Wall clock time and date at job start Sat Apr 11 2020 05:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 120.00293 * 2 1 4 4 C 1.53004 * 109.47178 * 270.00080 * 3 2 1 5 5 N 1.46898 * 109.47508 * 179.97438 * 4 3 2 6 6 C 1.46893 * 111.00268 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.47239 * 180.02562 * 6 5 4 8 8 O 1.21286 * 120.00119 * 359.97438 * 7 6 5 9 9 N 1.34772 * 119.99796 * 179.97438 * 7 6 5 10 10 C 1.37101 * 119.99692 * 179.97438 * 9 7 6 11 11 H 1.07994 * 120.00138 * 0.02562 * 10 9 7 12 12 C 1.38953 * 119.99991 * 179.97438 * 10 9 7 13 13 N 1.31410 * 119.99937 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 120.00096 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47156 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.46993 * 120.00579 * 14 12 10 17 17 H 1.48501 * 109.47459 * 240.00249 * 14 12 10 18 18 C 1.34782 * 120.00100 * 180.02562 * 2 1 3 19 19 O 1.21284 * 119.99782 * 186.01754 * 18 2 1 20 20 C 1.50700 * 120.00007 * 6.00976 * 18 2 1 21 21 C 1.53000 * 108.79248 * 304.30077 * 20 18 2 22 22 C 1.54241 * 108.89170 * 62.85670 * 20 18 2 23 23 C 1.50472 * 108.52843 * 40.77111 * 22 20 18 24 24 C 1.54072 * 112.49668 * 94.14621 * 23 22 20 25 25 C 1.54059 * 112.81995 * 318.28675 * 24 23 22 26 26 C 1.50480 * 112.49557 * 318.28519 * 25 24 23 27 27 C 1.45532 * 108.89731 * 185.73961 * 20 18 2 28 28 H 1.08994 * 109.46884 * 264.66639 * 1 2 3 29 29 H 1.09003 * 109.46941 * 24.66945 * 1 2 3 30 30 H 1.08999 * 109.46960 * 144.66850 * 1 2 3 31 31 H 1.08996 * 109.47341 * 29.99375 * 3 2 1 32 32 H 1.09001 * 109.47524 * 150.00143 * 3 2 1 33 33 H 1.08999 * 109.47127 * 299.99790 * 4 3 2 34 34 H 1.09001 * 109.46842 * 59.99645 * 4 3 2 35 35 H 1.00905 * 110.99692 * 303.95514 * 5 4 3 36 36 H 1.09000 * 109.47253 * 299.99846 * 6 5 4 37 37 H 1.09006 * 109.47242 * 59.99824 * 6 5 4 38 38 H 0.97006 * 120.00402 * 0.02562 * 9 7 6 39 39 H 0.97004 * 120.00108 * 179.97438 * 13 12 10 40 40 H 1.08997 * 109.47178 * 301.44084 * 21 20 18 41 41 H 1.09005 * 109.47168 * 61.43883 * 21 20 18 42 42 H 1.09003 * 109.46731 * 181.43815 * 21 20 18 43 43 H 1.09000 * 109.62755 * 160.48166 * 22 20 18 44 44 H 1.09002 * 109.63343 * 281.05672 * 22 20 18 45 45 H 1.09001 * 108.87392 * 333.37533 * 23 22 20 46 46 H 1.09000 * 108.88010 * 214.92793 * 23 22 20 47 47 H 1.09003 * 108.81044 * 197.42429 * 24 23 22 48 48 H 1.08994 * 108.81064 * 79.15285 * 24 23 22 49 49 H 1.09001 * 108.87988 * 197.51030 * 25 24 23 50 50 H 1.08997 * 108.87886 * 79.05948 * 25 24 23 51 51 H 1.08998 * 109.62940 * 334.44434 * 26 25 24 52 52 H 1.08995 * 109.62856 * 213.86547 * 26 25 24 53 53 H 1.08999 * 108.89538 * 61.93695 * 27 20 18 54 54 H 1.09001 * 108.89697 * 180.42467 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7104 -1.4425 5 7 3.1866 2.9828 -1.4426 6 6 3.4503 3.4384 -2.8140 7 6 4.2036 4.7430 -2.7738 8 8 4.4920 5.2442 -1.7077 9 7 4.5568 5.3528 -3.9226 10 6 5.2417 6.5399 -3.8861 11 1 5.4984 6.9862 -2.9368 12 6 5.6064 7.1684 -5.0705 13 7 5.2944 6.6251 -6.2256 14 14 6.5388 8.7862 -5.0207 15 1 6.7657 9.1835 -3.6080 16 1 7.8468 8.6249 -5.7053 17 1 5.7459 9.8360 -5.7094 18 6 2.1389 -1.1672 -0.0005 19 8 3.3468 -1.1701 0.1096 20 6 1.3917 -2.4687 -0.1377 21 6 0.3338 -2.5483 0.9648 22 6 0.6868 -2.4976 -1.5094 23 6 1.6202 -1.9205 -2.5389 24 6 2.4447 -3.0039 -3.2602 25 6 2.9634 -4.0952 -2.3045 26 6 3.4724 -3.5292 -1.0064 27 6 2.3287 -3.5699 0.0277 28 1 -0.3633 -0.0955 1.0232 29 1 -0.3633 0.9339 -0.4289 30 1 -0.3633 -0.8384 -0.5943 31 1 1.6085 2.0284 0.5137 32 1 3.1500 1.1383 0.5138 33 1 3.0416 0.9507 -1.9564 34 1 1.5001 1.8407 -1.9563 35 1 2.6903 3.6865 -0.9166 36 1 4.0469 2.6908 -3.3368 37 1 2.5050 3.5802 -3.3379 38 1 4.3259 4.9521 -4.7754 39 1 5.5487 7.0640 -7.0525 40 1 0.8180 -2.4769 1.9387 41 1 -0.3735 -1.7269 0.8496 42 1 -0.1967 -3.4977 0.8914 43 1 0.4415 -3.5263 -1.7733 44 1 -0.2242 -1.9008 -1.4656 45 1 2.3024 -1.2272 -2.0471 46 1 1.0352 -1.3724 -3.2775 47 1 3.2965 -2.5303 -3.7484 48 1 1.8209 -3.4712 -4.0221 49 1 3.7724 -4.6373 -2.7941 50 1 2.1527 -4.7919 -2.0916 51 1 3.7932 -2.4985 -1.1571 52 1 4.3103 -4.1280 -0.6494 53 1 2.7564 -3.5220 1.0291 54 1 1.7895 -4.5112 -0.0791 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266728725.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:48 Heat of formation + Delta-G solvation = -80.651340 kcal Electronic energy + Delta-G solvation = -31106.305180 eV Core-core repulsion = 27077.564279 eV Total energy + Delta-G solvation = -4028.740901 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.48862 -40.20646 -38.72544 -37.44888 -36.47373 -35.84345 -34.74263 -33.30670 -33.03707 -30.90068 -28.75184 -28.01911 -27.53208 -25.87093 -25.65508 -24.05445 -23.84427 -22.15906 -21.12637 -20.26977 -19.95908 -19.70426 -17.93578 -17.58829 -17.46268 -17.11775 -16.66452 -16.50201 -16.33437 -15.92915 -15.56848 -15.39323 -15.23439 -15.12826 -14.73526 -14.52423 -14.37708 -14.04537 -13.86040 -13.68519 -13.56879 -13.52419 -13.35795 -13.20588 -13.11916 -12.92833 -12.84403 -12.68491 -12.42798 -12.34080 -12.16131 -12.12501 -12.07987 -11.53830 -11.49055 -11.35067 -11.26016 -11.04789 -11.04379 -10.41856 -10.32003 -10.04441 -9.60505 -9.38935 -8.48980 -5.98014 1.35277 1.40687 1.55217 1.66620 1.98067 2.01299 2.28525 2.95748 3.17912 3.37805 3.53356 3.68052 3.78417 3.91873 4.01506 4.07626 4.16764 4.22826 4.23480 4.26517 4.32350 4.35995 4.41301 4.44016 4.47058 4.53660 4.60067 4.66459 4.74817 4.80302 4.83605 4.90791 4.93442 4.98854 5.00687 5.05894 5.12651 5.25005 5.31485 5.32589 5.37098 5.37736 5.39084 5.39670 5.50340 5.55522 5.72401 5.82846 6.04236 6.35703 6.47251 6.56937 7.09817 7.26484 7.52447 8.07559 8.68764 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.019006 B = 0.002130 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.859442 B =13144.236609 C =13826.478735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.611 5.611 3 C 0.121 3.879 4 C 0.061 3.939 5 N -0.684 5.684 6 C 0.069 3.931 7 C 0.438 3.562 8 O -0.622 6.622 9 N -0.572 5.572 10 C -0.334 4.334 11 H 0.079 0.921 12 C -0.014 4.014 13 N -0.920 5.920 14 Si 0.994 3.006 15 H -0.273 1.273 16 H -0.271 1.271 17 H -0.268 1.268 18 C 0.519 3.481 19 O -0.577 6.577 20 C -0.067 4.067 21 C -0.166 4.166 22 C -0.103 4.103 23 C -0.130 4.130 24 C -0.116 4.116 25 C -0.114 4.114 26 C -0.133 4.133 27 C -0.094 4.094 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.349 0.651 36 H 0.094 0.906 37 H 0.072 0.928 38 H 0.397 0.603 39 H 0.278 0.722 40 H 0.046 0.954 41 H 0.098 0.902 42 H 0.088 0.912 43 H 0.096 0.904 44 H 0.102 0.898 45 H 0.038 0.962 46 H 0.069 0.931 47 H 0.038 0.962 48 H 0.075 0.925 49 H 0.053 0.947 50 H 0.077 0.923 51 H 0.065 0.935 52 H 0.048 0.952 53 H 0.044 0.956 54 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.587 -24.210 7.977 31.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 N -0.344 5.344 3 C -0.003 4.003 4 C -0.069 4.069 5 N -0.317 5.317 6 C -0.064 4.064 7 C 0.225 3.775 8 O -0.509 6.509 9 N -0.209 5.209 10 C -0.463 4.463 11 H 0.097 0.903 12 C -0.213 4.213 13 N -0.561 5.561 14 Si 0.818 3.182 15 H -0.198 1.198 16 H -0.197 1.197 17 H -0.193 1.193 18 C 0.310 3.690 19 O -0.457 6.457 20 C -0.070 4.070 21 C -0.223 4.223 22 C -0.140 4.140 23 C -0.168 4.168 24 C -0.154 4.154 25 C -0.151 4.151 26 C -0.171 4.171 27 C -0.132 4.132 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.125 0.875 31 H 0.114 0.886 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.168 0.832 36 H 0.112 0.888 37 H 0.090 0.910 38 H 0.230 0.770 39 H 0.088 0.912 40 H 0.065 0.935 41 H 0.117 0.883 42 H 0.107 0.893 43 H 0.115 0.885 44 H 0.120 0.880 45 H 0.057 0.943 46 H 0.088 0.912 47 H 0.057 0.943 48 H 0.093 0.907 49 H 0.072 0.928 50 H 0.096 0.904 51 H 0.083 0.917 52 H 0.067 0.933 53 H 0.063 0.937 54 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -17.136 -24.110 8.629 30.812 hybrid contribution 0.306 1.172 -0.801 1.452 sum -16.830 -22.938 7.828 29.508 Atomic orbital electron populations 1.22813 0.77424 1.05414 1.03629 1.47847 1.08293 1.04828 1.73423 1.21209 0.97747 0.85625 0.95738 1.22184 0.96257 0.90699 0.97799 1.59863 1.52846 1.06144 1.12859 1.21482 0.99580 0.93855 0.91466 1.20800 0.84611 0.88178 0.83880 1.90488 1.60759 1.68660 1.30973 1.41933 1.50373 1.21153 1.07488 1.19710 1.33154 0.99265 0.94201 0.90322 1.26072 0.98393 1.02924 0.93940 1.69680 1.47275 1.41227 0.97951 0.84853 0.77945 0.77126 0.78299 1.19805 1.19657 1.19310 1.21272 0.87450 0.86419 0.73893 1.90663 1.16665 1.87496 1.50827 1.19774 0.96806 0.91139 0.99316 1.22514 0.98143 1.05730 0.95925 1.21659 0.97949 1.04022 0.90384 1.21484 0.98225 0.98164 0.98877 1.21898 0.98994 0.96343 0.98167 1.21340 1.00746 0.97824 0.95213 1.21562 0.97702 1.02308 0.95492 1.20326 0.95846 0.98166 0.98859 0.90400 0.89930 0.87521 0.88561 0.92115 0.92811 0.93141 0.83161 0.88770 0.91018 0.76961 0.91231 0.93505 0.88345 0.89349 0.88546 0.88039 0.94300 0.91210 0.94347 0.90671 0.92805 0.90431 0.91652 0.93289 0.93695 0.89190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.42 8.55 127.77 1.09 1.51 16 2 N -0.61 -11.16 2.84 -846.76 -2.40 -13.56 16 3 C 0.12 2.80 5.69 86.38 0.49 3.29 16 4 C 0.06 1.56 6.01 86.30 0.52 2.08 16 5 N -0.68 -22.97 6.12 -517.93 -3.17 -26.14 16 6 C 0.07 2.49 6.17 85.56 0.53 3.02 16 7 C 0.44 21.61 7.82 87.66 0.69 22.30 16 8 O -0.62 -35.62 15.78 -3.05 -0.05 -35.67 16 9 N -0.57 -30.20 5.29 -306.99 -1.62 -31.82 16 10 C -0.33 -19.37 9.68 84.04 0.81 -18.56 16 11 H 0.08 4.88 7.16 -2.91 -0.02 4.86 16 12 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 13 N -0.92 -50.35 13.05 21.66 0.28 -50.07 16 14 Si 0.99 43.58 29.55 68.60 2.03 45.60 16 15 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 16 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 17 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 18 C 0.52 11.54 3.72 87.66 0.33 11.87 16 19 O -0.58 -18.71 12.87 -3.04 -0.04 -18.75 16 20 C -0.07 -0.96 0.44 -54.79 -0.02 -0.98 16 21 C -0.17 -1.44 7.85 71.98 0.57 -0.87 16 22 C -0.10 -1.05 4.25 30.20 0.13 -0.92 16 23 C -0.13 -2.08 5.17 30.14 0.16 -1.92 16 24 C -0.12 -1.92 5.85 31.32 0.18 -1.74 16 25 C -0.11 -1.83 5.31 30.14 0.16 -1.67 16 26 C -0.13 -2.82 5.20 30.20 0.16 -2.66 16 27 C -0.09 -1.57 3.59 28.73 0.10 -1.47 16 28 H 0.08 0.46 6.95 -2.39 -0.02 0.45 16 29 H 0.08 0.58 8.03 -2.39 -0.02 0.56 16 30 H 0.11 0.55 3.03 -2.39 -0.01 0.54 16 31 H 0.10 1.81 8.07 -2.39 -0.02 1.79 16 32 H 0.06 1.86 7.35 -2.39 -0.02 1.84 16 33 H 0.05 1.60 7.77 -2.39 -0.02 1.58 16 34 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.35 11.58 8.43 -89.69 -0.76 10.82 16 36 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 37 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 38 H 0.40 19.83 7.90 -92.70 -0.73 19.10 16 39 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 40 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.10 0.50 3.71 -2.38 -0.01 0.49 16 42 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 43 H 0.10 0.70 6.98 -2.39 -0.02 0.68 16 44 H 0.10 0.55 5.14 -2.39 -0.01 0.54 16 45 H 0.04 0.88 4.43 -2.39 -0.01 0.87 16 46 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.07 0.96 8.14 -2.39 -0.02 0.95 16 49 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 50 H 0.08 0.91 6.63 -2.39 -0.02 0.90 16 51 H 0.07 1.87 4.34 -2.39 -0.01 1.86 16 52 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 53 H 0.04 0.90 8.09 -2.39 -0.02 0.88 16 54 H 0.09 1.03 7.47 -2.39 -0.02 1.01 16 Total: -1.00 -76.61 398.85 0.81 -75.80 By element: Atomic # 1 Polarization: 42.16 SS G_CDS: -0.56 Total: 41.60 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: 6.35 Total: 13.01 kcal Atomic # 7 Polarization: -114.68 SS G_CDS: -6.92 Total: -121.60 kcal Atomic # 8 Polarization: -54.33 SS G_CDS: -0.09 Total: -54.42 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.60 kcal Total: -76.61 0.81 -75.80 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266728725.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.849 kcal (2) G-P(sol) polarization free energy of solvation -76.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds