Wall clock time and date at job start Sat Apr 11 2020 05:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00138 * 2 1 4 4 H 1.48502 * 109.46792 * 239.99635 * 3 2 1 5 5 H 1.48499 * 109.46947 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47059 * 119.99990 * 3 2 1 7 7 C 1.37884 * 119.99643 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99421 * 180.02562 * 7 2 1 9 9 C 1.50690 * 120.00333 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.47247 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47341 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.47289 * 55.00475 * 11 10 9 13 13 N 1.46906 * 109.47110 * 295.00196 * 11 10 9 14 14 C 1.50697 * 109.47466 * 175.00164 * 11 10 9 15 15 O 1.21289 * 119.99946 * 99.99678 * 14 11 10 16 16 N 1.34780 * 120.00232 * 280.00174 * 14 11 10 17 17 C 1.46497 * 120.00113 * 179.97438 * 16 14 11 18 18 C 1.53120 * 109.52539 * 274.68547 * 17 16 14 19 19 C 1.53034 * 109.27540 * 182.44139 * 18 17 16 20 20 N 1.46847 * 109.52810 * 59.17991 * 19 18 17 21 21 C 1.46897 * 111.00424 * 174.16063 * 20 19 18 22 22 C 1.53009 * 109.46654 * 314.20894 * 21 20 19 23 23 H 1.08993 * 109.87304 * 59.30314 * 22 21 20 24 24 C 1.54099 * 109.87616 * 180.30617 * 22 21 20 25 25 C 1.54818 * 104.18916 * 121.45174 * 24 22 21 26 26 C 1.54997 * 102.08614 * 20.88094 * 25 24 22 27 27 O 1.43742 * 109.87828 * 298.28737 * 22 21 20 28 28 C 1.46848 * 111.19515 * 298.25621 * 20 19 18 29 29 C 1.53039 * 109.52279 * 61.74103 * 28 20 19 30 30 H 0.96996 * 119.99918 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.47123 * 59.99807 * 9 7 2 32 32 H 1.08994 * 109.47518 * 300.00026 * 9 7 2 33 33 H 1.09002 * 109.46818 * 60.00108 * 10 9 7 34 34 H 1.09004 * 109.47686 * 300.00331 * 10 9 7 35 35 H 1.00896 * 111.00309 * 299.99732 * 13 11 10 36 36 H 1.00902 * 110.99923 * 63.95895 * 13 11 10 37 37 H 0.97001 * 119.99467 * 0.02562 * 16 14 11 38 38 H 1.09003 * 109.52033 * 34.87548 * 17 16 14 39 39 H 1.08991 * 109.50058 * 302.38188 * 18 17 16 40 40 H 1.08998 * 109.50314 * 62.50022 * 18 17 16 41 41 H 1.09005 * 109.46519 * 299.15865 * 19 18 17 42 42 H 1.09009 * 109.45503 * 179.18953 * 19 18 17 43 43 H 1.08998 * 109.47275 * 74.20220 * 21 20 19 44 44 H 1.09001 * 109.47180 * 194.21116 * 21 20 19 45 45 H 1.08996 * 110.49166 * 240.13359 * 24 22 21 46 46 H 1.09008 * 110.49243 * 2.77995 * 24 22 21 47 47 H 1.08993 * 110.90504 * 139.07889 * 25 24 22 48 48 H 1.08999 * 110.90669 * 262.68713 * 25 24 22 49 49 H 1.08998 * 110.61881 * 81.47786 * 26 25 24 50 50 H 1.09004 * 110.61308 * 204.31317 * 26 25 24 51 51 H 1.08999 * 109.46508 * 301.72605 * 28 20 19 52 52 H 1.08999 * 109.45179 * 181.74907 * 28 20 19 53 53 H 1.09002 * 109.50070 * 180.88024 * 29 28 20 54 54 H 1.08998 * 109.50409 * 60.75908 * 29 28 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 6 1.4803 -4.9871 -0.0001 12 1 0.7885 -5.0069 -0.8422 13 7 0.7281 -5.1189 1.2548 14 6 2.4549 -6.1298 -0.1239 15 8 2.7864 -6.7537 0.8620 16 7 2.9582 -6.4586 -1.3302 17 6 3.9061 -7.5691 -1.4504 18 6 5.3240 -7.0646 -1.1681 19 6 6.3159 -8.2149 -1.3547 20 7 6.2232 -8.7250 -2.7286 21 6 7.2566 -9.7369 -2.9854 22 6 8.6017 -9.2386 -2.4529 23 1 8.5287 -9.0479 -1.3823 24 6 9.6948 -10.2903 -2.7244 25 6 10.7405 -9.5378 -3.5830 26 6 10.4241 -8.0563 -3.2552 27 8 8.9832 -8.0345 -3.1390 28 6 4.8837 -9.2583 -3.0076 29 6 3.8489 -8.1392 -2.8704 30 1 -0.4850 0.8400 -0.0004 31 1 0.6247 -2.5571 -0.8897 32 1 0.6241 -2.5568 0.8902 33 1 2.8719 -3.6043 0.8906 34 1 2.8720 -3.6044 -0.8894 35 1 1.3475 -5.1034 2.0511 36 1 0.0232 -4.4009 1.3310 37 1 2.6934 -5.9594 -2.1186 38 1 3.6465 -8.3487 -0.7341 39 1 5.5676 -6.2582 -1.8595 40 1 5.3820 -6.6966 -0.1438 41 1 6.0801 -9.0153 -0.6534 42 1 7.3280 -7.8553 -1.1684 43 1 6.9885 -10.6660 -2.4824 44 1 7.3335 -9.9136 -4.0583 45 1 10.1408 -10.6274 -1.7887 46 1 9.2832 -11.1344 -3.2778 47 1 11.7540 -9.7961 -3.2763 48 1 10.5924 -9.7417 -4.6435 49 1 10.8876 -7.7642 -2.3130 50 1 10.7567 -7.4049 -4.0634 51 1 4.6545 -10.0538 -2.2986 52 1 4.8556 -9.6566 -4.0218 53 1 2.8531 -8.5389 -3.0622 54 1 4.0694 -7.3496 -3.5886 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261501525.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:13 Heat of formation + Delta-G solvation = -119.865348 kcal Electronic energy + Delta-G solvation = -30098.563270 eV Core-core repulsion = 26068.121922 eV Total energy + Delta-G solvation = -4030.441348 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.29560 -40.61135 -39.33689 -37.12423 -36.14909 -34.83300 -33.32899 -32.81856 -31.94488 -31.68177 -30.35970 -28.24530 -26.59153 -25.44260 -24.50789 -23.80775 -22.65883 -22.26203 -21.60776 -21.18534 -20.69270 -18.84985 -18.07789 -17.92216 -17.24877 -16.94485 -16.57394 -16.44073 -16.24691 -15.99398 -15.84935 -15.69911 -15.45851 -15.12629 -14.82055 -14.63841 -14.47553 -14.42727 -14.25062 -13.93143 -13.45669 -13.31474 -13.24228 -13.08984 -12.93517 -12.69133 -12.56144 -12.54019 -12.42074 -12.21252 -12.10609 -11.88941 -11.84735 -11.80710 -11.69427 -11.53753 -11.40189 -11.31873 -10.70331 -10.55599 -10.53771 -10.03531 -9.64448 -9.22451 -8.21312 -6.31577 1.39577 1.41172 1.49193 1.63004 2.13853 2.40023 2.77403 3.11214 3.11986 3.61752 3.66541 3.74750 3.77616 3.83076 3.88846 4.00730 4.05362 4.12192 4.13844 4.22056 4.25880 4.28339 4.38521 4.42790 4.51617 4.59788 4.64459 4.66941 4.69029 4.70266 4.83278 4.84156 4.87112 4.93177 4.95241 5.02093 5.03112 5.08482 5.12837 5.14889 5.22131 5.27885 5.46250 5.54247 5.65745 5.80580 5.95659 6.07331 6.11983 6.21006 6.21506 6.47407 6.56984 6.83344 7.26143 7.37155 8.89139 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012743 B = 0.002125 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.694116 B =13174.233152 C =14751.403322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.005 3.995 3 Si 0.959 3.041 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.545 4.545 8 H 0.053 0.947 9 C 0.030 3.970 10 C -0.120 4.120 11 C 0.081 3.919 12 H 0.110 0.890 13 N -0.830 5.830 14 C 0.528 3.472 15 O -0.572 6.572 16 N -0.715 5.715 17 C 0.148 3.852 18 C -0.120 4.120 19 C 0.064 3.936 20 N -0.541 5.541 21 C 0.060 3.940 22 C 0.067 3.933 23 H 0.062 0.938 24 C -0.148 4.148 25 C -0.148 4.148 26 C 0.033 3.967 27 O -0.384 6.384 28 C 0.061 3.939 29 C -0.115 4.115 30 H 0.264 0.736 31 H 0.003 0.997 32 H 0.003 0.997 33 H 0.042 0.958 34 H 0.064 0.936 35 H 0.343 0.657 36 H 0.352 0.648 37 H 0.413 0.587 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.047 0.953 41 H 0.032 0.968 42 H 0.080 0.920 43 H 0.058 0.942 44 H 0.086 0.914 45 H 0.085 0.915 46 H 0.090 0.910 47 H 0.094 0.906 48 H 0.079 0.921 49 H 0.060 0.940 50 H 0.095 0.905 51 H 0.038 0.962 52 H 0.097 0.903 53 H 0.088 0.912 54 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.581 -24.370 -10.121 32.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.194 4.194 3 Si 0.784 3.216 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.583 4.583 8 H 0.071 0.929 9 C -0.007 4.007 10 C -0.160 4.160 11 C -0.035 4.035 12 H 0.128 0.872 13 N -0.361 5.361 14 C 0.315 3.685 15 O -0.451 6.451 16 N -0.367 5.367 17 C 0.043 3.957 18 C -0.159 4.159 19 C -0.064 4.064 20 N -0.266 5.266 21 C -0.068 4.068 22 C 0.009 3.991 23 H 0.080 0.920 24 C -0.186 4.186 25 C -0.186 4.186 26 C -0.044 4.044 27 O -0.304 6.304 28 C -0.067 4.067 29 C -0.153 4.153 30 H 0.073 0.927 31 H 0.021 0.979 32 H 0.021 0.979 33 H 0.061 0.939 34 H 0.083 0.917 35 H 0.156 0.844 36 H 0.167 0.833 37 H 0.249 0.751 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.066 0.934 41 H 0.050 0.950 42 H 0.098 0.902 43 H 0.077 0.923 44 H 0.105 0.895 45 H 0.104 0.896 46 H 0.108 0.892 47 H 0.113 0.887 48 H 0.097 0.903 49 H 0.078 0.922 50 H 0.114 0.886 51 H 0.056 0.944 52 H 0.115 0.885 53 H 0.106 0.894 54 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 18.352 -24.878 -10.100 32.523 hybrid contribution 0.414 1.676 0.832 1.917 sum 18.766 -23.202 -9.268 31.247 Atomic orbital electron populations 1.70052 1.07427 1.27816 1.51231 1.25873 0.95774 1.02966 0.94766 0.85596 0.78382 0.78649 0.79002 1.19271 1.20719 1.19670 1.21581 0.93286 0.92497 1.50984 0.92855 1.18961 0.94010 0.91947 0.95752 1.22118 0.98760 0.93834 1.01252 1.21416 0.94798 0.91318 0.95932 0.87245 1.58764 1.18368 1.55601 1.03350 1.20710 0.80685 0.83977 0.83135 1.90611 1.61699 1.54459 1.38351 1.45984 1.45990 1.35229 1.09455 1.21005 0.87804 0.88246 0.98600 1.21873 0.94458 0.98835 1.00777 1.22007 0.99555 0.96024 0.88810 1.61933 1.03843 1.36645 1.24210 1.22373 0.89509 0.92702 1.02172 1.22983 0.94676 0.85415 0.96024 0.91977 1.22989 0.95527 0.98526 1.01580 1.23103 1.00222 0.94241 1.01033 1.23759 0.81257 0.97832 1.01514 1.89057 1.21807 1.40861 1.78628 1.22076 0.87252 0.95181 1.02207 1.21818 0.99964 0.99272 0.94246 0.92721 0.97890 0.97905 0.93930 0.91706 0.84416 0.83282 0.75114 0.91582 0.91386 0.93435 0.95026 0.90206 0.92349 0.89543 0.89627 0.89162 0.88725 0.90263 0.92185 0.88643 0.94410 0.88520 0.89382 0.90075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.70 13.29 21.45 0.28 -54.42 16 2 C 0.00 0.27 5.46 84.66 0.46 0.73 16 3 Si 0.96 43.93 29.54 68.60 2.03 45.96 16 4 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 7 C -0.55 -30.40 9.11 25.60 0.23 -30.16 16 8 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 9 C 0.03 1.52 4.74 29.84 0.14 1.66 16 10 C -0.12 -4.79 4.78 30.59 0.15 -4.64 16 11 C 0.08 2.77 3.21 44.17 0.14 2.91 16 12 H 0.11 3.46 8.14 -2.39 -0.02 3.45 16 13 N -0.83 -29.38 8.94 -171.80 -1.54 -30.92 16 14 C 0.53 17.62 7.05 87.66 0.62 18.24 16 15 O -0.57 -22.77 15.91 -3.06 -0.05 -22.82 16 16 N -0.71 -18.45 5.08 -442.15 -2.25 -20.70 16 17 C 0.15 3.46 2.52 45.07 0.11 3.57 16 18 C -0.12 -2.98 5.67 30.65 0.17 -2.81 16 19 C 0.06 1.34 4.86 86.32 0.42 1.76 16 20 N -0.54 -9.84 4.72 -896.34 -4.23 -14.06 16 21 C 0.06 0.85 4.75 86.31 0.41 1.26 16 22 C 0.07 0.99 2.68 30.97 0.08 1.07 16 23 H 0.06 0.99 6.19 -2.39 -0.01 0.98 16 24 C -0.15 -1.35 6.64 31.59 0.21 -1.14 16 25 C -0.15 -1.30 7.16 31.90 0.23 -1.08 16 26 C 0.03 0.44 7.72 72.67 0.56 1.00 16 27 O -0.38 -7.64 11.00 -148.98 -1.64 -9.27 16 28 C 0.06 0.92 5.42 86.33 0.47 1.39 16 29 C -0.11 -1.94 5.57 30.65 0.17 -1.76 16 30 H 0.26 14.77 8.31 -92.71 -0.77 14.00 16 31 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 32 H 0.00 0.14 6.87 -2.39 -0.02 0.12 16 33 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.06 2.46 8.14 -2.38 -0.02 2.45 16 35 H 0.34 12.45 8.58 -89.70 -0.77 11.68 16 36 H 0.35 12.59 7.55 -89.69 -0.68 11.91 16 37 H 0.41 8.85 8.61 -92.71 -0.80 8.05 16 38 H 0.07 1.79 7.58 -2.39 -0.02 1.78 16 39 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.03 0.65 8.14 -2.38 -0.02 0.63 16 42 H 0.08 1.73 5.71 -2.38 -0.01 1.71 16 43 H 0.06 0.67 8.08 -2.39 -0.02 0.65 16 44 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.09 0.62 7.70 -2.38 -0.02 0.60 16 47 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 48 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 49 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 50 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 51 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 52 H 0.10 1.15 8.12 -2.39 -0.02 1.14 16 53 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 54 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -69.55 418.42 -4.15 -73.70 By element: Atomic # 1 Polarization: 41.89 SS G_CDS: -1.35 Total: 40.54 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: 4.58 Total: -8.01 kcal Atomic # 7 Polarization: -112.37 SS G_CDS: -7.72 Total: -120.09 kcal Atomic # 8 Polarization: -30.41 SS G_CDS: -1.69 Total: -32.10 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -69.55 -4.15 -73.70 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261501525.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.162 kcal (2) G-P(sol) polarization free energy of solvation -69.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds