Wall clock time and date at job start Sat Apr 11 2020 05:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 113.99829 * 2 1 4 4 H 1.09003 * 109.46131 * 29.97281 * 3 2 1 5 5 C 1.53035 * 109.46039 * 269.99734 * 3 2 1 6 6 C 1.53193 * 109.31679 * 178.62806 * 5 3 2 7 7 N 1.46925 * 108.77322 * 54.63468 * 6 5 3 8 8 C 1.34778 * 120.63485 * 126.37157 * 7 6 5 9 9 O 1.21586 * 120.00516 * 185.76816 * 8 7 6 10 10 N 1.34778 * 119.99528 * 5.76039 * 8 7 6 11 11 C 1.46503 * 119.99756 * 175.08225 * 10 8 7 12 12 C 1.53034 * 109.46208 * 84.97627 * 11 10 8 13 13 C 1.53161 * 109.32800 * 181.38451 * 12 11 10 14 14 N 1.46918 * 108.76857 * 305.35259 * 13 12 11 15 15 C 1.36939 * 120.63105 * 233.59166 * 14 13 12 16 16 H 1.07992 * 120.00422 * 35.72519 * 15 14 13 17 17 C 1.38819 * 119.99599 * 215.72561 * 15 14 13 18 18 N 1.31621 * 120.00125 * 356.41944 * 17 15 14 19 19 Si 1.86800 * 119.99693 * 176.41251 * 17 15 14 20 20 H 1.48500 * 109.47099 * 60.00577 * 19 17 15 21 21 H 1.48507 * 109.46955 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47558 * 300.00363 * 19 17 15 23 23 C 1.46928 * 118.73821 * 53.60847 * 14 13 12 24 24 C 1.53042 * 109.45776 * 205.02901 * 11 10 8 25 25 C 1.46933 * 118.73768 * 306.64463 * 7 6 5 26 26 C 1.52763 * 109.00676 * 53.31160 * 25 7 6 27 27 C 1.53001 * 109.56128 * 185.54816 * 26 25 7 28 28 C 1.52996 * 109.38806 * 65.51549 * 26 25 7 29 29 H 1.09003 * 109.47064 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47296 * 300.00446 * 1 2 3 31 31 H 1.09003 * 109.47015 * 60.00399 * 1 2 3 32 32 H 1.09003 * 109.49836 * 58.67803 * 5 3 2 33 33 H 1.09006 * 109.52555 * 298.59608 * 5 3 2 34 34 H 1.09001 * 109.58751 * 294.85477 * 6 5 3 35 35 H 1.08996 * 109.59026 * 174.41661 * 6 5 3 36 36 H 0.97004 * 119.99784 * 355.08096 * 10 8 7 37 37 H 1.08997 * 109.46163 * 324.99598 * 11 10 8 38 38 H 1.09005 * 109.49767 * 301.31994 * 12 11 10 39 39 H 1.09000 * 109.49776 * 61.41433 * 12 11 10 40 40 H 1.09008 * 109.59042 * 185.56655 * 13 12 11 41 41 H 1.09002 * 109.70636 * 65.21114 * 13 12 11 42 42 H 0.97002 * 119.99676 * 179.97438 * 18 17 15 43 43 H 1.09000 * 109.58673 * 186.60169 * 23 14 13 44 44 H 1.08996 * 109.70248 * 66.25042 * 23 14 13 45 45 H 1.08998 * 109.49533 * 298.57898 * 24 11 10 46 46 H 1.09003 * 109.50123 * 58.67449 * 24 11 10 47 47 H 1.09003 * 109.58303 * 173.13928 * 25 7 6 48 48 H 1.08999 * 109.58746 * 293.56889 * 25 7 6 49 49 H 1.08999 * 109.46590 * 179.97438 * 27 26 25 50 50 H 1.08996 * 109.47867 * 299.96620 * 27 26 25 51 51 H 1.09000 * 109.46957 * 59.96814 * 27 26 25 52 52 H 1.09004 * 109.47147 * 300.14443 * 28 26 25 53 53 H 1.09004 * 109.47570 * 60.14092 * 28 26 25 54 54 H 1.09005 * 109.47246 * 180.14191 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3445 1.9994 0.5135 5 6 2.2176 1.7712 -1.4429 6 6 2.8089 3.1845 -1.4392 7 7 4.0311 3.1835 -0.6239 8 6 5.1932 3.6440 -1.1278 9 8 6.2187 3.5419 -0.4825 10 7 5.2186 4.2176 -2.3472 11 6 6.4583 4.8146 -2.8501 12 6 7.3181 3.7301 -3.5032 13 6 8.6283 4.3509 -3.9971 14 7 8.3122 5.4825 -4.8792 15 6 8.8401 5.5524 -6.1408 16 1 8.9805 4.6506 -6.7181 17 6 9.1947 6.7825 -6.6776 18 7 8.9588 7.8876 -6.0028 19 14 10.0070 6.8691 -8.3575 20 1 9.1008 6.2810 -9.3764 21 1 10.2843 8.2871 -8.7007 22 1 11.2820 6.1083 -8.3308 23 6 7.4192 6.5380 -4.3818 24 6 6.1225 5.8924 -3.8834 25 6 3.9638 2.6653 0.7494 26 6 3.3584 1.2630 0.7229 27 6 3.1544 0.7660 2.1555 28 6 4.3047 0.3151 -0.0165 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.2602 1.7788 -1.9640 33 1 2.9025 1.0917 -1.9502 34 1 2.0867 3.8816 -1.0142 35 1 3.0506 3.4821 -2.4595 36 1 4.4160 4.2351 -2.8917 37 1 7.0071 5.2637 -2.0223 38 1 7.5376 2.9511 -2.7731 39 1 6.7797 3.2977 -4.3465 40 1 9.2005 3.6056 -4.5496 41 1 9.2120 4.7026 -3.1463 42 1 9.2070 8.7471 -6.3778 43 1 7.1937 7.2358 -5.1882 44 1 7.9009 7.0706 -3.5618 45 1 5.5954 5.4397 -4.7232 46 1 5.4908 6.6527 -3.4240 47 1 4.9674 2.6206 1.1726 48 1 3.3378 3.3192 1.3565 49 1 2.7220 -0.2343 2.1348 50 1 4.1148 0.7359 2.6700 51 1 2.4810 1.4422 2.6822 52 1 4.4508 0.6703 -1.0366 53 1 5.2649 0.2852 0.4987 54 1 3.8728 -0.6855 -0.0384 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226859827.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:49 Heat of formation + Delta-G solvation = -72.164821 kcal Electronic energy + Delta-G solvation = -31548.479116 eV Core-core repulsion = 27520.106218 eV Total energy + Delta-G solvation = -4028.372898 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.84303 -40.27901 -38.97952 -37.44659 -36.06377 -35.26392 -33.73721 -32.44760 -31.73066 -31.06695 -28.25959 -27.94965 -27.75089 -26.68517 -25.44898 -23.87403 -23.52364 -23.31478 -21.21994 -20.96715 -19.70824 -19.31922 -18.52932 -17.54509 -17.34952 -16.87053 -16.67804 -16.44200 -16.00879 -15.77269 -15.49243 -15.32218 -15.27940 -14.94496 -14.73433 -14.58085 -14.34404 -14.22548 -14.04075 -13.80310 -13.43032 -13.24631 -13.02793 -12.82112 -12.74919 -12.73020 -12.70005 -12.61414 -12.47726 -12.16718 -12.11595 -12.01513 -11.90889 -11.85660 -11.74016 -11.57710 -11.37109 -11.27158 -11.09777 -10.52792 -10.37501 -10.12448 -9.48199 -8.56928 -7.86515 -5.42874 1.48301 1.50940 1.57332 1.61875 2.14633 2.50774 2.83743 2.92326 3.30180 3.60209 3.67773 3.70081 3.87488 3.91948 4.02398 4.08789 4.19840 4.29535 4.31361 4.35579 4.47634 4.49078 4.56655 4.61093 4.65169 4.67196 4.70241 4.76081 4.82834 4.85269 4.88422 4.91308 4.94390 4.95044 5.02879 5.04911 5.08359 5.16223 5.18138 5.22229 5.30586 5.37580 5.40434 5.52670 5.57128 5.63212 5.65063 5.79723 5.96031 6.33848 6.46674 6.99548 7.18498 7.59280 7.83914 8.39990 9.18092 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.026203 B = 0.002258 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.329524 B =12398.039909 C =12630.748329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.105 3.895 4 H 0.080 0.920 5 C -0.155 4.155 6 C 0.111 3.889 7 N -0.625 5.625 8 C 0.703 3.297 9 O -0.633 6.633 10 N -0.728 5.728 11 C 0.182 3.818 12 C -0.123 4.123 13 C 0.146 3.854 14 N -0.611 5.611 15 C -0.267 4.267 16 H 0.064 0.936 17 C -0.043 4.043 18 N -0.933 5.933 19 Si 0.970 3.030 20 H -0.273 1.273 21 H -0.293 1.293 22 H -0.279 1.279 23 C 0.176 3.824 24 C -0.128 4.128 25 C 0.139 3.861 26 C -0.072 4.072 27 C -0.132 4.132 28 C -0.127 4.127 29 H 0.090 0.910 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.097 0.903 33 H 0.061 0.939 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.406 0.594 37 H 0.054 0.946 38 H 0.054 0.946 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.007 0.993 42 H 0.252 0.748 43 H 0.075 0.925 44 H -0.008 1.008 45 H 0.067 0.933 46 H 0.075 0.925 47 H 0.074 0.926 48 H 0.086 0.914 49 H 0.064 0.936 50 H 0.055 0.945 51 H 0.069 0.931 52 H 0.040 0.960 53 H 0.040 0.960 54 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.616 -13.225 13.563 29.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C 0.047 3.953 4 H 0.098 0.902 5 C -0.194 4.194 6 C -0.012 4.012 7 N -0.362 5.362 8 C 0.404 3.596 9 O -0.514 6.514 10 N -0.385 5.385 11 C 0.077 3.923 12 C -0.163 4.163 13 C 0.020 3.980 14 N -0.335 5.335 15 C -0.398 4.398 16 H 0.082 0.918 17 C -0.239 4.239 18 N -0.578 5.578 19 Si 0.798 3.202 20 H -0.199 1.199 21 H -0.219 1.219 22 H -0.205 1.205 23 C 0.050 3.950 24 C -0.168 4.168 25 C 0.016 3.984 26 C -0.073 4.073 27 C -0.190 4.190 28 C -0.184 4.184 29 H 0.109 0.891 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.115 0.885 33 H 0.080 0.920 34 H 0.113 0.887 35 H 0.106 0.894 36 H 0.244 0.756 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.025 0.975 42 H 0.061 0.939 43 H 0.093 0.907 44 H 0.010 0.990 45 H 0.085 0.915 46 H 0.094 0.906 47 H 0.092 0.908 48 H 0.104 0.896 49 H 0.083 0.917 50 H 0.074 0.926 51 H 0.088 0.912 52 H 0.059 0.941 53 H 0.059 0.941 54 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -21.739 -13.271 13.972 29.051 hybrid contribution 0.467 0.449 -1.125 1.298 sum -21.272 -12.821 12.848 27.964 Atomic orbital electron populations 1.22944 0.79944 1.03469 1.00789 1.87912 1.20852 1.27820 1.95060 1.22042 0.93581 0.84884 0.94748 0.90246 1.22448 1.02529 0.96287 0.98101 1.21817 0.85858 0.97553 0.95931 1.47291 1.07797 1.65800 1.15298 1.16041 0.83612 0.78322 0.81576 1.90880 1.33650 1.64722 1.62128 1.45350 1.14302 1.61811 1.17029 1.20489 0.84035 0.92727 0.95051 1.22164 0.97264 0.97652 0.99227 1.20952 0.94420 0.90064 0.92561 1.44255 1.53533 1.23313 1.12371 1.19419 1.35382 0.93052 0.91904 0.91790 1.26082 0.99461 0.95812 1.02534 1.70062 1.50701 0.97427 1.39630 0.85313 0.78957 0.76278 0.79665 1.19889 1.21860 1.20547 1.20702 0.87360 0.90357 0.96602 1.22289 0.99510 0.97430 0.97525 1.21523 1.02146 0.93251 0.81490 1.20916 0.94474 0.94738 0.97145 1.21702 1.02056 1.01946 0.93251 1.21694 0.98063 0.99240 0.99387 0.89144 0.93065 0.93243 0.88501 0.91985 0.88706 0.89360 0.75591 0.92793 0.92727 0.91963 0.92566 0.97480 0.93872 0.90666 0.99003 0.91459 0.90629 0.90772 0.89588 0.91688 0.92614 0.91220 0.94083 0.94097 0.92118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 10.82 113.37 1.23 1.44 16 2 O -0.40 -5.89 9.00 -148.98 -1.34 -7.23 16 3 C 0.11 1.39 1.71 30.62 0.05 1.44 16 4 H 0.08 0.78 7.79 -2.39 -0.02 0.76 16 5 C -0.16 -2.01 5.35 30.67 0.16 -1.84 16 6 C 0.11 1.51 6.39 86.36 0.55 2.06 16 7 N -0.63 -13.41 2.42 -837.72 -2.03 -15.44 16 8 C 0.70 21.36 8.25 179.05 1.48 22.84 16 9 O -0.63 -25.16 15.43 -3.99 -0.06 -25.22 16 10 N -0.73 -20.57 4.99 -457.69 -2.28 -22.85 16 11 C 0.18 6.52 2.38 45.02 0.11 6.63 16 12 C -0.12 -4.67 5.65 30.66 0.17 -4.49 16 13 C 0.15 6.59 6.51 86.35 0.56 7.16 16 14 N -0.61 -31.48 3.00 -699.17 -2.10 -33.57 16 15 C -0.27 -14.83 9.55 84.03 0.80 -14.02 16 16 H 0.06 3.46 7.83 -2.91 -0.02 3.43 16 17 C -0.04 -2.41 5.31 84.86 0.45 -1.96 16 18 N -0.93 -54.65 10.66 21.65 0.23 -54.42 16 19 Si 0.97 44.62 29.55 68.60 2.03 46.65 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 23 C 0.18 8.56 5.25 86.36 0.45 9.01 16 24 C -0.13 -4.67 5.55 30.67 0.17 -4.50 16 25 C 0.14 2.70 5.08 86.22 0.44 3.14 16 26 C -0.07 -1.18 0.60 -52.25 -0.03 -1.21 16 27 C -0.13 -1.81 8.32 71.98 0.60 -1.21 16 28 C -0.13 -2.69 7.84 71.98 0.56 -2.13 16 29 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.05 0.33 8.08 -2.39 -0.02 0.31 16 31 H 0.05 0.34 7.85 -2.39 -0.02 0.32 16 32 H 0.10 0.87 7.85 -2.39 -0.02 0.85 16 33 H 0.06 1.09 6.34 -2.38 -0.02 1.07 16 34 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.09 1.10 5.66 -2.39 -0.01 1.09 16 36 H 0.41 8.81 6.10 -92.71 -0.57 8.25 16 37 H 0.05 2.24 7.65 -2.39 -0.02 2.22 16 38 H 0.05 2.09 8.09 -2.38 -0.02 2.08 16 39 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.06 2.46 7.93 -2.38 -0.02 2.45 16 41 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 42 H 0.25 14.29 8.31 -92.71 -0.77 13.51 16 43 H 0.08 4.08 5.96 -2.39 -0.01 4.07 16 44 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 45 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 46 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 47 H 0.07 1.87 7.00 -2.39 -0.02 1.86 16 48 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 49 H 0.06 0.94 7.65 -2.39 -0.02 0.92 16 50 H 0.05 0.80 8.14 -2.39 -0.02 0.79 16 51 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 52 H 0.04 0.99 5.98 -2.38 -0.01 0.98 16 53 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 54 H 0.06 1.26 7.72 -2.38 -0.02 1.24 16 Total: -1.00 -70.79 404.29 2.52 -68.27 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: 0.31 Total: 21.47 kcal Atomic # 6 Polarization: 14.58 SS G_CDS: 7.76 Total: 22.34 kcal Atomic # 7 Polarization: -120.11 SS G_CDS: -6.17 Total: -126.29 kcal Atomic # 8 Polarization: -31.04 SS G_CDS: -1.40 Total: -32.45 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -70.79 2.52 -68.27 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226859827.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.891 kcal (2) G-P(sol) polarization free energy of solvation -70.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds