation -89.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds