Wall clock time and date at job start Sat Apr 11 2020 05:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46905 * 110.99681 * 2 1 4 4 C 1.52997 * 109.47388 * 66.04728 * 3 2 1 5 5 N 1.46500 * 109.47110 * 180.02562 * 4 3 2 6 6 C 1.46499 * 120.00123 * 269.99619 * 5 4 3 7 7 C 1.34779 * 120.00165 * 89.99460 * 5 4 3 8 8 O 1.21282 * 119.99927 * 0.02562 * 7 5 4 9 9 C 1.50699 * 120.00033 * 179.97438 * 7 5 4 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 5 11 11 C 1.53777 * 113.61386 * 274.13321 * 10 9 7 12 12 C 1.53950 * 87.02290 * 220.05104 * 11 10 9 13 13 C 1.53002 * 113.53668 * 270.81621 * 12 11 10 14 14 C 1.53001 * 113.74480 * 139.94446 * 12 11 10 15 15 C 1.53780 * 113.61053 * 176.52675 * 10 9 7 16 16 C 1.46892 * 111.00403 * 236.04406 * 2 1 3 17 17 C 1.50701 * 109.47135 * 293.95495 * 16 2 1 18 18 O 1.21296 * 120.00033 * 359.97438 * 17 16 2 19 19 N 1.34775 * 120.00347 * 179.97438 * 17 16 2 20 20 C 1.37091 * 120.00455 * 179.97438 * 19 17 16 21 21 H 1.08005 * 119.99997 * 0.02562 * 20 19 17 22 22 C 1.38947 * 120.00641 * 179.97438 * 20 19 17 23 23 N 1.31418 * 119.99636 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00417 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47207 * 89.99997 * 24 22 20 26 26 H 1.48497 * 109.47082 * 209.99971 * 24 22 20 27 27 H 1.48499 * 109.46984 * 330.00208 * 24 22 20 28 28 H 1.08995 * 109.47004 * 60.00109 * 1 2 3 29 29 H 1.08997 * 109.47175 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47434 * 300.00162 * 1 2 3 31 31 H 1.08998 * 109.47110 * 306.03887 * 3 2 1 32 32 H 1.09005 * 109.46909 * 186.04362 * 3 2 1 33 33 H 1.08993 * 109.47244 * 59.99665 * 4 3 2 34 34 H 1.09005 * 109.46797 * 299.99703 * 4 3 2 35 35 H 1.08998 * 109.47147 * 270.00145 * 6 5 4 36 36 H 1.09001 * 109.46572 * 30.00275 * 6 5 4 37 37 H 1.09003 * 109.47046 * 149.99648 * 6 5 4 38 38 H 1.08993 * 109.47512 * 60.00410 * 9 7 5 39 39 H 1.09000 * 109.47247 * 300.00119 * 9 7 5 40 40 H 1.08998 * 112.84948 * 45.33195 * 10 9 7 41 41 H 1.08999 * 113.61825 * 334.57628 * 11 10 9 42 42 H 1.09009 * 113.61337 * 105.47075 * 11 10 9 43 43 H 1.09007 * 109.47013 * 157.49311 * 13 12 11 44 44 H 1.08998 * 109.47014 * 277.48731 * 13 12 11 45 45 H 1.08998 * 109.47348 * 37.49007 * 13 12 11 46 46 H 1.08999 * 109.46898 * 322.40347 * 14 12 11 47 47 H 1.08997 * 109.47016 * 82.40386 * 14 12 11 48 48 H 1.08996 * 109.46824 * 202.40468 * 14 12 11 49 49 H 1.08992 * 113.61837 * 254.52753 * 15 10 9 50 50 H 1.09001 * 113.61413 * 25.43567 * 15 10 9 51 51 H 1.09001 * 109.46962 * 53.95224 * 16 2 1 52 52 H 1.08999 * 109.47461 * 173.95401 * 16 2 1 53 53 H 0.97005 * 119.99623 * 359.97438 * 19 17 16 54 54 H 0.96997 * 119.99990 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 1.3182 5 7 2.1558 3.4254 1.3179 6 6 3.5008 3.6945 1.8327 7 6 1.4010 4.4365 0.8440 8 8 0.2875 4.2139 0.4181 9 6 1.9403 5.8437 0.8442 10 6 0.8916 6.7918 0.2590 11 6 0.9388 6.8913 -1.2749 12 6 0.6808 8.3994 -1.1048 13 6 -0.8044 8.7657 -1.0749 14 6 1.4895 9.2748 -2.0644 15 6 1.3117 8.2707 0.2918 16 6 1.9955 -0.7660 -1.1375 17 6 1.6370 -2.2204 -0.9727 18 8 1.0054 -2.5833 -0.0028 19 7 2.0181 -3.1180 -1.9030 20 6 1.6925 -4.4412 -1.7529 21 1 1.1301 -4.7643 -0.8893 22 6 2.0849 -5.3666 -2.7122 23 7 2.7679 -4.9732 -3.7639 24 14 1.6405 -7.1694 -2.5080 25 1 0.3277 -7.4315 -3.1507 26 1 2.6823 -8.0116 -3.1487 27 1 1.5582 -7.4982 -1.0622 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.5611 1.9273 -0.8310 32 1 3.0797 1.3445 -0.1082 33 1 2.0657 1.5017 2.1491 34 1 0.5471 2.0845 1.4264 35 1 3.4449 3.9107 2.8996 36 1 4.1328 2.8212 1.6715 37 1 3.9252 4.5516 1.3099 38 1 2.8462 5.8857 0.2396 39 1 2.1712 6.1441 1.8662 40 1 -0.1082 6.6130 0.6544 41 1 1.9166 6.6604 -1.6976 42 1 0.1260 6.3616 -1.7720 43 1 -0.9323 9.7236 -0.5706 44 1 -1.1811 8.8391 -2.0951 45 1 -1.3578 7.9955 -0.5377 46 1 2.4840 8.8481 -2.1948 47 1 0.9839 9.3195 -3.0289 48 1 1.5766 10.2803 -1.6528 49 1 0.7997 8.8532 1.0576 50 1 2.3918 8.4178 0.2982 51 1 1.5612 -0.3873 -2.0627 52 1 3.0798 -0.6611 -1.1755 53 1 2.5229 -2.8278 -2.6789 54 1 3.0422 -5.6192 -4.4334 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268246864.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:35 Heat of formation + Delta-G solvation = -75.078203 kcal Electronic energy + Delta-G solvation = -29608.591364 eV Core-core repulsion = 25580.092133 eV Total energy + Delta-G solvation = -4028.499232 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.37379 -40.45876 -40.03173 -38.10229 -36.43382 -35.82221 -33.36947 -33.26927 -31.26098 -29.35699 -28.69055 -28.26968 -27.64753 -26.82879 -26.57945 -25.32394 -22.75926 -21.66579 -21.01634 -19.99302 -19.83163 -19.16171 -18.03964 -17.85360 -17.42403 -16.77101 -16.62405 -16.47623 -16.18823 -15.90482 -15.65700 -15.32576 -15.19047 -15.05562 -14.87147 -14.41533 -14.25965 -13.95620 -13.85635 -13.74586 -13.57333 -13.46110 -13.25566 -13.17450 -13.04696 -13.01763 -12.69593 -12.67279 -12.61198 -12.56538 -12.40817 -12.23121 -12.11827 -11.87191 -11.67023 -11.46715 -11.41963 -10.97306 -10.86648 -10.67585 -10.34421 -10.00730 -9.68181 -9.31229 -8.46583 -5.95292 1.37799 1.41487 1.54438 1.66779 1.96479 2.04132 2.29526 2.83406 3.19771 3.38843 3.50590 3.64461 3.75249 3.77294 3.88684 4.02119 4.11053 4.20631 4.28450 4.32317 4.34936 4.43883 4.44756 4.48830 4.54333 4.57955 4.60577 4.66942 4.75954 4.78420 4.79422 4.81095 4.90418 4.92384 4.92796 5.00761 5.02914 5.04139 5.05807 5.13941 5.19543 5.31065 5.35166 5.41016 5.49324 5.60581 5.68974 5.81887 6.01220 6.11762 6.44317 6.60310 7.12709 7.22827 7.55617 8.11506 8.70903 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.020775 B = 0.001736 C = 0.001681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.471948 B =16126.078192 C =16651.748987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.528 5.528 3 C 0.052 3.948 4 C 0.124 3.876 5 N -0.617 5.617 6 C 0.069 3.931 7 C 0.502 3.498 8 O -0.586 6.586 9 C -0.120 4.120 10 C -0.097 4.097 11 C -0.130 4.130 12 C -0.092 4.092 13 C -0.130 4.130 14 C -0.133 4.133 15 C -0.113 4.113 16 C 0.058 3.942 17 C 0.442 3.558 18 O -0.613 6.613 19 N -0.574 5.574 20 C -0.332 4.332 21 H 0.079 0.921 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.994 3.006 25 H -0.272 1.272 26 H -0.270 1.270 27 H -0.272 1.272 28 H 0.017 0.983 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.022 0.978 32 H 0.092 0.908 33 H 0.095 0.905 34 H 0.061 0.939 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.096 0.904 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.071 0.929 41 H 0.086 0.914 42 H 0.039 0.961 43 H 0.067 0.933 44 H 0.054 0.946 45 H 0.044 0.956 46 H 0.061 0.939 47 H 0.049 0.951 48 H 0.064 0.936 49 H 0.072 0.928 50 H 0.101 0.899 51 H 0.060 0.940 52 H 0.115 0.885 53 H 0.396 0.604 54 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.879 30.903 7.171 32.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.253 5.253 3 C -0.077 4.077 4 C 0.000 4.000 5 N -0.350 5.350 6 C -0.072 4.072 7 C 0.292 3.708 8 O -0.466 6.466 9 C -0.159 4.159 10 C -0.116 4.116 11 C -0.168 4.168 12 C -0.092 4.092 13 C -0.187 4.187 14 C -0.190 4.190 15 C -0.150 4.150 16 C -0.073 4.073 17 C 0.230 3.770 18 O -0.499 6.499 19 N -0.211 5.211 20 C -0.462 4.462 21 H 0.097 0.903 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.818 3.182 25 H -0.198 1.198 26 H -0.194 1.194 27 H -0.197 1.197 28 H 0.036 0.964 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.040 0.960 32 H 0.110 0.890 33 H 0.114 0.886 34 H 0.079 0.921 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.115 0.885 38 H 0.135 0.865 39 H 0.137 0.863 40 H 0.090 0.910 41 H 0.104 0.896 42 H 0.058 0.942 43 H 0.086 0.914 44 H 0.073 0.927 45 H 0.063 0.937 46 H 0.080 0.920 47 H 0.068 0.932 48 H 0.083 0.917 49 H 0.091 0.909 50 H 0.119 0.881 51 H 0.078 0.922 52 H 0.133 0.867 53 H 0.229 0.771 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.137 30.217 7.878 31.500 hybrid contribution -0.607 -0.898 -1.359 1.738 sum 3.530 29.319 6.519 30.241 Atomic orbital electron populations 1.22393 0.87245 1.02087 1.00042 1.61507 1.08490 1.12962 1.42292 1.22429 1.00851 0.86879 0.97522 1.21248 0.99689 0.81700 0.97392 1.48030 1.18050 1.06525 1.62355 1.22133 0.80907 1.03914 1.00270 1.21542 0.84776 0.88539 0.75937 1.90693 1.22160 1.85564 1.48147 1.21769 1.00219 0.88663 1.05240 1.22225 0.98409 0.95022 0.95971 1.23179 1.01313 0.96072 0.96192 1.21825 0.95861 0.94690 0.96856 1.21604 0.94023 1.01384 1.01711 1.21708 0.99436 0.99545 0.98291 1.23078 1.01764 0.94079 0.96087 1.21746 1.02235 0.90382 0.92942 1.20675 0.83809 0.88568 0.83989 1.90462 1.45077 1.81359 1.32972 1.41923 1.50077 1.07068 1.22055 1.19668 1.34447 0.83969 1.08113 0.90253 1.26050 0.96250 1.04386 0.94651 1.69677 1.38165 1.37209 1.11138 0.84914 0.78187 0.76728 0.78417 1.19786 1.19449 1.19723 0.96432 0.92032 0.90748 0.96019 0.88958 0.88633 0.92063 0.90871 0.90142 0.88533 0.86512 0.86314 0.91018 0.89594 0.94191 0.91370 0.92694 0.93679 0.91977 0.93173 0.91718 0.90939 0.88070 0.92203 0.86740 0.77054 0.91313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.12 8.96 127.69 1.14 2.26 16 2 N -0.53 -18.33 4.50 -927.07 -4.17 -22.50 16 3 C 0.05 1.39 5.28 86.30 0.46 1.85 16 4 C 0.12 2.96 5.33 86.38 0.46 3.42 16 5 N -0.62 -11.32 2.87 -846.76 -2.43 -13.75 16 6 C 0.07 0.61 10.24 127.77 1.31 1.92 16 7 C 0.50 10.73 7.67 87.66 0.67 11.40 16 8 O -0.59 -18.46 15.37 -3.04 -0.05 -18.50 16 9 C -0.12 -1.45 4.08 29.85 0.12 -1.32 16 10 C -0.10 -1.48 2.76 -10.27 -0.03 -1.51 16 11 C -0.13 -2.16 6.76 31.18 0.21 -1.95 16 12 C -0.09 -1.18 1.39 -51.59 -0.07 -1.25 16 13 C -0.13 -1.79 9.07 71.98 0.65 -1.14 16 14 C -0.13 -1.36 9.20 71.98 0.66 -0.70 16 15 C -0.11 -1.14 6.79 31.12 0.21 -0.92 16 16 C 0.06 2.14 5.45 85.56 0.47 2.60 16 17 C 0.44 21.68 7.47 87.66 0.66 22.34 16 18 O -0.61 -34.52 13.91 -3.08 -0.04 -34.56 16 19 N -0.57 -30.10 5.29 -306.98 -1.62 -31.72 16 20 C -0.33 -19.16 9.68 84.04 0.81 -18.35 16 21 H 0.08 4.87 7.16 -2.91 -0.02 4.84 16 22 C -0.01 -0.75 5.50 84.92 0.47 -0.28 16 23 N -0.92 -50.24 13.05 21.66 0.28 -49.96 16 24 Si 0.99 43.47 29.55 68.60 2.03 45.50 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 26 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 27 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 28 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 2.69 5.83 -2.39 -0.01 2.68 16 30 H 0.07 2.48 6.47 -2.38 -0.02 2.47 16 31 H 0.02 0.64 8.12 -2.39 -0.02 0.62 16 32 H 0.09 2.09 7.93 -2.38 -0.02 2.07 16 33 H 0.10 2.11 8.07 -2.39 -0.02 2.09 16 34 H 0.06 1.78 5.83 -2.38 -0.01 1.77 16 35 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.08 0.68 8.07 -2.39 -0.02 0.66 16 37 H 0.10 0.38 6.44 -2.39 -0.02 0.37 16 38 H 0.12 0.88 7.13 -2.39 -0.02 0.86 16 39 H 0.12 0.85 8.11 -2.39 -0.02 0.83 16 40 H 0.07 1.49 7.25 -2.39 -0.02 1.47 16 41 H 0.09 1.25 7.75 -2.39 -0.02 1.23 16 42 H 0.04 0.88 8.10 -2.38 -0.02 0.86 16 43 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 44 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.04 0.74 7.34 -2.39 -0.02 0.73 16 46 H 0.06 0.56 7.96 -2.39 -0.02 0.54 16 47 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 48 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 49 H 0.07 0.68 8.10 -2.39 -0.02 0.66 16 50 H 0.10 0.65 8.06 -2.39 -0.02 0.63 16 51 H 0.06 2.07 8.12 -2.39 -0.02 2.05 16 52 H 0.11 3.58 7.93 -2.39 -0.02 3.56 16 53 H 0.40 19.71 7.90 -92.70 -0.73 18.98 16 54 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 Total: -1.00 -75.08 426.33 2.34 -72.75 By element: Atomic # 1 Polarization: 34.24 SS G_CDS: 0.14 Total: 34.38 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: 8.20 Total: 18.37 kcal Atomic # 7 Polarization: -109.99 SS G_CDS: -7.94 Total: -117.93 kcal Atomic # 8 Polarization: -52.97 SS G_CDS: -0.09 Total: -53.06 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -75.08 2.34 -72.75 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268246864.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.330 kcal (2) G-P(sol) polarization free energy of solvation -75.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds