Wall clock time and date at job start Sat Apr 11 2020 05:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45194 * 109.47153 * 2 1 4 4 C 1.34234 * 116.99800 * 179.97438 * 3 2 1 5 5 O 1.20819 * 120.00429 * 0.02562 * 4 3 2 6 6 C 1.50707 * 119.99660 * 180.02562 * 4 3 2 7 7 C 1.52998 * 109.47158 * 60.00036 * 6 4 3 8 8 C 1.53004 * 109.46787 * 179.97438 * 7 6 4 9 9 C 1.53001 * 109.47041 * 299.99929 * 8 7 6 10 10 O 1.42903 * 109.47203 * 300.00154 * 9 8 7 11 11 C 1.53004 * 109.47041 * 180.02562 * 9 8 7 12 12 N 1.46893 * 109.47236 * 185.00096 * 11 9 8 13 13 C 1.46899 * 110.99901 * 186.05618 * 12 11 9 14 14 C 1.50700 * 110.01739 * 303.39183 * 13 12 11 15 15 H 1.07994 * 119.99927 * 122.09134 * 14 13 12 16 16 C 1.37878 * 120.00141 * 302.09247 * 14 13 12 17 17 N 1.31514 * 120.00020 * 354.19904 * 16 14 13 18 18 Si 1.86800 * 120.00105 * 174.19307 * 16 14 13 19 19 H 1.48503 * 109.46782 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46840 * 120.00038 * 18 16 14 21 21 H 1.48494 * 109.47207 * 240.00430 * 18 16 14 22 22 C 1.54274 * 110.03173 * 181.95412 * 13 12 11 23 23 C 1.54888 * 104.19725 * 217.10602 * 22 13 12 24 24 C 1.54891 * 102.74853 * 37.93972 * 23 22 13 25 25 C 1.53868 * 110.03200 * 64.78876 * 13 12 11 26 26 C 1.53000 * 109.46942 * 60.00190 * 9 8 7 27 27 C 1.52997 * 109.47519 * 299.99586 * 26 9 8 28 28 H 1.08995 * 109.47321 * 299.99779 * 1 2 3 29 29 H 1.09003 * 109.46723 * 60.00062 * 1 2 3 30 30 H 1.08997 * 109.47004 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47069 * 239.99497 * 2 1 3 32 32 H 1.09003 * 109.46723 * 119.99938 * 2 1 3 33 33 H 1.09001 * 109.46922 * 300.00010 * 6 4 3 34 34 H 1.08997 * 109.46772 * 60.00248 * 7 6 4 35 35 H 1.08998 * 109.47225 * 299.99818 * 7 6 4 36 36 H 1.08998 * 109.46914 * 180.02562 * 8 7 6 37 37 H 1.09001 * 109.47037 * 60.00130 * 8 7 6 38 38 H 0.96700 * 113.99684 * 180.02562 * 10 9 8 39 39 H 1.08994 * 109.46764 * 305.00634 * 11 9 8 40 40 H 1.09003 * 109.46682 * 64.99927 * 11 9 8 41 41 H 1.00905 * 111.00232 * 62.10132 * 12 11 9 42 42 H 0.96999 * 120.00515 * 180.02562 * 17 16 14 43 43 H 1.09007 * 110.48488 * 335.78179 * 22 13 12 44 44 H 1.09000 * 110.48580 * 98.42090 * 22 13 12 45 45 H 1.09002 * 110.75435 * 279.63075 * 23 22 13 46 46 H 1.08997 * 110.75999 * 156.25145 * 23 22 13 47 47 H 1.09000 * 110.49196 * 203.38251 * 24 23 22 48 48 H 1.09000 * 110.49025 * 80.73789 * 24 23 22 49 49 H 1.09006 * 110.03203 * 238.56735 * 25 13 12 50 50 H 1.08998 * 110.03587 * 359.97438 * 25 13 12 51 51 H 1.09000 * 109.47181 * 60.00282 * 26 9 8 52 52 H 1.09006 * 109.46666 * 179.97438 * 26 9 8 53 53 H 1.08998 * 109.47335 * 179.97438 * 27 26 9 54 54 H 1.09000 * 109.47463 * 300.00524 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9374 0.0012 7 6 3.4488 3.6839 1.2504 8 6 4.0341 5.0976 1.2513 9 6 5.5620 5.0169 1.2521 10 8 6.0015 4.3186 2.4189 11 6 6.1474 6.4306 1.2536 12 7 7.6095 6.3553 1.1337 13 6 8.2184 7.6845 1.2757 14 6 7.6382 8.6294 0.2551 15 1 7.1513 9.5384 0.5762 16 6 7.7288 8.3335 -1.0884 17 7 8.4194 7.2873 -1.4862 18 14 6.8706 9.4184 -2.3438 19 1 6.1660 10.5227 -1.6442 20 1 7.8764 9.9863 -3.2771 21 1 5.8876 8.6090 -3.1078 22 6 9.7477 7.5869 1.0975 23 6 10.3148 8.6054 2.1174 24 6 9.3648 8.4402 3.3296 25 6 7.9750 8.2270 2.6948 26 6 6.0340 4.2703 0.0028 27 6 5.4487 2.8567 0.0019 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.5851 3.4697 -0.8888 34 1 3.7845 3.1515 2.1403 35 1 2.3603 3.7410 1.2501 36 1 3.6983 5.6293 2.1415 37 1 3.6989 5.6302 0.3613 38 1 6.9622 4.2300 2.4857 39 1 5.7422 6.9924 0.4121 40 1 5.8845 6.9316 2.1853 41 1 7.8791 5.9252 0.2616 42 1 8.4835 7.0793 -2.4315 43 1 10.0954 6.5803 1.3301 44 1 10.0321 7.8647 0.0826 45 1 10.2621 9.6193 1.7208 46 1 11.3382 8.3491 2.3911 47 1 9.3696 9.3407 3.9437 48 1 9.6505 7.5715 3.9227 49 1 7.4378 9.1742 2.6455 50 1 7.4046 7.5042 3.2781 51 1 5.6988 4.8030 -0.8871 52 1 7.1225 4.2132 0.0032 53 1 5.7846 2.3249 -0.8883 54 1 5.7839 2.3240 0.8919 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001251084232.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:09 Heat of formation + Delta-G solvation = -182.273047 kcal Electronic energy + Delta-G solvation = -31864.460115 eV Core-core repulsion = 27799.019815 eV Total energy + Delta-G solvation = -4065.440300 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.224 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.83531 -40.41727 -39.13353 -37.75998 -36.04247 -34.91282 -33.73368 -32.68052 -31.86329 -31.16276 -29.20126 -28.63070 -26.64927 -25.45524 -24.46202 -23.51194 -22.91734 -21.58687 -21.10103 -20.65556 -20.04382 -18.75355 -18.18434 -17.69479 -17.55858 -17.13194 -16.74063 -16.47765 -16.08704 -15.60265 -15.38672 -15.21216 -14.94860 -14.67269 -14.58642 -14.27941 -14.01769 -13.91586 -13.71524 -13.36874 -13.24651 -13.16459 -12.97161 -12.89930 -12.87043 -12.59791 -12.51740 -12.43942 -12.35466 -12.23712 -12.02017 -11.77926 -11.64385 -11.60590 -11.49302 -11.46818 -11.36298 -11.16383 -11.14979 -11.03542 -10.76494 -10.37885 -10.30799 -8.82668 -7.95200 -6.16301 1.12308 1.34175 1.41417 1.47883 1.65285 2.42821 3.17707 3.41389 3.61085 3.65524 3.80255 3.90662 3.99656 4.08138 4.11708 4.15246 4.20870 4.29056 4.30850 4.34328 4.41012 4.45865 4.54190 4.55589 4.79877 4.82323 4.88627 4.92152 4.92891 4.98565 5.04570 5.07011 5.09603 5.12224 5.16305 5.22353 5.23794 5.28963 5.30626 5.34648 5.40382 5.41878 5.44239 5.51649 5.57351 5.72321 5.73858 5.80010 6.02365 6.33914 6.69560 6.84948 6.98931 7.05213 7.26462 7.55271 8.94718 Molecular weight = 339.22amu Principal moments of inertia in cm(-1) A = 0.015301 B = 0.003007 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.556088 B = 9309.288046 C =10199.905596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.050 3.950 3 O -0.358 6.358 4 C 0.472 3.528 5 O -0.538 6.538 6 C -0.076 4.076 7 C -0.091 4.091 8 C -0.102 4.102 9 C 0.146 3.854 10 O -0.562 6.562 11 C 0.057 3.943 12 N -0.676 5.676 13 C 0.225 3.775 14 C -0.536 4.536 15 H 0.034 0.966 16 C 0.039 3.961 17 N -0.897 5.897 18 Si 0.926 3.074 19 H -0.279 1.279 20 H -0.288 1.288 21 H -0.281 1.281 22 C -0.091 4.091 23 C -0.116 4.116 24 C -0.110 4.110 25 C -0.106 4.106 26 C -0.131 4.131 27 C -0.087 4.087 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.120 0.880 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.383 0.617 39 H 0.013 0.987 40 H 0.053 0.947 41 H 0.343 0.657 42 H 0.260 0.740 43 H 0.035 0.965 44 H 0.045 0.955 45 H 0.048 0.952 46 H 0.065 0.935 47 H 0.064 0.936 48 H 0.066 0.934 49 H 0.035 0.965 50 H 0.054 0.946 51 H 0.059 0.941 52 H 0.065 0.935 53 H 0.061 0.939 54 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.637 -10.027 3.960 15.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.023 4.023 3 O -0.275 6.275 4 C 0.317 3.683 5 O -0.428 6.428 6 C -0.095 4.095 7 C -0.129 4.129 8 C -0.139 4.139 9 C 0.105 3.895 10 O -0.369 6.369 11 C -0.074 4.074 12 N -0.308 5.308 13 C 0.136 3.864 14 C -0.575 4.575 15 H 0.052 0.948 16 C -0.162 4.162 17 N -0.536 5.536 18 Si 0.754 3.246 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.207 1.207 22 C -0.130 4.130 23 C -0.154 4.154 24 C -0.148 4.148 25 C -0.144 4.144 26 C -0.169 4.169 27 C -0.124 4.124 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.118 0.882 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.138 0.862 34 H 0.084 0.916 35 H 0.110 0.890 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.232 0.768 39 H 0.032 0.968 40 H 0.072 0.928 41 H 0.164 0.836 42 H 0.070 0.930 43 H 0.054 0.946 44 H 0.064 0.936 45 H 0.066 0.934 46 H 0.084 0.916 47 H 0.082 0.918 48 H 0.085 0.915 49 H 0.054 0.946 50 H 0.072 0.928 51 H 0.078 0.922 52 H 0.083 0.917 53 H 0.080 0.920 54 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.954 -10.643 4.569 16.645 hybrid contribution 0.297 1.102 -2.204 2.482 sum -11.657 -9.541 2.365 15.248 Atomic orbital electron populations 1.21820 0.90268 1.04370 1.03770 1.23304 0.97219 0.79369 1.02430 1.86522 1.23830 1.33609 1.83527 1.24043 0.80640 0.92751 0.70884 1.90634 1.61180 1.44190 1.46816 1.21190 0.96273 0.89006 1.03053 1.21332 1.01270 0.94942 0.95335 1.21504 0.92078 0.97013 1.03354 1.21125 0.94133 0.89700 0.84574 1.86317 1.28404 1.78269 1.43931 1.22205 0.90801 0.95246 0.99155 1.61180 1.06240 1.22507 1.40863 1.19094 0.90931 0.85991 0.90426 1.21999 1.36472 1.06860 0.92208 0.94789 1.25349 0.95287 0.96225 0.99315 1.69859 1.40151 1.27937 1.15669 0.86012 0.78830 0.79690 0.80086 1.20363 1.21406 1.20665 1.22121 0.96695 0.96230 0.97916 1.22381 0.98156 0.98795 0.96094 1.22232 0.94939 1.00803 0.96797 1.22190 0.96748 0.98636 0.96818 1.22022 1.00973 0.95359 0.98502 1.21229 0.92001 0.96678 1.02532 0.91189 0.91258 0.88188 0.91467 0.91489 0.86175 0.91627 0.89039 0.90448 0.90025 0.76820 0.96844 0.92829 0.83620 0.93042 0.94576 0.93609 0.93364 0.91607 0.91763 0.91541 0.94631 0.92767 0.92215 0.91682 0.91986 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 10.29 71.98 0.74 -0.89 16 2 C 0.05 0.89 6.19 71.98 0.45 1.34 16 3 O -0.36 -8.14 10.12 -51.45 -0.52 -8.66 16 4 C 0.47 12.54 7.26 71.24 0.52 13.06 16 5 O -0.54 -17.30 15.73 21.99 0.35 -16.95 16 6 C -0.08 -1.89 2.63 -11.54 -0.03 -1.92 16 7 C -0.09 -2.15 4.99 30.60 0.15 -2.00 16 8 C -0.10 -2.71 4.94 30.60 0.15 -2.56 16 9 C 0.15 4.62 0.79 -10.79 -0.01 4.61 16 10 O -0.56 -17.89 11.63 -148.98 -1.73 -19.62 16 11 C 0.06 2.19 4.23 86.31 0.36 2.55 16 12 N -0.68 -28.18 5.33 -470.30 -2.51 -30.69 16 13 C 0.23 10.08 0.51 3.51 0.00 10.08 16 14 C -0.54 -27.00 6.64 25.60 0.17 -26.83 16 15 H 0.03 1.80 7.33 -2.91 -0.02 1.78 16 16 C 0.04 1.96 4.97 84.65 0.42 2.38 16 17 N -0.90 -45.67 10.17 21.45 0.22 -45.45 16 18 Si 0.93 41.44 29.54 68.60 2.03 43.47 16 19 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 21 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 22 C -0.09 -4.04 5.54 31.67 0.18 -3.86 16 23 C -0.12 -4.35 6.91 31.89 0.22 -4.13 16 24 C -0.11 -3.79 6.83 31.67 0.22 -3.57 16 25 C -0.11 -4.23 5.53 31.32 0.17 -4.06 16 26 C -0.13 -4.15 4.46 30.59 0.14 -4.01 16 27 C -0.09 -2.48 4.35 30.59 0.13 -2.35 16 28 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.07 1.20 8.13 -2.39 -0.02 1.18 16 32 H 0.07 1.21 8.13 -2.39 -0.02 1.19 16 33 H 0.12 2.64 8.14 -2.39 -0.02 2.62 16 34 H 0.06 1.71 7.68 -2.39 -0.02 1.69 16 35 H 0.09 1.79 8.11 -2.39 -0.02 1.77 16 36 H 0.08 2.01 8.14 -2.39 -0.02 2.00 16 37 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.38 11.80 8.66 -74.06 -0.64 11.16 16 39 H 0.01 0.59 7.19 -2.39 -0.02 0.57 16 40 H 0.05 2.13 6.50 -2.39 -0.02 2.11 16 41 H 0.34 15.57 5.14 -89.69 -0.46 15.11 16 42 H 0.26 12.94 8.31 -92.71 -0.77 12.17 16 43 H 0.04 1.58 8.05 -2.38 -0.02 1.56 16 44 H 0.05 2.31 6.41 -2.39 -0.02 2.30 16 45 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 47 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 48 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 49 H 0.03 1.48 7.37 -2.38 -0.02 1.46 16 50 H 0.05 2.11 6.76 -2.39 -0.02 2.10 16 51 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 52 H 0.06 2.29 6.66 -2.38 -0.02 2.28 16 53 H 0.06 1.79 8.10 -2.39 -0.02 1.77 16 54 H 0.07 2.04 7.64 -2.39 -0.02 2.02 16 Total: -1.00 -56.35 406.61 1.59 -54.76 By element: Atomic # 1 Polarization: 45.53 SS G_CDS: -0.22 Total: 45.31 kcal Atomic # 6 Polarization: -26.14 SS G_CDS: 3.98 Total: -22.16 kcal Atomic # 7 Polarization: -73.85 SS G_CDS: -2.29 Total: -76.14 kcal Atomic # 8 Polarization: -43.32 SS G_CDS: -1.91 Total: -45.23 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Total: -56.35 1.59 -54.76 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251084232.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.516 kcal (2) G-P(sol) polarization free energy of solvation -56.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds