Wall clock time and date at job start Sat Apr 11 2020 05:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00152 * 2 1 4 4 H 1.48502 * 109.47274 * 270.28005 * 3 2 1 5 5 H 1.48505 * 109.47015 * 30.27569 * 3 2 1 6 6 H 1.48498 * 109.47362 * 150.27996 * 3 2 1 7 7 C 1.38815 * 119.99673 * 180.28090 * 2 1 3 8 8 H 1.08000 * 119.99641 * 359.71899 * 7 2 1 9 9 N 1.36931 * 119.99715 * 179.72262 * 7 2 1 10 10 C 1.46506 * 119.99939 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47233 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.46857 * 60.00507 * 11 10 9 13 13 C 1.54806 * 109.46759 * 179.97438 * 11 10 9 14 14 N 1.45123 * 109.53705 * 187.88994 * 13 11 10 15 15 C 1.34780 * 118.75889 * 90.70848 * 14 13 11 16 16 O 1.21283 * 119.99932 * 0.02562 * 15 14 13 17 17 C 1.50695 * 120.00297 * 180.02562 * 15 14 13 18 18 C 1.53001 * 109.47321 * 180.02562 * 17 15 14 19 19 C 1.53003 * 109.47197 * 179.97438 * 18 17 15 20 20 N 1.46898 * 109.46741 * 179.97438 * 19 18 17 21 21 C 1.48530 * 111.00499 * 52.60648 * 20 19 18 22 22 C 1.54939 * 103.23104 * 159.71655 * 21 20 19 23 23 C 1.54590 * 102.91840 * 322.58853 * 22 21 20 24 24 C 1.47900 * 110.99666 * 170.00228 * 20 19 18 25 25 C 1.47507 * 122.48506 * 270.71440 * 14 13 11 26 26 C 1.53567 * 111.03183 * 41.62302 * 25 14 13 27 27 C 1.51542 * 109.58088 * 39.97915 * 26 25 14 28 28 O 1.38013 * 109.47037 * 300.00712 * 11 10 9 29 29 H 0.97000 * 120.00043 * 359.72461 * 1 2 3 30 30 H 0.97000 * 120.00754 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.46853 * 300.00510 * 10 9 7 32 32 H 1.09006 * 109.46689 * 59.99917 * 10 9 7 33 33 H 1.08998 * 109.46331 * 307.91194 * 13 11 10 34 34 H 1.09003 * 109.45955 * 67.87282 * 13 11 10 35 35 H 1.09001 * 109.46840 * 299.99710 * 17 15 14 36 36 H 1.08999 * 109.47179 * 59.99792 * 17 15 14 37 37 H 1.09001 * 109.46799 * 299.99578 * 18 17 15 38 38 H 1.08999 * 109.47291 * 59.99704 * 18 17 15 39 39 H 1.08992 * 109.47055 * 299.99890 * 19 18 17 40 40 H 1.08999 * 109.47071 * 59.99778 * 19 18 17 41 41 H 1.09002 * 110.66196 * 278.15688 * 21 20 19 42 42 H 1.09004 * 110.66571 * 41.27975 * 21 20 19 43 43 H 1.09000 * 110.72022 * 204.22691 * 22 21 20 44 44 H 1.09003 * 110.87290 * 81.01783 * 22 21 20 45 45 H 1.09010 * 110.30450 * 263.03874 * 23 22 21 46 46 H 1.09000 * 110.39325 * 140.91648 * 23 22 21 47 47 H 1.08998 * 109.92040 * 333.50613 * 24 20 19 48 48 H 1.09001 * 109.92222 * 94.60141 * 24 20 19 49 49 H 1.09000 * 109.16370 * 281.22413 * 25 14 13 50 50 H 1.09002 * 109.12222 * 161.99586 * 25 14 13 51 51 H 1.08998 * 109.45525 * 279.95095 * 26 25 14 52 52 H 1.08998 * 109.43581 * 160.00240 * 26 25 14 53 53 H 1.08995 * 109.59164 * 148.81710 * 27 26 25 54 54 H 1.09001 * 109.58435 * 28.38328 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4918 2.0498 -1.4001 5 1 1.4506 2.6509 0.7059 6 1 3.5507 1.4384 0.6941 7 6 2.0102 -1.2022 -0.0059 8 1 1.4701 -2.1374 -0.0059 9 7 3.3795 -1.2022 -0.0116 10 6 4.1120 -2.4710 -0.0173 11 6 5.6162 -2.1914 -0.0237 12 1 5.8836 -1.6215 0.8662 13 6 6.3901 -3.5321 -0.0290 14 7 7.8069 -3.2755 0.1527 15 6 8.3074 -3.2578 1.4040 16 8 7.5771 -3.4547 2.3521 17 6 9.7744 -2.9934 1.6251 18 6 10.0788 -3.0288 3.1241 19 6 11.5685 -2.7611 3.3485 20 7 11.8605 -2.7945 4.7878 21 6 11.3603 -4.0502 5.4035 22 6 12.1837 -4.1562 6.7117 23 6 13.5755 -3.6343 6.2872 24 6 13.3189 -2.7783 5.0331 25 6 8.7198 -3.0330 -0.9802 26 6 8.0665 -2.1212 -2.0291 27 6 7.2839 -1.0259 -1.3331 28 8 5.9445 -1.4655 -1.1507 29 1 -0.4850 0.8400 0.0040 30 1 3.8646 -0.3622 -0.0120 31 1 3.8523 -3.0443 0.8726 32 1 3.8449 -3.0407 -0.9074 33 1 6.0285 -4.1635 0.7826 34 1 6.2321 -4.0389 -0.9811 35 1 10.3620 -3.7583 1.1173 36 1 10.0312 -2.0126 1.2249 37 1 9.4913 -2.2642 3.6323 38 1 9.8221 -4.0098 3.5239 39 1 12.1556 -3.5259 2.8404 40 1 11.8256 -1.7802 2.9486 41 1 10.2956 -3.9728 5.6242 42 1 11.5586 -4.9028 4.7539 43 1 12.2454 -5.1920 7.0457 44 1 11.7566 -3.5257 7.4916 45 1 14.2353 -4.4683 6.0475 46 1 14.0102 -3.0244 7.0792 47 1 13.8440 -3.2050 4.1786 48 1 13.6557 -1.7556 5.2027 49 1 8.9756 -3.9858 -1.4439 50 1 9.6293 -2.5592 -0.6109 51 1 7.3924 -2.7092 -2.6519 52 1 8.8401 -1.6741 -2.6533 53 1 7.2924 -0.1247 -1.9460 54 1 7.7343 -0.8150 -0.3631 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202135318.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:15 Heat of formation + Delta-G solvation = -84.157559 kcal Electronic energy + Delta-G solvation = -30445.558587 eV Core-core repulsion = 26416.665645 eV Total energy + Delta-G solvation = -4028.892942 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.70558 -40.07488 -39.61905 -37.03481 -36.30890 -35.44910 -34.34010 -33.01205 -32.12352 -30.53625 -29.80989 -28.34611 -27.08178 -26.27792 -24.28305 -23.31003 -22.76521 -22.35184 -21.72144 -21.28026 -19.89017 -19.82635 -18.43645 -17.76523 -17.58840 -17.27748 -16.94492 -16.74705 -16.51241 -16.37744 -15.76398 -15.57853 -15.16102 -15.02569 -14.87727 -14.74471 -14.47619 -14.09355 -13.97901 -13.90616 -13.70418 -13.56018 -13.31966 -13.21613 -12.86653 -12.84273 -12.55646 -12.42720 -12.33664 -12.25616 -12.16017 -12.08421 -12.00490 -11.97097 -11.84587 -11.63283 -11.49773 -11.42026 -11.04667 -10.85118 -10.59309 -9.66158 -9.36516 -9.33961 -8.05475 -5.38589 1.34146 1.37920 1.45392 1.56694 1.92225 2.45838 2.66739 3.01870 3.25665 3.42668 3.48359 3.72830 3.79024 3.84191 3.92858 3.99024 4.01727 4.02395 4.05029 4.15525 4.23236 4.28448 4.33006 4.35797 4.46430 4.49616 4.52546 4.59153 4.63724 4.67952 4.70150 4.72739 4.77397 4.84484 4.88564 4.90254 4.95768 5.04563 5.06049 5.10395 5.12102 5.19299 5.21947 5.27232 5.31983 5.52989 5.70512 5.94274 6.11658 6.17918 6.29149 6.69163 7.03629 7.13791 7.79397 8.00098 9.15882 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014187 B = 0.002239 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.102199 B =12501.319391 C =13376.632939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.063 4.063 3 Si 0.959 3.041 4 H -0.274 1.274 5 H -0.291 1.291 6 H -0.263 1.263 7 C -0.236 4.236 8 H 0.059 0.941 9 N -0.753 5.753 10 C 0.164 3.836 11 C 0.103 3.897 12 H 0.026 0.974 13 C 0.093 3.907 14 N -0.610 5.610 15 C 0.497 3.503 16 O -0.586 6.586 17 C -0.126 4.126 18 C -0.099 4.099 19 C 0.054 3.946 20 N -0.540 5.540 21 C 0.032 3.968 22 C -0.126 4.126 23 C -0.129 4.129 24 C 0.033 3.967 25 C 0.100 3.900 26 C -0.158 4.158 27 C 0.061 3.939 28 O -0.399 6.399 29 H 0.259 0.741 30 H 0.366 0.634 31 H 0.037 0.963 32 H 0.038 0.962 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.125 0.875 36 H 0.119 0.881 37 H 0.048 0.952 38 H 0.055 0.945 39 H 0.052 0.948 40 H 0.086 0.914 41 H 0.066 0.934 42 H 0.048 0.952 43 H 0.081 0.919 44 H 0.066 0.934 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.054 0.946 48 H 0.079 0.921 49 H 0.092 0.908 50 H 0.115 0.885 51 H 0.072 0.928 52 H 0.122 0.878 53 H 0.099 0.901 54 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 37.767 -8.768 2.098 38.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.255 4.255 3 Si 0.786 3.214 4 H -0.200 1.200 5 H -0.217 1.217 6 H -0.188 1.188 7 C -0.367 4.367 8 H 0.077 0.923 9 N -0.398 5.398 10 C 0.038 3.962 11 C 0.042 3.958 12 H 0.044 0.956 13 C -0.032 4.032 14 N -0.343 5.343 15 C 0.287 3.713 16 O -0.465 6.465 17 C -0.166 4.166 18 C -0.138 4.138 19 C -0.074 4.074 20 N -0.265 5.265 21 C -0.096 4.096 22 C -0.164 4.164 23 C -0.167 4.167 24 C -0.094 4.094 25 C -0.021 4.021 26 C -0.196 4.196 27 C -0.015 4.015 28 O -0.318 6.318 29 H 0.068 0.932 30 H 0.199 0.801 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.095 0.905 34 H 0.119 0.881 35 H 0.143 0.857 36 H 0.137 0.863 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.104 0.896 41 H 0.084 0.916 42 H 0.067 0.933 43 H 0.100 0.900 44 H 0.085 0.915 45 H 0.096 0.904 46 H 0.096 0.904 47 H 0.072 0.928 48 H 0.097 0.903 49 H 0.110 0.890 50 H 0.133 0.867 51 H 0.091 0.909 52 H 0.140 0.860 53 H 0.117 0.883 54 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 36.833 -8.492 2.642 37.891 hybrid contribution -0.144 0.281 0.009 0.316 sum 36.689 -8.212 2.651 37.690 Atomic orbital electron populations 1.69879 1.06902 1.26734 1.59611 1.25494 0.96212 1.01213 1.02578 0.85350 0.78161 0.79678 0.78207 1.20011 1.21720 1.18849 1.19067 0.82459 0.93738 1.41467 0.92271 1.42553 1.02537 1.03899 1.90847 1.20746 0.88305 0.88208 0.98977 1.21895 0.94020 0.92402 0.87451 0.95645 1.22048 0.80956 0.96546 1.03632 1.48108 1.08357 1.70433 1.07378 1.21619 0.92134 0.75473 0.82078 1.90726 1.62586 1.50755 1.42480 1.21704 0.90288 1.06211 0.98426 1.21293 0.95905 1.01901 0.94677 1.22285 0.94828 1.02277 0.88020 1.64763 1.12714 1.35742 1.13296 1.23220 0.99659 0.90879 0.95798 1.22501 0.95283 1.01825 0.96789 1.22408 0.97160 0.99654 0.97482 1.22926 0.87624 1.01009 0.97866 1.22369 0.92317 1.01258 0.86149 1.22442 1.01267 0.97393 0.98532 1.22477 0.81195 0.97834 0.99978 1.86342 1.30409 1.72226 1.42796 0.93208 0.80119 0.94498 0.94419 0.90510 0.88123 0.85653 0.86261 0.93339 0.92667 0.92996 0.89555 0.91552 0.93334 0.90006 0.91474 0.90428 0.90437 0.92806 0.90308 0.89011 0.86674 0.90942 0.86005 0.88310 0.93574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -65.34 13.97 21.65 0.30 -65.04 16 2 C -0.06 -3.96 5.50 84.86 0.47 -3.49 16 3 Si 0.96 48.77 27.73 68.60 1.90 50.67 16 4 H -0.27 -13.45 7.11 99.48 0.71 -12.74 16 5 H -0.29 -14.64 7.11 99.48 0.71 -13.94 16 6 H -0.26 -12.59 6.52 99.48 0.65 -11.94 16 7 C -0.24 -14.51 10.47 84.04 0.88 -13.63 16 8 H 0.06 3.91 8.06 -2.91 -0.02 3.89 16 9 N -0.75 -39.26 5.29 -343.44 -1.82 -41.07 16 10 C 0.16 7.03 5.95 86.38 0.51 7.55 16 11 C 0.10 3.54 2.73 31.21 0.09 3.63 16 12 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 13 C 0.09 2.51 4.86 87.25 0.42 2.93 16 14 N -0.61 -12.50 2.19 -817.96 -1.79 -14.29 16 15 C 0.50 11.57 7.63 87.65 0.67 12.24 16 16 O -0.59 -20.10 15.41 -3.04 -0.05 -20.15 16 17 C -0.13 -1.63 4.04 29.85 0.12 -1.51 16 18 C -0.10 -1.71 4.16 30.60 0.13 -1.59 16 19 C 0.05 0.68 5.03 86.30 0.43 1.12 16 20 N -0.54 -8.57 5.40 -883.03 -4.76 -13.33 16 21 C 0.03 0.50 5.10 86.65 0.44 0.94 16 22 C -0.13 -1.57 7.06 31.80 0.22 -1.34 16 23 C -0.13 -1.28 6.93 31.47 0.22 -1.07 16 24 C 0.03 0.39 6.69 86.45 0.58 0.96 16 25 C 0.10 1.05 6.00 86.38 0.52 1.57 16 26 C -0.16 -2.03 5.79 30.31 0.18 -1.86 16 27 C 0.06 1.30 6.37 71.50 0.46 1.76 16 28 O -0.40 -12.97 9.19 -117.84 -1.08 -14.05 16 29 H 0.26 16.34 8.31 -92.71 -0.77 15.57 16 30 H 0.37 18.66 5.39 -92.71 -0.50 18.16 16 31 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.04 1.59 8.14 -2.38 -0.02 1.58 16 33 H 0.08 2.35 7.27 -2.39 -0.02 2.33 16 34 H 0.10 2.36 8.11 -2.39 -0.02 2.34 16 35 H 0.13 0.81 8.04 -2.39 -0.02 0.79 16 36 H 0.12 0.98 7.41 -2.39 -0.02 0.96 16 37 H 0.05 1.14 8.10 -2.39 -0.02 1.12 16 38 H 0.05 1.13 6.75 -2.39 -0.02 1.11 16 39 H 0.05 0.50 7.81 -2.39 -0.02 0.48 16 40 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.07 1.27 7.66 -2.39 -0.02 1.25 16 42 H 0.05 0.70 8.00 -2.38 -0.02 0.68 16 43 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.08 0.59 8.14 -2.38 -0.02 0.57 16 46 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.05 0.50 7.57 -2.39 -0.02 0.49 16 48 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 49 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 50 H 0.12 0.52 5.87 -2.39 -0.01 0.50 16 51 H 0.07 1.15 8.01 -2.39 -0.02 1.13 16 52 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 53 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 54 H 0.05 0.99 7.40 -2.39 -0.02 0.97 16 Total: -1.00 -83.10 411.72 -0.66 -83.76 By element: Atomic # 1 Polarization: 24.99 SS G_CDS: 0.30 Total: 25.29 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 6.33 Total: 8.22 kcal Atomic # 7 Polarization: -125.66 SS G_CDS: -8.07 Total: -133.73 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -1.13 Total: -34.20 kcal Atomic # 14 Polarization: 48.77 SS G_CDS: 1.90 Total: 50.67 kcal Total: -83.10 -0.66 -83.76 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202135318.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.399 kcal (2) G-P(sol) polarization free energy of solvation -83.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds