Wall clock time and date at job start Sat Apr 11 2020 05:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86807 * 119.99709 * 2 1 4 4 H 1.48498 * 109.46837 * 0.02562 * 3 2 1 5 5 H 1.48493 * 109.47251 * 239.99851 * 3 2 1 6 6 H 1.48504 * 109.46783 * 119.99743 * 3 2 1 7 7 C 1.38810 * 120.00303 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99791 * 179.97438 * 7 2 1 9 9 N 1.36934 * 120.00263 * 0.02562 * 7 2 1 10 10 C 1.46495 * 120.00015 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47002 * 174.91741 * 10 9 7 12 12 H 1.08995 * 109.87870 * 55.88928 * 11 10 9 13 13 C 1.54330 * 109.88016 * 294.87687 * 11 10 9 14 14 C 1.55162 * 102.94115 * 218.39191 * 13 11 10 15 15 C 1.54911 * 101.58320 * 35.50115 * 14 13 11 16 16 N 1.47023 * 109.88367 * 177.07200 * 11 10 9 17 17 C 1.34782 * 125.64294 * 298.32685 * 16 11 10 18 18 O 1.21282 * 119.99854 * 4.94710 * 17 16 11 19 19 C 1.50696 * 119.99648 * 184.93182 * 17 16 11 20 20 C 1.53000 * 109.46812 * 180.02562 * 19 17 16 21 21 C 1.53008 * 109.47021 * 180.02562 * 20 19 17 22 22 C 1.53000 * 109.47021 * 179.97438 * 21 20 19 23 23 N 1.46902 * 109.47113 * 179.97438 * 22 21 20 24 24 C 1.47009 * 110.99773 * 293.64012 * 23 22 21 25 25 C 1.53107 * 109.25451 * 177.60560 * 24 23 22 26 26 O 1.43018 * 109.25853 * 56.84758 * 25 24 23 27 27 C 1.43019 * 113.73775 * 301.33039 * 26 25 24 28 28 C 1.47013 * 110.99914 * 170.00202 * 23 22 21 29 29 H 0.97005 * 119.99364 * 179.97438 * 1 2 3 30 30 H 0.96999 * 119.99665 * 359.97438 * 9 7 2 31 31 H 1.09005 * 109.47326 * 294.91137 * 10 9 7 32 32 H 1.08995 * 109.47501 * 54.91197 * 10 9 7 33 33 H 1.09001 * 110.71882 * 336.74946 * 13 11 10 34 34 H 1.08996 * 110.72139 * 100.02774 * 13 11 10 35 35 H 1.08999 * 111.00103 * 153.57663 * 14 13 11 36 36 H 1.08995 * 111.00126 * 277.42465 * 14 13 11 37 37 H 1.08999 * 110.37013 * 81.82841 * 15 14 13 38 38 H 1.08999 * 110.36795 * 204.04614 * 15 14 13 39 39 H 1.08996 * 109.47963 * 300.00585 * 19 17 16 40 40 H 1.09001 * 109.46976 * 60.00775 * 19 17 16 41 41 H 1.09000 * 109.47500 * 300.00210 * 20 19 17 42 42 H 1.09001 * 109.47023 * 60.00429 * 20 19 17 43 43 H 1.09000 * 109.46882 * 300.00254 * 21 20 19 44 44 H 1.08993 * 109.46834 * 60.00192 * 21 20 19 45 45 H 1.09000 * 109.47505 * 300.00433 * 22 21 20 46 46 H 1.09001 * 109.47023 * 60.00095 * 22 21 20 47 47 H 1.08999 * 109.50757 * 297.53880 * 24 23 22 48 48 H 1.09001 * 109.51176 * 57.67354 * 24 23 22 49 49 H 1.08992 * 109.50668 * 296.91370 * 25 24 23 50 50 H 1.08996 * 109.50467 * 176.78061 * 25 24 23 51 51 H 1.08998 * 109.50489 * 298.73296 * 27 26 25 52 52 H 1.09000 * 109.54125 * 178.62733 * 27 26 25 53 53 H 1.08999 * 109.50907 * 302.32704 * 28 23 22 54 54 H 1.09001 * 109.50684 * 62.46128 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2850 2.7464 0.0006 5 1 3.1038 1.6966 -1.2124 6 1 3.1038 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 7 1.3257 -2.3880 0.0005 10 6 2.0583 -3.6567 0.0017 11 6 1.0689 -4.8168 0.1292 12 1 0.3285 -4.7619 -0.6688 13 6 0.3662 -4.7587 1.5020 14 6 0.2648 -6.2539 1.9041 15 6 1.5871 -6.8208 1.3296 16 7 1.7883 -6.0972 0.0610 17 6 2.5114 -6.5369 -0.9880 18 8 2.6831 -5.8185 -1.9499 19 6 3.1067 -7.9211 -0.9654 20 6 3.8733 -8.1678 -2.2663 21 6 4.4773 -9.5735 -2.2437 22 6 5.2433 -9.8204 -3.5449 23 7 5.8237 -11.1697 -3.5229 24 6 6.8613 -11.2801 -2.4874 25 6 7.3958 -12.7146 -2.4591 26 8 7.8870 -13.0606 -3.7569 27 6 6.9023 -12.9647 -4.7896 28 6 6.3628 -11.5328 -4.8415 29 1 -0.4849 -0.8401 -0.0004 30 1 0.3557 -2.3881 0.0005 31 1 2.6156 -3.7553 -0.9299 32 1 2.7509 -3.6756 0.8431 33 1 0.9704 -4.2060 2.2215 34 1 -0.6256 -4.3162 1.4091 35 1 0.2300 -6.3655 2.9878 36 1 -0.5988 -6.7265 1.4362 37 1 2.4129 -6.6243 2.0134 38 1 1.4933 -7.8912 1.1469 39 1 3.7887 -8.0097 -0.1198 40 1 2.3094 -8.6580 -0.8679 41 1 3.1916 -8.0792 -3.1122 42 1 4.6706 -7.4309 -2.3635 43 1 5.1588 -9.6625 -1.3978 44 1 3.6797 -10.3100 -2.1468 45 1 4.5614 -9.7314 -4.3906 46 1 6.0409 -9.0838 -3.6423 47 1 7.6762 -10.5925 -2.7139 48 1 6.4340 -11.0317 -1.5159 49 1 6.5928 -13.3967 -2.1800 50 1 8.2049 -12.7872 -1.7324 51 1 6.0849 -13.6542 -4.5783 52 1 7.3538 -13.2185 -5.7487 53 1 5.5716 -11.4689 -5.5885 54 1 7.1698 -10.8492 -5.1057 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270150400.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:50:46 Heat of formation + Delta-G solvation = -98.317880 kcal Electronic energy + Delta-G solvation = -29491.315228 eV Core-core repulsion = 25461.808248 eV Total energy + Delta-G solvation = -4029.506980 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.32849 -40.55235 -38.87638 -37.46376 -36.78207 -35.18138 -33.58133 -32.67264 -32.16837 -30.91083 -30.02564 -27.73309 -26.55420 -25.26013 -25.02363 -24.34050 -23.24758 -22.12098 -21.60775 -21.34137 -20.12601 -19.31152 -18.08878 -17.69655 -17.50270 -17.20372 -16.82711 -16.72346 -16.16402 -15.99091 -15.86416 -15.74134 -15.48505 -15.24949 -15.10720 -15.07636 -14.99784 -14.23203 -13.94836 -13.73668 -13.67660 -13.40881 -13.22889 -13.06972 -12.77856 -12.70099 -12.63587 -12.46798 -12.32630 -12.27734 -12.12339 -11.98453 -11.90939 -11.87974 -11.70370 -11.59838 -11.36803 -11.34082 -11.05377 -10.81940 -10.65497 -9.72175 -9.45754 -9.19798 -8.48158 -5.41869 1.53506 1.61026 1.64382 1.81460 1.91408 2.66232 2.70103 2.95661 3.31377 3.42288 3.58262 3.75646 3.78321 3.83714 3.90918 3.92122 3.96737 4.00791 4.14537 4.18746 4.21612 4.24966 4.28121 4.37715 4.41550 4.45109 4.54328 4.56749 4.63056 4.67965 4.71258 4.75797 4.78679 4.80394 4.85398 4.87678 4.93036 4.94699 4.99895 5.03915 5.04294 5.08773 5.28604 5.29445 5.35987 5.41994 5.49387 5.92281 5.93060 6.16951 6.41950 6.55508 7.00086 7.16753 7.89537 8.01958 9.03635 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.016339 B = 0.001759 C = 0.001641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1713.229895 B =15918.002925 C =17054.437631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.099 4.099 3 Si 1.131 2.869 4 H -0.286 1.286 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.341 4.341 8 H 0.057 0.943 9 N -0.748 5.748 10 C 0.159 3.841 11 C 0.135 3.865 12 H 0.048 0.952 13 C -0.119 4.119 14 C -0.119 4.119 15 C 0.095 3.905 16 N -0.615 5.615 17 C 0.510 3.490 18 O -0.591 6.591 19 C -0.118 4.118 20 C -0.100 4.100 21 C -0.099 4.099 22 C 0.054 3.946 23 N -0.540 5.540 24 C 0.013 3.987 25 C 0.061 3.939 26 O -0.409 6.409 27 C 0.063 3.937 28 C 0.014 3.986 29 H 0.244 0.756 30 H 0.363 0.637 31 H 0.000 1.000 32 H 0.016 0.984 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.111 0.889 36 H 0.087 0.913 37 H 0.079 0.921 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.125 0.875 41 H 0.053 0.947 42 H 0.045 0.955 43 H 0.075 0.925 44 H 0.084 0.916 45 H 0.075 0.925 46 H 0.024 0.976 47 H 0.030 0.970 48 H 0.104 0.896 49 H 0.066 0.934 50 H 0.111 0.889 51 H 0.065 0.935 52 H 0.111 0.889 53 H 0.096 0.904 54 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.656 -32.613 0.404 34.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.291 4.291 3 Si 0.954 3.046 4 H -0.211 1.211 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.473 4.473 8 H 0.075 0.925 9 N -0.393 5.393 10 C 0.031 3.969 11 C 0.031 3.969 12 H 0.066 0.934 13 C -0.158 4.158 14 C -0.157 4.157 15 C -0.026 4.026 16 N -0.349 5.349 17 C 0.301 3.699 18 O -0.472 6.472 19 C -0.157 4.157 20 C -0.139 4.139 21 C -0.137 4.137 22 C -0.074 4.074 23 N -0.265 5.265 24 C -0.115 4.115 25 C -0.015 4.015 26 O -0.329 6.329 27 C -0.014 4.014 28 C -0.114 4.114 29 H 0.054 0.946 30 H 0.195 0.805 31 H 0.018 0.982 32 H 0.034 0.966 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.130 0.870 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.135 0.865 39 H 0.136 0.864 40 H 0.143 0.857 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.094 0.906 44 H 0.102 0.898 45 H 0.093 0.907 46 H 0.042 0.958 47 H 0.048 0.952 48 H 0.122 0.878 49 H 0.084 0.916 50 H 0.129 0.871 51 H 0.083 0.917 52 H 0.129 0.871 53 H 0.114 0.886 54 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 9.721 -31.059 -0.082 32.545 hybrid contribution 0.172 -0.175 -0.677 0.720 sum 9.894 -31.235 -0.759 32.773 Atomic orbital electron populations 1.70993 1.06912 1.27821 1.55756 1.27320 0.97195 1.04559 0.99987 0.82613 0.73438 0.71411 0.77129 1.21123 1.20901 1.19958 1.20333 0.92085 0.87191 1.47654 0.92454 1.42330 1.04702 1.01514 1.90746 1.20881 0.94068 0.85209 0.96747 1.21513 0.92835 0.83576 0.99014 0.93384 1.22575 1.00312 0.99242 0.93645 1.22822 0.97434 0.92333 1.03097 1.22681 0.98310 0.98173 0.83392 1.48753 1.50329 1.18810 1.17004 1.21514 0.77286 0.90545 0.80578 1.90729 1.60796 1.59709 1.35932 1.21670 1.01984 0.90901 1.01153 1.21233 0.99077 0.97072 0.96492 1.21460 1.00125 0.95194 0.96919 1.22140 0.97756 0.87802 0.99672 1.62278 1.32381 1.26680 1.05188 1.22913 0.93296 0.97920 0.97395 1.22810 1.00074 0.93909 0.84730 1.87960 1.38161 1.89025 1.17705 1.22773 0.91919 0.94778 0.91881 1.22846 0.99279 0.97567 0.91708 0.94580 0.80484 0.98166 0.96557 0.91560 0.90740 0.87040 0.89470 0.90228 0.86492 0.86424 0.85725 0.92821 0.93607 0.90621 0.89760 0.90660 0.95767 0.95182 0.87831 0.91617 0.87062 0.91708 0.87097 0.88587 0.95031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -62.46 13.70 21.65 0.30 -62.16 16 2 C -0.10 -6.06 5.50 84.86 0.47 -5.59 16 3 Si 1.13 54.29 29.92 68.60 2.05 56.34 16 4 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 5 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 6 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 7 C -0.34 -20.92 9.99 84.03 0.84 -20.08 16 8 H 0.06 3.50 7.83 -2.91 -0.02 3.48 16 9 N -0.75 -41.68 5.38 -343.46 -1.85 -43.53 16 10 C 0.16 7.55 5.63 86.38 0.49 8.04 16 11 C 0.14 4.91 2.97 45.34 0.13 5.04 16 12 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 13 C -0.12 -3.45 6.13 31.79 0.19 -3.26 16 14 C -0.12 -2.03 7.09 31.99 0.23 -1.80 16 15 C 0.10 1.57 6.74 86.86 0.59 2.16 16 16 N -0.61 -17.27 3.06 -788.03 -2.42 -19.69 16 17 C 0.51 15.30 7.67 87.65 0.67 15.97 16 18 O -0.59 -24.90 14.80 -3.04 -0.04 -24.94 16 19 C -0.12 -1.99 4.63 29.85 0.14 -1.85 16 20 C -0.10 -1.89 4.50 30.60 0.14 -1.75 16 21 C -0.10 -1.27 5.15 30.60 0.16 -1.11 16 22 C 0.05 0.81 4.96 86.30 0.43 1.24 16 23 N -0.54 -7.65 4.73 -895.20 -4.23 -11.88 16 24 C 0.01 0.16 5.44 86.32 0.47 0.63 16 25 C 0.06 0.72 7.01 72.02 0.50 1.22 16 26 O -0.41 -6.64 10.83 -148.98 -1.61 -8.25 16 27 C 0.06 0.76 7.01 72.02 0.50 1.27 16 28 C 0.01 0.19 5.64 86.31 0.49 0.68 16 29 H 0.24 15.68 6.77 -92.70 -0.63 15.05 16 30 H 0.36 20.35 6.38 -92.71 -0.59 19.76 16 31 H 0.00 0.02 6.61 -2.38 -0.02 0.01 16 32 H 0.02 0.78 8.07 -2.39 -0.02 0.77 16 33 H 0.07 2.13 7.80 -2.39 -0.02 2.11 16 34 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.08 1.19 8.14 -2.39 -0.02 1.18 16 38 H 0.12 1.02 7.48 -2.39 -0.02 1.00 16 39 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.12 1.34 7.95 -2.39 -0.02 1.32 16 41 H 0.05 1.20 8.10 -2.39 -0.02 1.18 16 42 H 0.05 1.08 8.10 -2.39 -0.02 1.06 16 43 H 0.08 0.80 6.52 -2.39 -0.02 0.78 16 44 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.07 1.16 8.04 -2.39 -0.02 1.14 16 46 H 0.02 0.42 8.12 -2.39 -0.02 0.40 16 47 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 48 H 0.10 0.99 6.38 -2.39 -0.02 0.98 16 49 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 51 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 52 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 53 H 0.10 1.07 8.09 -2.39 -0.02 1.05 16 54 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -84.46 417.86 -0.96 -85.42 By element: Atomic # 1 Polarization: 27.49 SS G_CDS: 0.41 Total: 27.89 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: 6.43 Total: 0.80 kcal Atomic # 7 Polarization: -129.07 SS G_CDS: -8.20 Total: -137.26 kcal Atomic # 8 Polarization: -31.53 SS G_CDS: -1.66 Total: -33.19 kcal Atomic # 14 Polarization: 54.29 SS G_CDS: 2.05 Total: 56.34 kcal Total: -84.46 -0.96 -85.42 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270150400.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.899 kcal (2) G-P(sol) polarization free energy of solvation -84.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds