Wall clock time and date at job start Sat Apr 11 2020 05:49:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45209 * 109.47237 * 2 1 4 4 C 1.34227 * 116.99860 * 179.97438 * 3 2 1 5 5 O 1.20817 * 120.00236 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99619 * 180.02562 * 4 3 2 7 7 C 1.52995 * 109.47019 * 180.02562 * 6 4 3 8 8 C 1.53008 * 109.47355 * 179.97438 * 7 6 4 9 9 C 1.53004 * 109.47087 * 59.99577 * 8 7 6 10 10 O 1.42900 * 109.47204 * 180.02562 * 9 8 7 11 11 C 1.53000 * 109.46718 * 60.00267 * 9 8 7 12 12 N 1.46908 * 109.46834 * 185.00111 * 11 9 8 13 13 C 1.46900 * 110.99719 * 180.02562 * 12 11 9 14 14 H 1.08998 * 109.41541 * 324.85059 * 13 12 11 15 15 C 1.52954 * 109.41909 * 84.64691 * 13 12 11 16 16 C 1.53654 * 109.32943 * 183.83280 * 15 13 12 17 17 C 1.51277 * 108.31073 * 305.13833 * 16 15 13 18 18 C 1.37874 * 120.85039 * 231.38468 * 17 16 15 19 19 N 1.31516 * 120.00195 * 5.23256 * 18 17 16 20 20 Si 1.86806 * 120.00012 * 185.23796 * 18 17 16 21 21 H 1.48501 * 109.47006 * 179.97438 * 20 18 17 22 22 H 1.48497 * 109.46730 * 59.99579 * 20 18 17 23 23 H 1.48501 * 109.46733 * 299.99622 * 20 18 17 24 24 C 1.51269 * 118.29940 * 51.64961 * 17 16 15 25 25 C 1.52958 * 109.40979 * 204.99870 * 13 12 11 26 26 C 1.52996 * 109.47009 * 300.00305 * 9 8 7 27 27 C 1.53004 * 109.47257 * 59.99926 * 6 4 3 28 28 H 1.09000 * 109.46961 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47139 * 300.00091 * 1 2 3 30 30 H 1.08998 * 109.46863 * 60.00120 * 1 2 3 31 31 H 1.08998 * 109.47598 * 239.99782 * 2 1 3 32 32 H 1.08998 * 109.46863 * 119.99880 * 2 1 3 33 33 H 1.09006 * 109.47488 * 299.99987 * 6 4 3 34 34 H 1.08998 * 109.47773 * 59.99679 * 7 6 4 35 35 H 1.09000 * 109.46997 * 299.99783 * 7 6 4 36 36 H 1.09000 * 109.46893 * 299.99850 * 8 7 6 37 37 H 1.08993 * 109.47186 * 179.97438 * 8 7 6 38 38 H 0.96697 * 113.99725 * 180.02562 * 10 9 8 39 39 H 1.09002 * 109.47415 * 65.00203 * 11 9 8 40 40 H 1.08996 * 109.47445 * 304.99736 * 11 9 8 41 41 H 1.00898 * 110.99783 * 303.94899 * 12 11 9 42 42 H 1.09004 * 109.48176 * 303.68217 * 15 13 12 43 43 H 1.09003 * 109.48311 * 63.71465 * 15 13 12 44 44 H 1.09003 * 109.69581 * 185.52120 * 16 15 13 45 45 H 1.09001 * 109.78905 * 64.80672 * 16 15 13 46 46 H 0.96998 * 119.99593 * 354.58688 * 19 18 17 47 47 H 1.09001 * 109.62180 * 68.11801 * 24 17 16 48 48 H 1.08997 * 109.62793 * 188.49621 * 24 17 16 49 49 H 1.09006 * 109.48477 * 56.31104 * 25 13 12 50 50 H 1.09004 * 109.49320 * 296.28230 * 25 13 12 51 51 H 1.09007 * 109.47227 * 179.97438 * 26 9 8 52 52 H 1.08993 * 109.47374 * 299.99522 * 26 9 8 53 53 H 1.08993 * 109.47376 * 299.99904 * 27 6 4 54 54 H 1.09000 * 109.47032 * 60.00049 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9207 2.9374 0.0012 7 6 5.4486 2.8574 0.0010 8 6 6.0334 4.2712 0.0010 9 6 5.5619 5.0182 1.2503 10 8 6.1077 6.3389 1.2500 11 6 6.0335 4.2712 2.4995 12 7 5.4810 4.9203 3.6959 13 6 5.9143 4.2289 4.9175 14 1 5.9790 3.1581 4.7241 15 6 7.2887 4.7522 5.3378 16 6 7.7824 3.9612 6.5591 17 6 6.7266 4.0466 7.6391 18 6 7.0555 4.4361 8.9201 19 7 8.2781 4.8376 9.1919 20 14 5.7648 4.3932 10.2699 21 1 6.3672 4.8565 11.5457 22 1 5.2662 3.0041 10.4340 23 1 4.6352 5.2846 9.9029 24 6 5.3018 3.6880 7.2792 25 6 4.8992 4.4835 6.0330 26 6 4.0340 5.0983 1.2503 27 6 3.4487 3.6840 1.2505 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.5851 3.4699 -0.8888 34 1 5.7846 2.3256 -0.8891 35 1 5.7845 2.3248 0.8908 36 1 5.6975 4.8034 -0.8890 37 1 7.1219 4.2142 0.0014 38 1 5.8501 6.8710 2.0152 39 1 7.1224 4.2912 2.5454 40 1 5.6906 3.2375 2.4559 41 1 5.7316 5.8972 3.7256 42 1 7.9929 4.6257 4.5154 43 1 7.2129 5.8093 5.5923 44 1 8.7147 4.3924 6.9236 45 1 7.9410 2.9185 6.2839 46 1 8.9679 4.7858 8.5120 47 1 5.2349 2.6205 7.0694 48 1 4.6402 3.9404 8.1078 49 1 3.9096 4.1667 5.7034 50 1 4.8797 5.5470 6.2712 51 1 3.6980 5.6301 2.1406 52 1 3.6981 5.6304 0.3604 53 1 2.3602 3.7411 1.2501 54 1 3.7843 3.1517 2.1404 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001251073260.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:06 Heat of formation + Delta-G solvation = -193.399502 kcal Electronic energy + Delta-G solvation = -31390.138338 eV Core-core repulsion = 27324.215559 eV Total energy + Delta-G solvation = -4065.922779 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.224 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.93292 -40.67115 -39.05434 -37.82645 -36.57159 -35.69144 -33.38245 -32.76323 -31.84665 -31.50375 -31.00018 -28.64766 -26.06131 -24.90623 -23.93020 -23.64719 -23.46125 -22.84290 -21.71469 -21.17721 -19.83292 -18.71495 -18.59725 -18.02562 -17.61174 -17.53214 -17.06220 -16.44998 -16.12218 -15.63135 -15.41413 -15.06940 -14.88767 -14.73797 -14.62703 -14.50816 -14.17270 -14.03444 -13.85799 -13.69658 -13.50283 -13.37873 -13.16092 -12.94952 -12.91456 -12.78804 -12.64176 -12.54078 -12.42069 -12.34861 -12.11840 -11.99508 -11.95953 -11.82980 -11.77416 -11.53933 -11.39089 -11.30453 -11.23256 -10.87232 -10.64156 -10.59350 -10.28976 -9.29138 -8.59186 -6.16886 1.12136 1.50777 1.57196 1.65548 1.76546 2.54912 3.04126 3.14003 3.23114 3.56439 3.67812 3.73005 3.93297 3.97484 4.00137 4.01111 4.06824 4.17715 4.21087 4.27931 4.33919 4.37063 4.40606 4.48398 4.55575 4.64067 4.70525 4.79991 4.83740 4.88294 4.91441 4.92668 4.95177 4.97463 5.03408 5.06910 5.10240 5.14067 5.18284 5.21509 5.25342 5.27915 5.30847 5.38588 5.45619 5.47687 5.49481 5.72101 6.04034 6.05983 6.24159 6.45732 6.68495 6.74045 6.78947 7.53479 8.77790 Molecular weight = 339.22amu Principal moments of inertia in cm(-1) A = 0.012154 B = 0.002845 C = 0.002488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2303.159535 B = 9838.834387 C =11249.276089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.052 3.948 3 O -0.358 6.358 4 C 0.466 3.534 5 O -0.542 6.542 6 C -0.075 4.075 7 C -0.100 4.100 8 C -0.099 4.099 9 C 0.140 3.860 10 O -0.571 6.571 11 C 0.031 3.969 12 N -0.668 5.668 13 C 0.115 3.885 14 H 0.051 0.949 15 C -0.119 4.119 16 C -0.003 4.003 17 C -0.572 4.572 18 C -0.021 4.021 19 N -0.946 5.946 20 Si 1.098 2.902 21 H -0.296 1.296 22 H -0.269 1.269 23 H -0.262 1.262 24 C -0.013 4.013 25 C -0.084 4.084 26 C -0.121 4.121 27 C -0.101 4.101 28 H 0.097 0.903 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.136 0.864 34 H 0.080 0.920 35 H 0.057 0.943 36 H 0.091 0.909 37 H 0.068 0.932 38 H 0.385 0.615 39 H 0.018 0.982 40 H 0.076 0.924 41 H 0.338 0.662 42 H 0.036 0.964 43 H 0.043 0.957 44 H 0.009 0.991 45 H -0.005 1.005 46 H 0.257 0.743 47 H 0.009 0.991 48 H 0.033 0.967 49 H 0.061 0.939 50 H 0.045 0.955 51 H 0.083 0.917 52 H 0.083 0.917 53 H 0.087 0.913 54 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.766 -2.397 -22.954 27.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.022 4.022 3 O -0.274 6.274 4 C 0.311 3.689 5 O -0.432 6.432 6 C -0.094 4.094 7 C -0.137 4.137 8 C -0.137 4.137 9 C 0.099 3.901 10 O -0.379 6.379 11 C -0.099 4.099 12 N -0.298 5.298 13 C 0.005 3.995 14 H 0.070 0.930 15 C -0.158 4.158 16 C -0.042 4.042 17 C -0.592 4.592 18 C -0.219 4.219 19 N -0.586 5.586 20 Si 0.922 3.078 21 H -0.223 1.223 22 H -0.195 1.195 23 H -0.187 1.187 24 C -0.051 4.051 25 C -0.122 4.122 26 C -0.159 4.159 27 C -0.138 4.138 28 H 0.116 0.884 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.154 0.846 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.110 0.890 37 H 0.086 0.914 38 H 0.235 0.765 39 H 0.037 0.963 40 H 0.094 0.906 41 H 0.157 0.843 42 H 0.054 0.946 43 H 0.061 0.939 44 H 0.027 0.973 45 H 0.013 0.987 46 H 0.068 0.932 47 H 0.027 0.973 48 H 0.051 0.949 49 H 0.080 0.920 50 H 0.064 0.936 51 H 0.102 0.898 52 H 0.101 0.899 53 H 0.106 0.894 54 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -16.194 -2.883 -21.996 27.466 hybrid contribution 2.004 -0.451 -0.549 2.126 sum -14.190 -3.334 -22.545 26.847 Atomic orbital electron populations 1.21815 0.90375 1.04295 1.03812 1.23267 0.97167 0.79465 1.02291 1.86516 1.24064 1.33393 1.83468 1.24246 0.80623 0.93142 0.70897 1.90657 1.61187 1.44443 1.46876 1.21252 0.95982 0.88588 1.03543 1.21425 0.92255 0.96667 1.03370 1.21397 1.01036 0.94070 0.97165 1.21237 0.93321 0.82250 0.93302 1.86491 1.75791 1.25397 1.50234 1.22768 0.96549 0.99661 0.90877 1.60777 1.61848 1.06399 1.00802 1.21143 0.92389 0.96585 0.89337 0.93018 1.22113 0.97547 0.99318 0.96867 1.19494 0.96132 0.94057 0.94469 1.21608 0.94370 1.47227 0.95966 1.27054 1.01109 0.92742 1.00988 1.70942 1.03534 1.45754 1.38328 0.83154 0.73377 0.78057 0.73220 1.22307 1.19471 1.18692 1.19623 0.94739 0.95510 0.95273 1.21367 0.96965 0.99615 0.94249 1.21986 0.93494 0.96545 1.03885 1.21436 1.01801 0.95554 0.95027 0.88439 0.91444 0.90865 0.91178 0.92057 0.84608 0.90104 0.92416 0.89048 0.91359 0.76514 0.96332 0.90557 0.84322 0.94579 0.93851 0.97270 0.98697 0.93165 0.97256 0.94896 0.92030 0.93583 0.89812 0.89873 0.89402 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 10.29 71.98 0.74 -0.72 16 2 C 0.05 0.83 6.19 71.98 0.45 1.27 16 3 O -0.36 -6.90 10.12 -51.39 -0.52 -7.42 16 4 C 0.47 10.07 7.25 71.24 0.52 10.58 16 5 O -0.54 -15.17 15.73 21.99 0.35 -14.82 16 6 C -0.07 -1.23 2.63 -11.54 -0.03 -1.27 16 7 C -0.10 -1.83 4.22 30.60 0.13 -1.70 16 8 C -0.10 -1.74 5.10 30.60 0.16 -1.59 16 9 C 0.14 2.72 0.96 -10.79 -0.01 2.71 16 10 O -0.57 -11.85 12.97 -148.98 -1.93 -13.78 16 11 C 0.03 0.78 3.98 86.30 0.34 1.12 16 12 N -0.67 -17.96 5.27 -491.71 -2.59 -20.55 16 13 C 0.12 4.11 2.36 44.89 0.11 4.22 16 14 H 0.05 1.99 7.80 -2.39 -0.02 1.97 16 15 C -0.12 -4.92 5.21 30.80 0.16 -4.76 16 16 C 0.00 -0.16 5.99 30.25 0.18 0.02 16 17 C -0.57 -30.37 5.50 -16.17 -0.09 -30.46 16 18 C -0.02 -1.20 5.46 84.65 0.46 -0.74 16 19 N -0.95 -58.00 13.66 21.45 0.29 -57.71 16 20 Si 1.10 49.93 27.19 68.60 1.87 51.80 16 21 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 22 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 23 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 24 C -0.01 -0.60 5.56 30.11 0.17 -0.43 16 25 C -0.08 -3.17 5.54 30.66 0.17 -3.00 16 26 C -0.12 -1.97 4.86 30.61 0.15 -1.82 16 27 C -0.10 -1.72 4.87 30.62 0.15 -1.57 16 28 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.07 1.08 8.13 -2.39 -0.02 1.06 16 32 H 0.06 1.08 8.13 -2.39 -0.02 1.06 16 33 H 0.14 1.53 8.14 -2.38 -0.02 1.51 16 34 H 0.08 1.43 8.10 -2.39 -0.02 1.41 16 35 H 0.06 1.32 6.28 -2.39 -0.01 1.30 16 36 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.39 6.35 7.62 -74.06 -0.56 5.79 16 39 H 0.02 0.53 7.35 -2.39 -0.02 0.52 16 40 H 0.08 2.03 4.74 -2.39 -0.01 2.02 16 41 H 0.34 8.42 7.06 -89.70 -0.63 7.78 16 42 H 0.04 1.39 7.35 -2.38 -0.02 1.37 16 43 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.01 0.49 5.80 -2.39 -0.01 0.47 16 45 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 46 H 0.26 15.91 6.36 -92.71 -0.59 15.32 16 47 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 48 H 0.03 1.43 5.24 -2.39 -0.01 1.41 16 49 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 50 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 51 H 0.08 1.46 7.47 -2.38 -0.02 1.45 16 52 H 0.08 1.10 8.14 -2.39 -0.02 1.09 16 53 H 0.09 1.34 8.11 -2.39 -0.02 1.32 16 54 H 0.06 1.26 6.55 -2.39 -0.02 1.24 16 Total: -1.00 -67.29 402.02 1.09 -66.20 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: -0.12 Total: 24.43 kcal Atomic # 6 Polarization: -31.89 SS G_CDS: 3.75 Total: -28.14 kcal Atomic # 7 Polarization: -75.97 SS G_CDS: -2.30 Total: -78.26 kcal Atomic # 8 Polarization: -33.92 SS G_CDS: -2.11 Total: -36.02 kcal Atomic # 14 Polarization: 49.93 SS G_CDS: 1.87 Total: 51.80 kcal Total: -67.29 1.09 -66.20 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251073260.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.203 kcal (2) G-P(sol) polarization free energy of solvation -67.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds