Wall clock time and date at job start Sat Apr 11 2020 05:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86794 * 119.99914 * 2 1 4 4 H 1.48498 * 109.47302 * 269.99711 * 3 2 1 5 5 H 1.48502 * 109.47249 * 30.00101 * 3 2 1 6 6 H 1.48506 * 109.46853 * 149.99787 * 3 2 1 7 7 C 1.38812 * 119.99897 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00104 * 180.02562 * 7 2 1 9 9 N 1.36942 * 120.00360 * 0.02562 * 7 2 1 10 10 C 1.46494 * 120.00244 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47308 * 179.97438 * 10 9 7 12 12 C 1.52991 * 109.47375 * 180.02562 * 11 10 9 13 13 C 1.53003 * 109.47375 * 179.97438 * 12 11 10 14 14 C 1.53001 * 109.47409 * 180.02562 * 13 12 11 15 15 C 1.52990 * 109.47235 * 180.02562 * 14 13 12 16 16 N 1.46503 * 109.47558 * 179.97438 * 15 14 13 17 17 C 1.34769 * 120.00487 * 180.02562 * 16 15 14 18 18 O 1.21281 * 120.00165 * 359.97438 * 17 16 15 19 19 C 1.50696 * 120.00105 * 179.97438 * 17 16 15 20 20 C 1.53003 * 109.47350 * 179.97438 * 19 17 16 21 21 H 1.08999 * 109.73474 * 28.97048 * 20 19 17 22 22 C 1.52991 * 109.60684 * 268.56447 * 20 19 17 23 23 C 1.51806 * 110.88006 * 326.68044 * 22 20 19 24 24 C 1.51788 * 113.82835 * 293.04140 * 23 22 20 25 25 C 1.53068 * 110.74906 * 66.79107 * 24 23 22 26 26 C 1.51422 * 108.48982 * 275.08127 * 25 24 23 27 27 O 1.21285 * 119.88927 * 251.19062 * 26 25 24 28 28 N 1.33373 * 120.21545 * 71.21704 * 26 25 24 29 29 H 0.96993 * 120.00431 * 359.97438 * 1 2 3 30 30 H 0.97001 * 119.99727 * 359.97438 * 9 7 2 31 31 H 1.09006 * 109.47187 * 60.00504 * 10 9 7 32 32 H 1.08994 * 109.47465 * 300.00429 * 10 9 7 33 33 H 1.08998 * 109.46615 * 59.99824 * 11 10 9 34 34 H 1.09002 * 109.47016 * 300.00398 * 11 10 9 35 35 H 1.09011 * 109.47262 * 59.99950 * 12 11 10 36 36 H 1.09002 * 109.47241 * 300.00098 * 12 11 10 37 37 H 1.08998 * 109.46615 * 59.99662 * 13 12 11 38 38 H 1.09002 * 109.47016 * 300.00236 * 13 12 11 39 39 H 1.08998 * 109.47074 * 59.99583 * 14 13 12 40 40 H 1.09001 * 109.46647 * 300.00068 * 14 13 12 41 41 H 1.09006 * 109.47443 * 60.00086 * 15 14 13 42 42 H 1.09002 * 109.47022 * 300.00063 * 15 14 13 43 43 H 0.97001 * 119.99605 * 0.02562 * 16 15 14 44 44 H 1.09006 * 109.47204 * 60.00306 * 19 17 16 45 45 H 1.08994 * 109.47406 * 300.00256 * 19 17 16 46 46 H 1.09000 * 109.19824 * 87.06136 * 22 20 19 47 47 H 1.08991 * 109.19882 * 206.34617 * 22 20 19 48 48 H 1.09001 * 108.62960 * 171.90257 * 23 22 20 49 49 H 1.09007 * 108.59201 * 54.15435 * 23 22 20 50 50 H 1.09000 * 109.22481 * 306.47029 * 24 23 22 51 51 H 1.09003 * 109.22645 * 187.12149 * 24 23 22 52 52 H 1.08998 * 109.62900 * 34.78195 * 25 24 23 53 53 H 1.08998 * 109.63188 * 155.37900 * 25 24 23 54 54 H 0.96997 * 119.78053 * 180.30080 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0638 -4.8198 0.0012 12 6 1.8288 -6.1447 0.0018 13 6 0.8346 -7.3077 0.0031 14 6 1.5995 -8.6328 0.0044 15 6 0.6054 -9.7956 0.0051 16 7 1.3378 -11.0644 0.0057 17 6 0.6640 -12.2316 0.0058 18 8 -0.5488 -12.2316 0.0058 19 6 1.4174 -13.5366 0.0058 20 6 0.4232 -14.6996 0.0066 21 1 -0.4984 -14.3963 -0.4900 22 6 0.1177 -15.1129 1.4476 23 6 1.3349 -14.9229 2.3346 24 6 2.4861 -15.8554 2.0042 25 6 3.0689 -15.5305 0.6266 26 6 2.2505 -16.2520 -0.4234 27 8 2.7258 -17.1977 -1.0156 28 7 1.0089 -15.8506 -0.6995 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3881 0.0005 31 1 2.6847 -3.7146 0.8906 32 1 2.6848 -3.7146 -0.8893 33 1 0.4369 -4.7622 -0.8886 34 1 0.4375 -4.7618 0.8914 35 1 2.4556 -6.2021 0.8919 36 1 2.4554 -6.2030 -0.8882 37 1 0.2075 -7.2505 -0.8866 38 1 0.2083 -7.2493 0.8933 39 1 2.2263 -8.6895 0.8943 40 1 2.2261 -8.6913 -0.8856 41 1 -0.0211 -9.7386 -0.8852 42 1 -0.0216 -9.7371 0.8948 43 1 2.3078 -11.0644 0.0060 44 1 2.0441 -13.5944 0.8959 45 1 2.0441 -13.5945 -0.8841 46 1 -0.7024 -14.5044 1.8288 47 1 -0.1774 -16.1619 1.4647 48 1 1.0398 -15.0880 3.3709 49 1 1.6808 -13.8940 2.2344 50 1 2.1268 -16.8845 2.0081 51 1 3.2651 -15.7452 2.7586 52 1 3.0213 -14.4554 0.4532 53 1 4.1046 -15.8667 0.5786 54 1 0.4888 -16.3201 -1.3702 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180158331.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:35 Heat of formation + Delta-G solvation = -101.317128 kcal Electronic energy + Delta-G solvation = -28518.523854 eV Core-core repulsion = 24488.886818 eV Total energy + Delta-G solvation = -4029.637037 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.06020 -40.43906 -38.30452 -37.81640 -36.70023 -35.29471 -34.91337 -33.52937 -32.38154 -31.72589 -30.62923 -28.23579 -26.56975 -25.61023 -24.79897 -23.65352 -22.24962 -22.10293 -21.70739 -20.86151 -20.14345 -19.12012 -18.92769 -17.82248 -17.41659 -17.09177 -16.86703 -16.67033 -16.49560 -16.11306 -15.52320 -15.38083 -15.33925 -15.19514 -15.02459 -14.78517 -14.57111 -14.29378 -14.02670 -13.87521 -13.68095 -13.39442 -13.05242 -13.01543 -12.92322 -12.69455 -12.57595 -12.37302 -12.33598 -12.15448 -11.99727 -11.83994 -11.78078 -11.77888 -11.63527 -11.45655 -11.31931 -11.22412 -10.93041 -10.89480 -10.64593 -10.18639 -10.05318 -9.01052 -7.96154 -5.25699 1.47216 1.49578 1.58147 1.58678 1.65842 2.04859 2.44548 2.56115 3.37430 3.44167 3.55993 3.72310 3.76277 3.83713 3.89767 4.04427 4.05093 4.10841 4.19918 4.27863 4.32960 4.35762 4.37755 4.46635 4.51721 4.61480 4.62825 4.67875 4.81236 4.81689 4.89287 4.90334 5.00001 5.01038 5.01704 5.09272 5.10352 5.19464 5.24127 5.24895 5.31808 5.38208 5.41309 5.47687 5.50724 5.55805 5.58945 5.80874 6.26500 6.26650 6.58390 7.21231 7.27979 7.32056 8.09476 8.32027 9.27671 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.032719 B = 0.001209 C = 0.001199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.562258 B =23161.270334 C =23350.169289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.077 4.077 3 Si 0.977 3.023 4 H -0.286 1.286 5 H -0.294 1.294 6 H -0.268 1.268 7 C -0.251 4.251 8 H 0.076 0.924 9 N -0.752 5.752 10 C 0.147 3.853 11 C -0.117 4.117 12 C -0.104 4.104 13 C -0.114 4.114 14 C -0.118 4.118 15 C 0.120 3.880 16 N -0.718 5.718 17 C 0.513 3.487 18 O -0.581 6.581 19 C -0.179 4.179 20 C 0.152 3.848 21 H 0.104 0.896 22 C -0.132 4.132 23 C -0.132 4.132 24 C -0.109 4.109 25 C -0.167 4.167 26 C 0.514 3.486 27 O -0.607 6.607 28 N -0.712 5.712 29 H 0.252 0.748 30 H 0.373 0.627 31 H 0.020 0.980 32 H 0.019 0.981 33 H 0.053 0.947 34 H 0.054 0.946 35 H 0.070 0.930 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.084 0.916 40 H 0.080 0.920 41 H 0.053 0.947 42 H 0.058 0.942 43 H 0.418 0.582 44 H 0.156 0.844 45 H 0.117 0.883 46 H 0.078 0.922 47 H 0.067 0.933 48 H 0.077 0.923 49 H 0.085 0.915 50 H 0.051 0.949 51 H 0.097 0.903 52 H 0.136 0.864 53 H 0.098 0.902 54 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.659 -36.191 4.233 36.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.622 5.622 2 C -0.269 4.269 3 Si 0.805 3.195 4 H -0.213 1.213 5 H -0.220 1.220 6 H -0.193 1.193 7 C -0.383 4.383 8 H 0.094 0.906 9 N -0.394 5.394 10 C 0.021 3.979 11 C -0.155 4.155 12 C -0.142 4.142 13 C -0.152 4.152 14 C -0.156 4.156 15 C -0.004 4.004 16 N -0.370 5.370 17 C 0.300 3.700 18 O -0.461 6.461 19 C -0.218 4.218 20 C 0.047 3.953 21 H 0.122 0.878 22 C -0.171 4.171 23 C -0.169 4.169 24 C -0.147 4.147 25 C -0.206 4.206 26 C 0.302 3.698 27 O -0.489 6.489 28 N -0.363 5.363 29 H 0.061 0.939 30 H 0.204 0.796 31 H 0.038 0.962 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.088 0.912 36 H 0.087 0.913 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.255 0.745 44 H 0.172 0.828 45 H 0.135 0.865 46 H 0.096 0.904 47 H 0.086 0.914 48 H 0.096 0.904 49 H 0.103 0.897 50 H 0.070 0.930 51 H 0.116 0.884 52 H 0.153 0.847 53 H 0.117 0.883 54 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 5.320 -36.462 4.096 37.075 hybrid contribution -0.313 0.916 -0.528 1.102 sum 5.007 -35.546 3.568 36.074 Atomic orbital electron populations 1.69824 1.06728 1.26173 1.59460 1.25630 0.96457 1.01308 1.03536 0.85091 0.77711 0.79138 0.77528 1.21268 1.22028 1.19273 1.19700 0.91601 0.85535 1.41445 0.90591 1.42673 1.05692 1.01569 1.89474 1.20887 0.94454 0.85071 0.97454 1.21645 0.98082 0.94467 1.01330 1.21421 0.97958 0.92069 1.02720 1.21455 0.98060 0.93376 1.02337 1.21691 0.97804 0.92059 1.04039 1.21313 0.95038 0.82555 1.01495 1.45927 1.11338 1.05120 1.74607 1.20878 0.87761 0.86330 0.75013 1.90718 1.15902 1.88111 1.51356 1.23043 1.00043 0.90524 1.08222 1.21123 0.96489 0.83597 0.94053 0.87792 1.21761 0.99275 1.02362 0.93682 1.21349 0.94447 1.00681 1.00442 1.21231 0.98699 0.99638 0.95161 1.22759 0.99917 1.04367 0.93521 1.21199 0.82425 0.83198 0.82964 1.90742 1.72084 1.31622 1.54480 1.46160 1.15181 1.32975 1.41973 0.93948 0.79595 0.96245 0.96334 0.92860 0.92730 0.91154 0.91346 0.92167 0.91917 0.89756 0.90159 0.92818 0.92316 0.74527 0.82768 0.86472 0.90357 0.91398 0.90413 0.89694 0.93036 0.88402 0.84690 0.88333 0.76112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.29 13.06 21.65 0.28 -60.00 16 2 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 3 Si 0.98 46.27 29.55 68.60 2.03 48.30 16 4 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 5 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.25 -14.35 9.99 84.03 0.84 -13.51 16 8 H 0.08 4.14 7.83 -2.91 -0.02 4.12 16 9 N -0.75 -39.39 5.60 -343.46 -1.92 -41.31 16 10 C 0.15 5.90 6.26 86.38 0.54 6.44 16 11 C -0.12 -3.60 5.33 30.59 0.16 -3.44 16 12 C -0.10 -2.16 5.21 30.59 0.16 -2.00 16 13 C -0.11 -1.86 5.21 30.60 0.16 -1.70 16 14 C -0.12 -1.22 5.33 30.59 0.16 -1.06 16 15 C 0.12 1.48 5.67 86.38 0.49 1.97 16 16 N -0.72 -5.80 5.56 -463.07 -2.57 -8.37 16 17 C 0.51 5.81 7.82 87.66 0.69 6.49 16 18 O -0.58 -11.84 15.39 -3.03 -0.05 -11.88 16 19 C -0.18 -0.87 3.28 29.85 0.10 -0.78 16 20 C 0.15 1.23 3.12 44.86 0.14 1.37 16 21 H 0.10 1.17 6.91 -2.39 -0.02 1.15 16 22 C -0.13 -0.95 5.56 30.20 0.17 -0.78 16 23 C -0.13 -0.50 5.19 29.80 0.15 -0.35 16 24 C -0.11 -0.50 5.67 30.22 0.17 -0.33 16 25 C -0.17 -1.04 5.52 30.10 0.17 -0.88 16 26 C 0.51 7.30 6.67 88.10 0.59 7.89 16 27 O -0.61 -14.97 17.92 -3.05 -0.05 -15.02 16 28 N -0.71 -7.34 5.09 -442.19 -2.25 -9.59 16 29 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 30 H 0.37 20.71 7.67 -92.71 -0.71 20.00 16 31 H 0.02 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 36 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 42 H 0.06 0.87 8.14 -2.39 -0.02 0.86 16 43 H 0.42 0.64 8.47 -92.71 -0.79 -0.15 16 44 H 0.16 0.03 2.73 -2.38 -0.01 0.03 16 45 H 0.12 0.33 7.45 -2.39 -0.02 0.31 16 46 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.07 0.57 8.05 -2.39 -0.02 0.55 16 48 H 0.08 0.26 8.14 -2.39 -0.02 0.24 16 49 H 0.08 0.10 5.56 -2.38 -0.01 0.09 16 50 H 0.05 0.43 7.86 -2.39 -0.02 0.41 16 51 H 0.10 0.14 8.14 -2.39 -0.02 0.12 16 52 H 0.14 0.10 3.64 -2.39 -0.01 0.09 16 53 H 0.10 0.66 8.13 -2.39 -0.02 0.64 16 54 H 0.40 4.10 8.91 -92.71 -0.83 3.27 16 Total: -1.00 -80.29 418.46 -0.79 -81.09 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: -1.41 Total: 21.50 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: 5.15 Total: -4.70 kcal Atomic # 7 Polarization: -112.82 SS G_CDS: -6.47 Total: -119.28 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.10 Total: -26.91 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -80.29 -0.79 -81.09 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180158331.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.231 kcal (2) G-P(sol) polarization free energy of solvation -80.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds