Wall clock time and date at job start Sat Apr 11 2020 05:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00640 * 2 1 4 4 H 1.48499 * 109.47304 * 239.99983 * 3 2 1 5 5 H 1.48506 * 109.46600 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47518 * 119.99692 * 3 2 1 7 7 C 1.38818 * 119.99342 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99579 * 197.36573 * 7 2 1 9 9 N 1.36937 * 119.99966 * 17.36588 * 7 2 1 10 10 C 1.46928 * 120.62753 * 207.68297 * 9 7 2 11 11 C 1.53193 * 108.77494 * 233.58813 * 10 9 7 12 12 C 1.53034 * 109.34154 * 305.35353 * 11 10 9 13 13 C 1.53101 * 109.50619 * 61.34661 * 12 11 10 14 14 H 1.09004 * 109.48735 * 58.61216 * 13 12 11 15 15 N 1.46500 * 109.51639 * 178.68484 * 13 12 11 16 16 C 1.34774 * 120.00008 * 204.86589 * 15 13 12 17 17 O 1.21284 * 120.00027 * 0.02562 * 16 15 13 18 18 C 1.50693 * 119.99985 * 179.97438 * 16 15 13 19 19 C 1.53007 * 109.47402 * 180.02562 * 18 16 15 20 20 C 1.52999 * 109.47605 * 180.02562 * 19 18 16 21 21 C 1.52992 * 109.47296 * 179.97438 * 20 19 18 22 22 N 1.46899 * 109.47215 * 179.97438 * 21 20 19 23 23 C 1.47016 * 111.00068 * 293.63618 * 22 21 20 24 24 C 1.53095 * 109.26102 * 177.60778 * 23 22 21 25 25 O 1.43015 * 109.25839 * 56.84692 * 24 23 22 26 26 C 1.43019 * 113.73865 * 301.32984 * 25 24 23 27 27 C 1.47010 * 111.00060 * 169.99937 * 22 21 20 28 28 C 1.46923 * 120.63232 * 27.66631 * 9 7 2 29 29 H 0.97004 * 119.99493 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.58355 * 113.80331 * 10 9 7 31 31 H 1.08997 * 109.58949 * 353.37680 * 10 9 7 32 32 H 1.09005 * 109.49386 * 65.32087 * 11 10 9 33 33 H 1.09004 * 109.49947 * 185.37989 * 11 10 9 34 34 H 1.09002 * 109.46218 * 181.40187 * 12 11 10 35 35 H 1.09005 * 109.45841 * 301.35971 * 12 11 10 36 36 H 0.96993 * 119.99846 * 24.87545 * 15 13 12 37 37 H 1.09001 * 109.47919 * 300.00169 * 18 16 15 38 38 H 1.09004 * 109.47181 * 60.00651 * 18 16 15 39 39 H 1.09000 * 109.46630 * 299.99943 * 19 18 16 40 40 H 1.09004 * 109.46950 * 59.99861 * 19 18 16 41 41 H 1.09000 * 109.46929 * 300.00091 * 20 19 18 42 42 H 1.08999 * 109.47112 * 59.99351 * 20 19 18 43 43 H 1.09000 * 109.47312 * 299.99987 * 21 20 19 44 44 H 1.09004 * 109.46998 * 59.99766 * 21 20 19 45 45 H 1.09002 * 109.50307 * 297.54543 * 23 22 21 46 46 H 1.09003 * 109.50962 * 57.66825 * 23 22 21 47 47 H 1.09001 * 109.50331 * 296.91542 * 24 23 22 48 48 H 1.08994 * 109.54443 * 176.80212 * 24 23 22 49 49 H 1.09001 * 109.50608 * 298.73911 * 26 25 24 50 50 H 1.09001 * 109.54258 * 178.62693 * 26 25 24 51 51 H 1.08999 * 109.51002 * 302.32368 * 27 22 21 52 52 H 1.09002 * 109.50502 * 62.41450 * 27 22 21 53 53 H 1.08994 * 109.58324 * 246.19664 * 28 9 7 54 54 H 1.08997 * 109.58439 * 6.62159 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0532 -1.2235 0.2797 9 7 1.3721 -2.3612 -0.3529 10 6 1.8190 -3.6547 0.1819 11 6 2.0738 -4.6104 -0.9880 12 6 0.8184 -4.6911 -1.8593 13 6 0.5004 -3.3054 -2.4273 14 1 1.3491 -2.9479 -3.0105 15 7 -0.6832 -3.3885 -3.2866 16 6 -0.8703 -2.4811 -4.2655 17 8 -0.0586 -1.5960 -4.4352 18 6 -2.0875 -2.5669 -5.1498 19 6 -2.0578 -1.4275 -6.1705 20 6 -3.2939 -1.5142 -7.0680 21 6 -3.2644 -0.3745 -8.0882 22 7 -4.4509 -0.4582 -8.9503 23 6 -4.4112 -1.6674 -9.7854 24 6 -5.6909 -1.7456 -10.6221 25 8 -5.8185 -0.5533 -11.4015 26 6 -5.8610 0.6437 -10.6199 27 6 -4.5829 0.7460 -9.7832 28 6 0.2276 -2.3349 -1.2738 29 1 -0.4849 0.8401 -0.0004 30 1 1.0466 -4.0686 0.8301 31 1 2.7397 -3.5174 0.7488 32 1 2.9077 -4.2406 -1.5847 33 1 2.3136 -5.6015 -0.6026 34 1 0.9890 -5.3897 -2.6784 35 1 -0.0208 -5.0373 -1.2559 36 1 -1.3322 -4.0964 -3.1510 37 1 -2.0898 -3.5231 -5.6732 38 1 -2.9867 -2.4847 -4.5392 39 1 -2.0554 -0.4712 -5.6475 40 1 -1.1585 -1.5100 -6.7811 41 1 -3.2967 -2.4706 -7.5910 42 1 -4.1928 -1.4315 -6.4572 43 1 -3.2617 0.5816 -7.5649 44 1 -2.3653 -0.4569 -8.6991 45 1 -3.5459 -1.6246 -10.4469 46 1 -4.3390 -2.5483 -9.1474 47 1 -6.5524 -1.8424 -9.9612 48 1 -5.6413 -2.6098 -11.2844 49 1 -6.7274 0.6163 -9.9590 50 1 -5.9340 1.5079 -11.2801 51 1 -4.6363 1.6270 -9.1435 52 1 -3.7200 0.8278 -10.4441 53 1 -0.6745 -2.6411 -0.7442 54 1 0.0984 -1.3266 -1.6672 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267970540.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:19 Heat of formation + Delta-G solvation = -97.185114 kcal Electronic energy + Delta-G solvation = -29808.995178 eV Core-core repulsion = 25779.537319 eV Total energy + Delta-G solvation = -4029.457859 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.92828 -40.53090 -38.99821 -37.47991 -35.79646 -35.10218 -34.42030 -32.18688 -31.95879 -31.30794 -30.03028 -27.63324 -27.24191 -25.04965 -24.67003 -23.92986 -23.14420 -21.90805 -21.36995 -21.29033 -20.72038 -18.76296 -17.89983 -17.55396 -17.21636 -17.14111 -16.90161 -16.61725 -16.17735 -15.98947 -15.86041 -15.65220 -15.38724 -15.19447 -15.00790 -14.81757 -14.71322 -14.15456 -14.02801 -13.71866 -13.53740 -13.47364 -13.16857 -12.94747 -12.69777 -12.66525 -12.49454 -12.45818 -12.29486 -12.26478 -12.23936 -12.08313 -11.87866 -11.70110 -11.60684 -11.58543 -11.33053 -11.26416 -10.75408 -10.63178 -10.57049 -10.02763 -9.43973 -8.70492 -7.91151 -5.36519 1.38388 1.44535 1.49026 1.77573 2.29103 2.48047 2.72317 2.96254 3.24742 3.70023 3.78871 3.87234 3.92787 3.97262 4.00766 4.02463 4.13984 4.17935 4.20572 4.26196 4.30847 4.40042 4.44553 4.48865 4.55546 4.59051 4.63776 4.69186 4.74913 4.78871 4.81268 4.81999 4.89501 4.93061 4.94298 5.01976 5.05397 5.08036 5.19683 5.23884 5.32661 5.34207 5.42557 5.50865 5.54132 5.60350 5.79728 5.93060 5.95034 6.17023 6.34783 6.72491 7.10267 7.45209 7.83885 8.32479 9.13308 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.014785 B = 0.002001 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1893.371485 B =13987.656255 C =15518.136465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.052 4.052 3 Si 0.962 3.038 4 H -0.286 1.286 5 H -0.293 1.293 6 H -0.266 1.266 7 C -0.266 4.266 8 H 0.067 0.933 9 N -0.610 5.610 10 C 0.135 3.865 11 C -0.123 4.123 12 C -0.106 4.106 13 C 0.130 3.870 14 H 0.045 0.955 15 N -0.711 5.711 16 C 0.497 3.503 17 O -0.596 6.596 18 C -0.124 4.124 19 C -0.099 4.099 20 C -0.100 4.100 21 C 0.055 3.945 22 N -0.543 5.543 23 C 0.013 3.987 24 C 0.061 3.939 25 O -0.408 6.408 26 C 0.064 3.936 27 C 0.014 3.986 28 C 0.178 3.822 29 H 0.247 0.753 30 H 0.022 0.978 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.075 0.925 36 H 0.415 0.585 37 H 0.127 0.873 38 H 0.113 0.887 39 H 0.042 0.958 40 H 0.053 0.947 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.029 0.971 45 H 0.033 0.967 46 H 0.104 0.896 47 H 0.063 0.937 48 H 0.114 0.886 49 H 0.063 0.937 50 H 0.112 0.888 51 H 0.092 0.908 52 H 0.034 0.966 53 H 0.000 1.000 54 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.436 -10.135 -19.366 25.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.247 4.247 3 Si 0.790 3.210 4 H -0.213 1.213 5 H -0.219 1.219 6 H -0.191 1.191 7 C -0.396 4.396 8 H 0.085 0.915 9 N -0.334 5.334 10 C 0.010 3.990 11 C -0.162 4.162 12 C -0.143 4.143 13 C 0.023 3.977 14 H 0.063 0.937 15 N -0.363 5.363 16 C 0.285 3.715 17 O -0.476 6.476 18 C -0.164 4.164 19 C -0.138 4.138 20 C -0.137 4.137 21 C -0.073 4.073 22 N -0.268 5.268 23 C -0.115 4.115 24 C -0.015 4.015 25 O -0.327 6.327 26 C -0.013 4.013 27 C -0.114 4.114 28 C 0.051 3.949 29 H 0.056 0.944 30 H 0.040 0.960 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.116 0.884 34 H 0.104 0.896 35 H 0.094 0.906 36 H 0.251 0.749 37 H 0.145 0.855 38 H 0.131 0.869 39 H 0.061 0.939 40 H 0.072 0.928 41 H 0.099 0.901 42 H 0.095 0.905 43 H 0.088 0.912 44 H 0.047 0.953 45 H 0.051 0.949 46 H 0.122 0.878 47 H 0.082 0.918 48 H 0.132 0.868 49 H 0.081 0.919 50 H 0.130 0.870 51 H 0.111 0.889 52 H 0.052 0.948 53 H 0.018 0.982 54 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -12.383 -9.415 -19.352 24.829 hybrid contribution 1.098 1.327 0.226 1.737 sum -11.285 -8.088 -19.126 23.634 Atomic orbital electron populations 1.70165 1.06625 1.25661 1.55099 1.25794 0.96100 1.01585 1.01248 0.85420 0.77777 0.79527 0.78286 1.21299 1.21909 1.19138 1.19467 0.93033 0.86320 1.40816 0.91511 1.44255 1.36043 1.02654 1.50486 1.21186 0.97520 0.85638 0.94669 1.21908 0.97105 1.00096 0.97088 1.21640 0.98971 0.93966 0.99768 1.21455 0.87414 0.97773 0.91059 0.93677 1.45948 1.25772 1.31708 1.32894 1.21661 0.88360 0.80425 0.81046 1.90718 1.48315 1.36313 1.72262 1.21674 0.94956 1.02608 0.97155 1.21212 0.98437 0.97600 0.96582 1.21462 0.97353 0.98526 0.96383 1.22119 0.90199 1.00192 0.94747 1.62258 1.40109 1.02717 1.21746 1.22915 0.98111 0.94459 0.95977 1.22816 0.96368 0.87733 0.94634 1.87953 1.94416 1.15457 1.34879 1.22763 0.96181 0.87856 0.94493 1.22839 0.98441 0.94002 0.96103 1.20804 0.87980 0.97599 0.88485 0.94383 0.95974 0.92748 0.93247 0.88416 0.89576 0.90636 0.74850 0.85469 0.86925 0.93873 0.92830 0.90098 0.90457 0.91199 0.95292 0.94869 0.87830 0.91837 0.86823 0.91898 0.87002 0.88930 0.94790 0.98235 0.93945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.40 11.19 21.65 0.24 -58.15 16 2 C -0.05 -3.09 4.91 84.86 0.42 -2.67 16 3 Si 0.96 48.27 29.59 68.60 2.03 50.30 16 4 H -0.29 -14.39 7.11 99.48 0.71 -13.69 16 5 H -0.29 -14.69 7.11 99.48 0.71 -13.98 16 6 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 7 C -0.27 -15.53 9.59 84.03 0.81 -14.72 16 8 H 0.07 3.77 7.89 -2.91 -0.02 3.75 16 9 N -0.61 -32.02 2.99 -699.10 -2.09 -34.11 16 10 C 0.13 5.52 6.52 86.36 0.56 6.08 16 11 C -0.12 -3.84 6.08 30.67 0.19 -3.65 16 12 C -0.11 -3.07 5.36 30.64 0.16 -2.91 16 13 C 0.13 5.06 2.60 45.09 0.12 5.18 16 14 H 0.04 2.09 7.58 -2.38 -0.02 2.07 16 15 N -0.71 -21.96 5.08 -442.06 -2.25 -24.21 16 16 C 0.50 16.75 7.79 87.66 0.68 17.44 16 17 O -0.60 -27.58 15.65 -3.04 -0.05 -27.63 16 18 C -0.12 -2.61 5.70 29.85 0.17 -2.44 16 19 C -0.10 -2.29 4.50 30.60 0.14 -2.15 16 20 C -0.10 -1.63 5.15 30.59 0.16 -1.47 16 21 C 0.06 1.00 4.96 86.30 0.43 1.43 16 22 N -0.54 -9.11 4.73 -895.21 -4.23 -13.34 16 23 C 0.01 0.19 5.44 86.31 0.47 0.66 16 24 C 0.06 0.81 7.01 72.01 0.50 1.31 16 25 O -0.41 -7.18 10.83 -148.98 -1.61 -8.79 16 26 C 0.06 0.90 7.01 72.02 0.50 1.40 16 27 C 0.01 0.22 5.64 86.32 0.49 0.71 16 28 C 0.18 9.06 4.89 86.36 0.42 9.49 16 29 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 30 H 0.02 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.05 2.19 7.93 -2.39 -0.02 2.17 16 32 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 33 H 0.10 2.30 8.14 -2.38 -0.02 2.28 16 34 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 36 H 0.41 8.93 8.60 -92.71 -0.80 8.13 16 37 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.04 1.24 8.10 -2.39 -0.02 1.22 16 40 H 0.05 1.37 8.10 -2.39 -0.02 1.36 16 41 H 0.08 1.03 6.52 -2.39 -0.02 1.02 16 42 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.07 1.37 8.04 -2.39 -0.02 1.35 16 44 H 0.03 0.56 8.12 -2.39 -0.02 0.54 16 45 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.10 1.16 6.38 -2.39 -0.02 1.14 16 47 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 50 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 51 H 0.09 1.31 8.09 -2.39 -0.02 1.29 16 52 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 53 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 54 H 0.04 2.60 6.04 -2.39 -0.01 2.58 16 Total: -1.00 -80.60 416.34 -1.68 -82.28 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: 0.06 Total: 19.97 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: 6.22 Total: 13.67 kcal Atomic # 7 Polarization: -121.48 SS G_CDS: -8.33 Total: -129.81 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -1.66 Total: -36.42 kcal Atomic # 14 Polarization: 48.27 SS G_CDS: 2.03 Total: 50.30 kcal Total: -80.60 -1.68 -82.28 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267970540.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.905 kcal (2) G-P(sol) polarization free energy of solvation -80.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds