Wall clock time and date at job start Sat Apr 11 2020 05:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 120.00003 * 2 1 4 4 H 1.48501 * 109.47314 * 269.99865 * 3 2 1 5 5 H 1.48497 * 109.47319 * 30.00061 * 3 2 1 6 6 H 1.48507 * 109.47416 * 150.00046 * 3 2 1 7 7 C 1.38816 * 120.00334 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00443 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99643 * 359.97438 * 7 2 1 10 10 C 1.46501 * 120.00201 * 180.02562 * 9 7 2 11 11 H 1.09008 * 109.52214 * 325.08150 * 10 9 7 12 12 C 1.53035 * 109.49852 * 85.15866 * 10 9 7 13 13 C 1.53042 * 109.54002 * 181.31874 * 12 10 9 14 14 C 1.53622 * 109.24339 * 298.51301 * 13 12 10 15 15 N 1.46925 * 108.54251 * 54.85358 * 14 13 12 16 16 C 1.34770 * 120.63211 * 126.37116 * 15 14 13 17 17 O 1.21286 * 120.00295 * 179.71713 * 16 15 14 18 18 C 1.50701 * 120.00009 * 359.72042 * 16 15 14 19 19 C 1.53007 * 109.47178 * 180.02562 * 18 16 15 20 20 C 1.53003 * 109.46869 * 179.97438 * 19 18 16 21 21 C 1.53000 * 109.46957 * 179.97438 * 20 19 18 22 22 N 1.46897 * 109.47026 * 179.97438 * 21 20 19 23 23 C 1.47016 * 110.99663 * 169.99881 * 22 21 20 24 24 C 1.53096 * 109.25743 * 177.60972 * 23 22 21 25 25 O 1.43023 * 109.25861 * 56.85106 * 24 23 22 26 26 C 1.43018 * 113.73594 * 301.32799 * 25 24 23 27 27 C 1.47014 * 110.99985 * 46.36898 * 22 21 20 28 28 C 1.46932 * 118.73816 * 306.09543 * 15 14 13 29 29 H 0.96996 * 119.99694 * 359.97438 * 1 2 3 30 30 H 0.97004 * 120.00190 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.46257 * 301.33610 * 12 10 9 32 32 H 1.09000 * 109.46164 * 61.31509 * 12 10 9 33 33 H 1.09007 * 109.49781 * 58.58531 * 13 12 10 34 34 H 1.09000 * 109.49860 * 178.68316 * 13 12 10 35 35 H 1.09001 * 109.73660 * 295.11739 * 14 13 12 36 36 H 1.09004 * 109.66922 * 174.54614 * 14 13 12 37 37 H 1.08994 * 109.47541 * 59.99801 * 18 16 15 38 38 H 1.09002 * 109.47109 * 299.99731 * 18 16 15 39 39 H 1.08993 * 109.47011 * 60.00158 * 19 18 16 40 40 H 1.09002 * 109.46719 * 299.99771 * 19 18 16 41 41 H 1.09000 * 109.47027 * 59.99581 * 20 19 18 42 42 H 1.08998 * 109.46778 * 299.99434 * 20 19 18 43 43 H 1.09005 * 109.46703 * 59.99893 * 21 20 19 44 44 H 1.09000 * 109.47321 * 300.00255 * 21 20 19 45 45 H 1.09001 * 109.50444 * 57.67894 * 23 22 21 46 46 H 1.08996 * 109.54324 * 297.56799 * 23 22 21 47 47 H 1.08999 * 109.51205 * 176.78862 * 24 23 22 48 48 H 1.09004 * 109.50767 * 296.91617 * 24 23 22 49 49 H 1.08997 * 109.51111 * 298.73945 * 26 25 24 50 50 H 1.08994 * 109.54192 * 178.62291 * 26 25 24 51 51 H 1.08995 * 109.50517 * 302.32655 * 27 22 21 52 52 H 1.09004 * 109.50827 * 62.45421 * 27 22 21 53 53 H 1.08998 * 109.58666 * 173.64743 * 28 15 14 54 54 H 1.09000 * 109.58513 * 293.92812 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0904 -1.2022 -0.0010 9 7 1.3257 -2.3880 -0.0005 10 6 2.0581 -3.6568 -0.0005 11 1 2.9699 -3.5511 -0.5886 12 6 2.4190 -4.0383 1.4369 13 6 3.2127 -5.3468 1.4353 14 6 2.3431 -6.4657 0.8423 15 7 1.8769 -6.0415 -0.4849 16 6 2.0794 -6.8211 -1.5654 17 8 1.6853 -6.4621 -2.6548 18 6 2.7956 -8.1391 -1.4201 19 6 2.8930 -8.8201 -2.7868 20 6 3.6206 -10.1579 -2.6392 21 6 3.7175 -10.8392 -4.0058 22 7 4.4166 -12.1233 -3.8642 23 6 4.3225 -12.9134 -5.1004 24 6 5.1126 -14.2137 -4.9301 25 8 4.6125 -14.9241 -3.7940 26 6 4.6896 -14.1842 -2.5726 27 6 3.8952 -12.8836 -2.7191 28 6 1.1804 -4.7539 -0.6108 29 1 -0.4849 0.8400 0.0004 30 1 0.3556 -2.3880 0.0002 31 1 3.0233 -3.2476 1.8817 32 1 1.5061 -4.1683 2.0182 33 1 4.1135 -5.2252 0.8337 34 1 3.4894 -5.6057 2.4573 35 1 1.4854 -6.6478 1.4899 36 1 2.9326 -7.3777 0.7482 37 1 2.2422 -8.7795 -0.7333 38 1 3.7980 -7.9667 -1.0282 39 1 3.4467 -8.1796 -3.4732 40 1 1.8907 -8.9925 -3.1790 41 1 3.0674 -10.7986 -1.9526 42 1 4.6229 -9.9850 -2.2472 43 1 4.2706 -10.1985 -4.6927 44 1 2.7151 -11.0120 -4.3975 45 1 4.7374 -12.3415 -5.9304 46 1 3.2777 -13.1466 -5.3054 47 1 4.9987 -14.8285 -5.8229 48 1 6.1669 -13.9818 -4.7792 49 1 5.7316 -13.9514 -2.3532 50 1 4.2702 -14.7772 -1.7599 51 1 3.9982 -12.2900 -1.8108 52 1 2.8434 -13.1164 -2.8853 53 1 1.0025 -4.5361 -1.6639 54 1 0.2286 -4.8001 -0.0815 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001210146704.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:37 Heat of formation + Delta-G solvation = -98.244747 kcal Electronic energy + Delta-G solvation = -29490.689261 eV Core-core repulsion = 25461.185453 eV Total energy + Delta-G solvation = -4029.503808 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.23569 -40.55785 -38.78916 -37.51353 -36.19951 -35.10926 -33.82919 -32.72873 -32.18461 -31.11931 -29.87651 -27.84944 -26.31623 -25.78905 -25.05874 -23.95584 -23.36703 -22.07897 -21.36997 -21.15064 -19.95183 -19.14064 -18.11855 -17.53052 -17.17194 -16.99543 -16.82049 -16.63711 -16.21974 -16.03217 -15.88451 -15.56931 -15.45120 -15.14621 -15.04786 -14.98577 -14.71531 -14.39232 -14.08052 -13.63789 -13.54940 -13.47054 -13.23075 -12.96432 -12.89339 -12.64041 -12.45416 -12.35263 -12.25833 -12.24142 -12.17716 -12.10229 -11.84141 -11.78570 -11.71049 -11.60671 -11.56599 -11.32064 -10.92959 -10.77538 -10.63218 -9.65098 -9.39552 -9.04745 -7.97682 -5.27356 1.44637 1.46994 1.54983 1.66224 1.99841 2.54573 2.74498 2.98658 3.35253 3.56867 3.76327 3.82533 3.94739 3.97609 4.01821 4.06860 4.09337 4.13873 4.20282 4.22440 4.30206 4.30408 4.36498 4.41053 4.43878 4.55814 4.60034 4.60714 4.70750 4.74893 4.78509 4.80182 4.82575 4.84151 4.89268 4.93615 4.96538 5.04490 5.05299 5.08841 5.18312 5.33451 5.40591 5.41592 5.44248 5.53786 5.59723 5.95623 5.97204 6.19363 6.23955 6.49824 7.21392 7.29686 8.02792 8.27030 9.25624 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.027588 B = 0.001606 C = 0.001570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.692097 B =17425.045709 C =17831.341485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.973 3.027 4 H -0.290 1.290 5 H -0.293 1.293 6 H -0.268 1.268 7 C -0.241 4.241 8 H 0.073 0.927 9 N -0.736 5.736 10 C 0.167 3.833 11 H 0.030 0.970 12 C -0.129 4.129 13 C -0.124 4.124 14 C 0.104 3.896 15 N -0.607 5.607 16 C 0.501 3.499 17 O -0.598 6.598 18 C -0.125 4.125 19 C -0.099 4.099 20 C -0.109 4.109 21 C 0.054 3.946 22 N -0.543 5.543 23 C 0.015 3.985 24 C 0.063 3.937 25 O -0.410 6.410 26 C 0.059 3.941 27 C 0.010 3.990 28 C 0.118 3.882 29 H 0.251 0.749 30 H 0.373 0.627 31 H 0.044 0.956 32 H 0.055 0.945 33 H 0.062 0.938 34 H 0.102 0.898 35 H 0.083 0.917 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.051 0.949 40 H 0.050 0.950 41 H 0.080 0.920 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.027 0.973 45 H 0.094 0.906 46 H 0.034 0.966 47 H 0.111 0.889 48 H 0.062 0.938 49 H 0.063 0.937 50 H 0.112 0.888 51 H 0.110 0.890 52 H 0.033 0.967 53 H 0.056 0.944 54 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.532 -32.270 -0.945 34.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.267 4.267 3 Si 0.802 3.198 4 H -0.217 1.217 5 H -0.219 1.219 6 H -0.193 1.193 7 C -0.373 4.373 8 H 0.091 0.909 9 N -0.376 5.376 10 C 0.058 3.942 11 H 0.048 0.952 12 C -0.169 4.169 13 C -0.163 4.163 14 C -0.017 4.017 15 N -0.340 5.340 16 C 0.291 3.709 17 O -0.479 6.479 18 C -0.164 4.164 19 C -0.138 4.138 20 C -0.146 4.146 21 C -0.073 4.073 22 N -0.269 5.269 23 C -0.113 4.113 24 C -0.014 4.014 25 O -0.329 6.329 26 C -0.017 4.017 27 C -0.117 4.117 28 C -0.007 4.007 29 H 0.060 0.940 30 H 0.204 0.796 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.121 0.879 35 H 0.101 0.899 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.139 0.861 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.099 0.901 42 H 0.102 0.898 43 H 0.092 0.908 44 H 0.045 0.955 45 H 0.112 0.888 46 H 0.052 0.948 47 H 0.129 0.871 48 H 0.081 0.919 49 H 0.081 0.919 50 H 0.130 0.870 51 H 0.128 0.872 52 H 0.052 0.948 53 H 0.075 0.925 54 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.906 -32.062 -1.432 34.231 hybrid contribution -1.269 1.895 -0.549 2.346 sum 10.636 -30.168 -1.981 32.049 Atomic orbital electron populations 1.69818 1.06600 1.26105 1.59361 1.25567 0.96403 1.01075 1.03608 0.85142 0.77808 0.79488 0.77333 1.21712 1.21949 1.19251 1.19557 0.91289 0.85098 1.41322 0.90880 1.42503 1.05439 1.00827 1.88879 1.20639 0.93569 0.84771 0.95231 0.95226 1.22077 0.99960 0.97552 0.97300 1.21976 0.98037 0.93551 1.02746 1.22209 0.99290 0.98556 0.81620 1.48276 1.57223 1.18897 1.09603 1.21715 0.78921 0.87419 0.82818 1.90684 1.53691 1.75373 1.28119 1.21742 1.02722 0.91402 1.00579 1.21221 1.00605 0.96094 0.95842 1.21637 1.01784 0.94764 0.96426 1.22154 0.96220 0.90145 0.98790 1.62342 1.56169 1.04249 1.04116 1.22832 0.99502 0.95700 0.93299 1.22766 0.97298 0.91965 0.89354 1.87958 1.84754 1.42691 1.17460 1.22841 1.00379 0.91785 0.86741 1.22971 0.97021 0.95842 0.95905 1.21521 0.95126 0.83243 1.00782 0.93974 0.79552 0.93726 0.92644 0.91885 0.87937 0.89912 0.85624 0.85784 0.86080 0.93026 0.93080 0.90110 0.89826 0.90779 0.95466 0.88818 0.94802 0.87130 0.91927 0.91907 0.86955 0.87243 0.94839 0.92513 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.10 13.06 21.65 0.28 -59.82 16 2 C -0.07 -4.33 5.50 84.86 0.47 -3.86 16 3 Si 0.97 46.79 29.55 68.60 2.03 48.82 16 4 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 5 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 7 C -0.24 -13.66 9.93 84.04 0.83 -12.82 16 8 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 9 N -0.74 -38.14 5.12 -322.57 -1.65 -39.79 16 10 C 0.17 6.79 2.92 45.07 0.13 6.92 16 11 H 0.03 1.31 8.08 -2.38 -0.02 1.29 16 12 C -0.13 -4.20 5.46 30.62 0.17 -4.03 16 13 C -0.12 -2.59 6.10 30.82 0.19 -2.40 16 14 C 0.10 1.80 6.37 86.51 0.55 2.35 16 15 N -0.61 -16.47 2.97 -818.06 -2.43 -18.90 16 16 C 0.50 13.84 7.70 87.66 0.67 14.52 16 17 O -0.60 -22.99 15.40 -3.05 -0.05 -23.04 16 18 C -0.13 -1.88 4.05 29.85 0.12 -1.76 16 19 C -0.10 -1.67 4.50 30.60 0.14 -1.53 16 20 C -0.11 -1.21 4.48 30.60 0.14 -1.07 16 21 C 0.05 0.75 5.28 86.30 0.46 1.21 16 22 N -0.54 -7.28 4.88 -895.22 -4.37 -11.65 16 23 C 0.01 0.19 5.62 86.31 0.49 0.67 16 24 C 0.06 0.74 7.01 72.01 0.50 1.24 16 25 O -0.41 -6.39 10.83 -148.98 -1.61 -8.00 16 26 C 0.06 0.65 7.01 72.02 0.50 1.15 16 27 C 0.01 0.12 4.94 86.31 0.43 0.54 16 28 C 0.12 4.30 5.90 86.36 0.51 4.81 16 29 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 30 H 0.37 20.67 7.80 -92.70 -0.72 19.95 16 31 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 34 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.13 1.10 5.93 -2.39 -0.01 1.09 16 37 H 0.12 1.11 7.93 -2.39 -0.02 1.09 16 38 H 0.12 1.23 7.70 -2.39 -0.02 1.21 16 39 H 0.05 1.09 8.10 -2.39 -0.02 1.07 16 40 H 0.05 1.05 8.10 -2.39 -0.02 1.03 16 41 H 0.08 0.68 6.28 -2.39 -0.01 0.67 16 42 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 44 H 0.03 0.42 8.08 -2.39 -0.02 0.40 16 45 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 47 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 49 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 50 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 51 H 0.11 0.84 6.05 -2.39 -0.01 0.82 16 52 H 0.03 0.44 8.14 -2.38 -0.02 0.42 16 53 H 0.06 2.46 7.01 -2.39 -0.02 2.44 16 54 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -76.97 415.22 -1.36 -78.33 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: 0.14 Total: 28.12 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: 6.30 Total: 5.93 kcal Atomic # 7 Polarization: -122.00 SS G_CDS: -8.16 Total: -130.16 kcal Atomic # 8 Polarization: -29.39 SS G_CDS: -1.66 Total: -31.05 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.82 kcal Total: -76.97 -1.36 -78.33 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001210146704.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.913 kcal (2) G-P(sol) polarization free energy of solvation -76.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds