Wall clock time and date at job start Sat Apr 11 2020 05:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52991 * 109.47289 * 2 1 4 4 C 1.50700 * 110.01845 * 64.42008 * 3 2 1 5 5 O 1.21279 * 120.00030 * 257.81974 * 4 3 2 6 6 N 1.34774 * 119.99871 * 77.81527 * 4 3 2 7 7 C 1.46499 * 120.00252 * 356.15248 * 6 4 3 8 8 C 1.46507 * 120.00105 * 176.15229 * 6 4 3 9 9 C 1.52999 * 109.46883 * 90.00075 * 8 6 4 10 10 C 1.53003 * 109.46868 * 180.02562 * 9 8 6 11 11 N 1.46901 * 109.47143 * 179.97438 * 10 9 8 12 12 C 1.46889 * 111.00153 * 179.97438 * 11 10 9 13 13 C 1.50705 * 109.47472 * 179.97438 * 12 11 10 14 14 O 1.21293 * 119.99366 * 0.02562 * 13 12 11 15 15 N 1.34773 * 120.00227 * 179.97438 * 13 12 11 16 16 C 1.37097 * 119.99737 * 179.97438 * 15 13 12 17 17 H 1.07995 * 119.99962 * 0.02562 * 16 15 13 18 18 C 1.38959 * 119.99643 * 180.02562 * 16 15 13 19 19 N 1.31406 * 119.99811 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99698 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47166 * 59.99804 * 20 18 16 22 22 H 1.48500 * 109.46765 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.46762 * 299.99764 * 20 18 16 24 24 C 1.54270 * 110.03460 * 302.98086 * 3 2 1 25 25 C 1.54892 * 104.19585 * 217.10511 * 24 3 2 26 26 C 1.54895 * 102.74769 * 37.93999 * 25 24 3 27 27 C 1.53873 * 110.03500 * 185.81249 * 3 2 1 28 28 H 1.09005 * 109.47587 * 175.68952 * 1 2 3 29 29 H 1.09006 * 109.47137 * 55.69269 * 1 2 3 30 30 H 1.08996 * 109.47731 * 295.69588 * 1 2 3 31 31 H 1.09007 * 109.46951 * 120.00201 * 2 1 3 32 32 H 1.09004 * 109.47335 * 239.99972 * 2 1 3 33 33 H 1.09006 * 109.47264 * 89.77040 * 7 6 4 34 34 H 1.09001 * 109.47553 * 209.77030 * 7 6 4 35 35 H 1.09005 * 109.47079 * 329.77674 * 7 6 4 36 36 H 1.09002 * 109.46740 * 210.00049 * 8 6 4 37 37 H 1.08996 * 109.46817 * 329.99829 * 8 6 4 38 38 H 1.09001 * 109.46748 * 299.99918 * 9 8 6 39 39 H 1.08997 * 109.47095 * 60.00385 * 9 8 6 40 40 H 1.08995 * 109.46960 * 299.99683 * 10 9 8 41 41 H 1.08997 * 109.47018 * 60.00252 * 10 9 8 42 42 H 1.00907 * 110.99848 * 56.04661 * 11 10 9 43 43 H 1.09000 * 109.47513 * 300.00234 * 12 11 10 44 44 H 1.09003 * 109.47339 * 60.00273 * 12 11 10 45 45 H 0.96998 * 119.99697 * 0.02562 * 15 13 12 46 46 H 0.97001 * 119.99734 * 179.97438 * 19 18 16 47 47 H 1.09000 * 110.48096 * 335.77867 * 24 3 2 48 48 H 1.08991 * 110.48782 * 98.42666 * 24 3 2 49 49 H 1.08992 * 110.75689 * 279.62453 * 25 24 3 50 50 H 1.09000 * 110.75598 * 156.25391 * 25 24 3 51 51 H 1.09003 * 110.48127 * 203.37703 * 26 25 24 52 52 H 1.09002 * 110.48749 * 80.73812 * 26 25 24 53 53 H 1.08996 * 110.03490 * 238.56990 * 27 3 2 54 54 H 1.08998 * 110.03265 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.6355 2.1326 1.2772 5 8 0.7000 2.9044 1.2794 6 7 2.3134 1.8920 2.4169 7 6 3.3888 0.8973 2.4336 8 6 1.9750 2.6254 3.6392 9 6 0.9040 1.8562 4.4154 10 6 0.5501 2.6224 5.6916 11 7 -0.4786 1.8843 6.4365 12 6 -0.8437 2.5914 7.6711 13 6 -1.8992 1.8063 8.4064 14 8 -2.3067 0.7602 7.9473 15 7 -2.3895 2.2660 9.5747 16 6 -3.3501 1.5519 10.2432 17 1 -3.7135 0.6209 9.8340 18 6 -3.8560 2.0261 11.4475 19 7 -3.4133 3.1587 11.9456 20 14 -5.1643 1.0529 12.3588 21 1 -4.6345 -0.2925 12.6971 22 1 -5.5329 1.7675 13.6072 23 1 -6.3650 0.9097 11.4967 24 6 1.4723 2.2037 -1.2158 25 6 2.6346 3.1241 -1.6641 26 6 3.8813 2.2312 -1.4460 27 6 3.5716 1.4600 -0.1464 28 1 -0.3634 -1.0248 -0.0772 29 1 -0.3634 0.5793 -0.8489 30 1 -0.3634 0.4456 0.9260 31 1 1.8933 -0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 4.3339 1.3796 2.1839 34 1 3.4584 0.4540 3.4270 35 1 3.1742 0.1180 1.7022 36 1 2.8662 2.7315 4.2578 37 1 1.5950 3.6128 3.3770 38 1 0.0129 1.7501 3.7967 39 1 1.2841 0.8689 4.6776 40 1 1.4411 2.7289 6.3103 41 1 0.1699 3.6096 5.4290 42 1 -0.1751 0.9428 6.6357 43 1 0.0377 2.6971 8.3037 44 1 -1.2331 3.5788 7.4228 45 1 -2.0633 3.1024 9.9420 46 1 -3.7667 3.4899 12.7860 47 1 1.2079 1.5078 -2.0120 48 1 0.6064 2.7976 -0.9237 49 1 2.6841 4.0159 -1.0394 50 1 2.5311 3.3929 -2.7154 51 1 4.7733 2.8453 -1.3219 52 1 4.0059 1.5398 -2.2795 53 1 4.0224 1.9684 0.7059 54 1 3.9516 0.4409 -0.2179 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268897902.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:38 Heat of formation + Delta-G solvation = -105.321282 kcal Electronic energy + Delta-G solvation = -29870.781125 eV Core-core repulsion = 25840.970455 eV Total energy + Delta-G solvation = -4029.810670 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.93176 -40.19111 -38.61640 -37.56843 -36.58856 -35.87520 -34.18688 -33.35284 -32.87108 -30.00498 -29.01858 -28.49028 -27.61571 -26.46885 -24.85994 -23.84997 -22.79878 -21.86316 -21.49909 -21.07071 -19.92842 -19.55622 -17.92228 -17.54116 -17.24326 -17.11213 -16.78918 -16.50585 -16.09920 -15.95004 -15.84644 -15.51591 -15.35278 -15.09286 -14.78590 -14.61406 -14.22687 -14.15914 -13.88703 -13.58270 -13.54743 -13.36739 -13.24765 -13.03052 -12.97073 -12.83189 -12.71496 -12.48137 -12.44458 -12.34250 -12.15874 -12.12884 -11.89147 -11.77688 -11.71343 -11.58130 -11.52392 -11.46323 -11.27560 -10.51645 -10.38698 -10.04236 -9.64712 -9.34962 -8.48287 -5.97554 1.38764 1.40566 1.51916 1.65768 2.02044 2.02780 2.28274 2.91841 3.18525 3.40109 3.49728 3.54757 3.69233 3.90042 4.02665 4.13665 4.15665 4.23873 4.25356 4.32182 4.34056 4.39827 4.44181 4.50008 4.51685 4.56168 4.60400 4.61371 4.68045 4.68542 4.73804 4.78439 4.87043 4.93487 5.01546 5.06287 5.07947 5.12567 5.16999 5.19981 5.22788 5.28076 5.32438 5.38769 5.40219 5.48312 5.61354 5.86998 6.08590 6.38404 6.42222 6.57916 7.10061 7.22034 7.53208 8.08689 8.68839 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.026928 B = 0.001651 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.573253 B =16956.566039 C =17285.209119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.106 4.106 3 C -0.078 4.078 4 C 0.518 3.482 5 O -0.584 6.584 6 N -0.615 5.615 7 C 0.058 3.942 8 C 0.121 3.879 9 C -0.118 4.118 10 C 0.067 3.933 11 N -0.690 5.690 12 C 0.066 3.934 13 C 0.435 3.565 14 O -0.625 6.625 15 N -0.571 5.571 16 C -0.338 4.338 17 H 0.078 0.922 18 C -0.013 4.013 19 N -0.919 5.919 20 Si 0.995 3.005 21 H -0.270 1.270 22 H -0.269 1.269 23 H -0.273 1.273 24 C -0.111 4.111 25 C -0.128 4.128 26 C -0.119 4.119 27 C -0.124 4.124 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.022 0.978 31 H 0.078 0.922 32 H 0.101 0.899 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.108 0.892 37 H 0.063 0.937 38 H 0.038 0.962 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.069 0.931 42 H 0.345 0.655 43 H 0.072 0.928 44 H 0.100 0.900 45 H 0.397 0.603 46 H 0.278 0.722 47 H 0.087 0.913 48 H 0.051 0.949 49 H 0.045 0.955 50 H 0.077 0.923 51 H 0.072 0.928 52 H 0.082 0.918 53 H 0.079 0.921 54 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.789 -2.514 -25.812 34.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.143 4.143 3 C -0.081 4.081 4 C 0.308 3.692 5 O -0.463 6.463 6 N -0.347 5.347 7 C -0.083 4.083 8 C -0.003 4.003 9 C -0.157 4.157 10 C -0.062 4.062 11 N -0.323 5.323 12 C -0.067 4.067 13 C 0.223 3.777 14 O -0.512 6.512 15 N -0.209 5.209 16 C -0.467 4.467 17 H 0.096 0.904 18 C -0.212 4.212 19 N -0.560 5.560 20 Si 0.818 3.182 21 H -0.195 1.195 22 H -0.193 1.193 23 H -0.199 1.199 24 C -0.149 4.149 25 C -0.166 4.166 26 C -0.157 4.157 27 C -0.161 4.161 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.041 0.959 31 H 0.096 0.904 32 H 0.120 0.880 33 H 0.101 0.899 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.126 0.874 37 H 0.082 0.918 38 H 0.057 0.943 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.087 0.913 42 H 0.163 0.837 43 H 0.090 0.910 44 H 0.118 0.882 45 H 0.231 0.769 46 H 0.088 0.912 47 H 0.106 0.894 48 H 0.070 0.930 49 H 0.064 0.936 50 H 0.095 0.905 51 H 0.091 0.909 52 H 0.101 0.899 53 H 0.098 0.902 54 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 21.492 -2.430 -26.272 34.030 hybrid contribution -0.419 0.179 1.549 1.615 sum 21.072 -2.250 -24.723 32.563 Atomic orbital electron populations 1.21828 0.96789 1.01967 1.00863 1.21750 0.95263 0.92980 1.04316 1.21476 0.98397 0.96521 0.91673 1.21155 0.81078 0.81041 0.85949 1.90668 1.30232 1.39017 1.86429 1.47917 1.36443 1.41245 1.09056 1.22544 0.89530 0.91591 1.04637 1.21388 0.98728 0.94921 0.85219 1.21738 0.98643 0.99711 0.95591 1.21902 0.92799 0.97463 0.94054 1.60021 1.44697 1.06015 1.21538 1.21526 0.96491 0.97653 0.90997 1.20892 0.86688 0.87627 0.82487 1.90484 1.64632 1.27137 1.68932 1.41920 1.36286 1.23149 1.19511 1.19650 1.17109 1.06068 1.03897 0.90366 1.26071 1.00519 0.97396 0.97261 1.69666 1.44278 1.20711 1.21319 0.84966 0.77746 0.78049 0.77420 1.19545 1.19296 1.19873 1.22408 0.98333 0.98285 0.95838 1.22514 0.95205 0.97633 1.01219 1.22385 0.97209 0.98303 0.97778 1.22752 0.91191 1.02978 0.99209 0.91382 0.92461 0.95859 0.90354 0.88020 0.89905 0.90067 0.89073 0.87424 0.91845 0.94266 0.91065 0.92770 0.91277 0.83676 0.91043 0.88203 0.76907 0.91215 0.89418 0.92986 0.93595 0.90454 0.90886 0.89901 0.90221 0.88084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.45 71.98 0.68 -2.14 16 2 C -0.11 -1.29 4.37 30.59 0.13 -1.15 16 3 C -0.08 -1.14 0.37 -52.21 -0.02 -1.16 16 4 C 0.52 11.50 5.46 87.66 0.48 11.98 16 5 O -0.58 -18.86 15.08 -3.03 -0.05 -18.90 16 6 N -0.61 -10.57 2.76 -846.73 -2.33 -12.90 16 7 C 0.06 0.49 8.66 127.77 1.11 1.60 16 8 C 0.12 2.26 5.38 86.38 0.46 2.72 16 9 C -0.12 -2.74 5.80 30.60 0.18 -2.56 16 10 C 0.07 1.67 5.69 86.30 0.49 2.16 16 11 N -0.69 -23.57 6.13 -517.95 -3.17 -26.74 16 12 C 0.07 2.38 6.17 85.56 0.53 2.91 16 13 C 0.44 21.67 7.82 87.66 0.69 22.35 16 14 O -0.63 -36.20 15.78 -3.07 -0.05 -36.25 16 15 N -0.57 -30.28 5.29 -306.98 -1.62 -31.91 16 16 C -0.34 -19.69 9.68 84.04 0.81 -18.88 16 17 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 18 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 19 N -0.92 -50.31 13.05 21.67 0.28 -50.03 16 20 Si 0.99 43.64 29.55 68.60 2.03 45.67 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 22 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 23 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 24 C -0.11 -1.82 4.60 31.67 0.15 -1.68 16 25 C -0.13 -1.72 6.91 31.89 0.22 -1.50 16 26 C -0.12 -0.99 6.83 31.67 0.22 -0.77 16 27 C -0.12 -1.03 4.27 31.32 0.13 -0.90 16 28 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 29 H 0.06 1.04 6.75 -2.38 -0.02 1.02 16 30 H 0.02 0.57 7.51 -2.39 -0.02 0.55 16 31 H 0.08 0.82 5.89 -2.38 -0.01 0.81 16 32 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.08 0.39 6.46 -2.38 -0.02 0.37 16 34 H 0.08 0.56 8.07 -2.39 -0.02 0.54 16 35 H 0.09 0.58 3.73 -2.38 -0.01 0.57 16 36 H 0.11 1.33 8.07 -2.39 -0.02 1.31 16 37 H 0.06 1.47 7.48 -2.39 -0.02 1.45 16 38 H 0.04 1.21 8.14 -2.39 -0.02 1.20 16 39 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 42 H 0.34 12.01 8.43 -89.69 -0.76 11.25 16 43 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 45 H 0.40 19.87 7.90 -92.71 -0.73 19.13 16 46 H 0.28 14.25 8.31 -92.71 -0.77 13.48 16 47 H 0.09 1.14 7.47 -2.39 -0.02 1.12 16 48 H 0.05 1.23 6.75 -2.39 -0.02 1.21 16 49 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 50 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 51 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 52 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 53 H 0.08 0.68 4.82 -2.39 -0.01 0.67 16 54 H 0.10 0.35 7.31 -2.39 -0.02 0.33 16 Total: -1.00 -78.04 415.71 1.23 -76.81 By element: Atomic # 1 Polarization: 42.07 SS G_CDS: -0.58 Total: 41.49 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: 6.72 Total: 12.76 kcal Atomic # 7 Polarization: -114.73 SS G_CDS: -6.85 Total: -121.57 kcal Atomic # 8 Polarization: -55.06 SS G_CDS: -0.09 Total: -55.15 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -78.04 1.23 -76.81 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268897902.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.508 kcal (2) G-P(sol) polarization free energy of solvation -78.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds