Wall clock time and date at job start Sat Apr 11 2020 05:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46901 * 110.99729 * 2 1 4 4 C 1.53000 * 109.47209 * 293.95333 * 3 2 1 5 5 N 1.46501 * 109.46929 * 180.02562 * 4 3 2 6 6 C 1.46500 * 120.00174 * 270.00165 * 5 4 3 7 7 C 1.34777 * 119.99990 * 89.99621 * 5 4 3 8 8 O 1.21280 * 120.00186 * 0.02562 * 7 5 4 9 9 C 1.50701 * 119.99923 * 179.97438 * 7 5 4 10 10 H 1.09006 * 110.43652 * 57.46232 * 9 7 5 11 11 C 1.54887 * 110.48726 * 294.78220 * 9 7 5 12 12 C 1.54975 * 102.77628 * 203.40490 * 11 9 7 13 13 C 1.54261 * 104.15832 * 37.88686 * 12 11 9 14 14 C 1.53006 * 110.03063 * 217.13902 * 13 12 11 15 15 C 1.52998 * 110.03513 * 95.75442 * 13 12 11 16 16 C 1.53877 * 106.64292 * 336.44478 * 13 12 11 17 17 C 1.46893 * 111.00046 * 123.95674 * 2 1 3 18 18 C 1.50707 * 109.47249 * 66.04483 * 17 2 1 19 19 O 1.21297 * 119.99774 * 0.02562 * 18 17 2 20 20 N 1.34776 * 119.99809 * 179.97438 * 18 17 2 21 21 C 1.37098 * 119.99582 * 180.02562 * 20 18 17 22 22 H 1.08002 * 120.00216 * 0.02562 * 21 20 18 23 23 C 1.38950 * 119.99945 * 180.02562 * 21 20 18 24 24 N 1.31416 * 119.99858 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00034 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47154 * 89.99983 * 25 23 21 27 27 H 1.48502 * 109.46721 * 209.99759 * 25 23 21 28 28 H 1.48495 * 109.46936 * 329.99559 * 25 23 21 29 29 H 1.09003 * 109.47258 * 60.00120 * 1 2 3 30 30 H 1.09002 * 109.46905 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47509 * 299.99620 * 1 2 3 32 32 H 1.09004 * 109.46744 * 173.95570 * 3 2 1 33 33 H 1.08997 * 109.47032 * 53.95962 * 3 2 1 34 34 H 1.08991 * 109.47295 * 60.00437 * 4 3 2 35 35 H 1.09002 * 109.46973 * 299.99670 * 4 3 2 36 36 H 1.08998 * 109.47180 * 270.00393 * 6 5 4 37 37 H 1.09002 * 109.46727 * 29.99788 * 6 5 4 38 38 H 1.08998 * 109.47778 * 149.99840 * 6 5 4 39 39 H 1.09005 * 110.75389 * 321.68870 * 11 9 7 40 40 H 1.08998 * 110.75928 * 84.87840 * 11 9 7 41 41 H 1.08996 * 110.47209 * 279.23426 * 12 11 9 42 42 H 1.09001 * 110.53100 * 156.56626 * 12 11 9 43 43 H 1.09001 * 109.47002 * 297.90527 * 14 13 12 44 44 H 1.08993 * 109.46955 * 57.90964 * 14 13 12 45 45 H 1.09000 * 109.47050 * 177.90793 * 14 13 12 46 46 H 1.08998 * 109.47554 * 182.08642 * 15 13 12 47 47 H 1.09000 * 109.47092 * 302.09446 * 15 13 12 48 48 H 1.09001 * 109.46666 * 62.09117 * 15 13 12 49 49 H 1.08998 * 110.03190 * 119.26423 * 16 13 12 50 50 H 1.08998 * 110.03276 * 240.69218 * 16 13 12 51 51 H 1.08994 * 109.47343 * 186.04646 * 17 2 1 52 52 H 1.09004 * 109.47317 * 306.05035 * 17 2 1 53 53 H 0.96998 * 120.00178 * 0.02562 * 20 18 17 54 54 H 0.96996 * 119.99834 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6314 2.0575 -1.3183 5 7 2.1569 3.4250 -1.3184 6 6 1.3375 4.5247 -0.8032 7 6 3.3943 3.6714 -1.7925 8 8 4.0725 2.7611 -2.2194 9 6 3.9346 5.0782 -1.7932 10 1 3.9288 5.4886 -0.7834 11 6 3.1108 5.9748 -2.7505 12 6 4.1047 7.1132 -3.0940 13 6 5.4689 6.4020 -3.2064 14 6 6.5740 7.2954 -2.6393 15 6 5.7660 6.0661 -4.6692 16 6 5.3609 5.1084 -2.3801 17 6 1.9954 -0.7660 1.1375 18 6 1.6369 -2.2205 0.9727 19 8 1.0053 -2.5833 0.0028 20 7 2.0189 -3.1182 1.9026 21 6 1.6932 -4.4414 1.7524 22 1 1.1308 -4.7645 0.8888 23 6 2.0865 -5.3669 2.7113 24 7 2.7712 -4.9739 3.7619 25 14 1.6433 -7.1700 2.5063 26 1 2.7208 -7.8622 1.7548 27 1 1.4908 -7.7973 3.8437 28 1 0.3659 -7.2836 1.7577 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8900 32 1 3.0797 1.3444 0.1082 33 1 1.5611 1.9273 0.8310 34 1 0.5472 2.0845 -1.4265 35 1 2.0658 1.5016 -2.1492 36 1 0.7446 4.9470 -1.6145 37 1 0.6730 4.1490 -0.0251 38 1 1.9850 5.2962 -0.3867 39 1 2.8294 5.4247 -3.6485 40 1 2.2275 6.3679 -2.2473 41 1 4.1257 7.8547 -2.2954 42 1 3.8385 7.5799 -4.0424 43 1 6.6344 8.2137 -3.2234 44 1 6.3473 7.5391 -1.6014 45 1 7.5276 6.7697 -2.6891 46 1 6.7136 5.5315 -4.7341 47 1 4.9675 5.4402 -5.0676 48 1 5.8284 6.9876 -5.2480 49 1 5.5193 4.2414 -3.0213 50 1 6.0958 5.1171 -1.5751 51 1 3.0797 -0.6611 1.1756 52 1 1.5610 -0.3874 2.0628 53 1 2.5242 -2.8281 2.6780 54 1 3.0454 -5.6199 4.4315 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272104628.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:43 Heat of formation + Delta-G solvation = -101.024346 kcal Electronic energy + Delta-G solvation = -29963.243695 eV Core-core repulsion = 25933.619354 eV Total energy + Delta-G solvation = -4029.624341 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.49794 -40.40640 -39.29130 -38.07523 -36.50234 -35.83760 -33.49908 -33.28698 -31.03699 -29.83054 -29.18316 -28.14679 -27.59950 -27.11134 -26.20179 -24.89884 -22.89308 -21.86882 -21.02844 -20.02687 -19.84019 -19.53694 -18.28567 -17.89477 -17.40228 -16.74599 -16.57169 -16.38693 -16.22769 -15.91931 -15.65749 -15.30087 -15.13732 -14.94003 -14.67631 -14.38354 -14.13322 -14.05948 -14.00814 -13.80875 -13.75496 -13.46465 -13.12776 -13.02645 -12.99131 -12.94583 -12.63929 -12.56493 -12.53174 -12.42217 -12.34243 -12.12693 -12.06702 -11.85932 -11.61348 -11.47243 -11.41064 -11.39403 -11.26625 -10.72738 -10.34723 -10.01570 -9.70531 -9.22661 -8.47314 -5.96164 1.37167 1.40567 1.53578 1.61818 1.92638 2.03302 2.28751 2.84025 3.19066 3.39697 3.44348 3.53894 3.74796 3.88300 4.01144 4.11949 4.19471 4.27419 4.29333 4.33103 4.35345 4.40277 4.45010 4.47700 4.54523 4.59371 4.62241 4.64351 4.69992 4.70988 4.82001 4.83854 4.90206 4.93712 4.96939 5.01168 5.07069 5.14645 5.17482 5.20384 5.21628 5.35491 5.40093 5.41458 5.48167 5.53354 5.59235 5.83927 6.04620 6.17304 6.40938 6.59491 7.11796 7.19461 7.54666 8.10593 8.70223 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.023081 B = 0.001794 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.812527 B =15604.528614 C =16176.489514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.541 5.541 3 C 0.054 3.946 4 C 0.125 3.875 5 N -0.612 5.612 6 C 0.068 3.932 7 C 0.509 3.491 8 O -0.587 6.587 9 C -0.105 4.105 10 H 0.124 0.876 11 C -0.108 4.108 12 C -0.108 4.108 13 C -0.071 4.071 14 C -0.137 4.137 15 C -0.139 4.139 16 C -0.107 4.107 17 C 0.060 3.940 18 C 0.442 3.558 19 O -0.613 6.613 20 N -0.574 5.574 21 C -0.333 4.333 22 H 0.079 0.921 23 C -0.015 4.015 24 N -0.921 5.921 25 Si 0.995 3.005 26 H -0.273 1.273 27 H -0.269 1.269 28 H -0.272 1.272 29 H 0.083 0.917 30 H 0.055 0.945 31 H 0.036 0.964 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.099 0.901 35 H 0.057 0.943 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.053 0.947 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.046 0.954 46 H 0.045 0.955 47 H 0.042 0.958 48 H 0.067 0.933 49 H 0.052 0.948 50 H 0.066 0.934 51 H 0.098 0.902 52 H 0.072 0.928 53 H 0.395 0.605 54 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.734 32.329 -7.765 33.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.266 5.266 3 C -0.074 4.074 4 C 0.001 3.999 5 N -0.344 5.344 6 C -0.073 4.073 7 C 0.298 3.702 8 O -0.467 6.467 9 C -0.126 4.126 10 H 0.141 0.859 11 C -0.146 4.146 12 C -0.145 4.145 13 C -0.071 4.071 14 C -0.194 4.194 15 C -0.196 4.196 16 C -0.145 4.145 17 C -0.071 4.071 18 C 0.229 3.771 19 O -0.499 6.499 20 N -0.212 5.212 21 C -0.462 4.462 22 H 0.097 0.903 23 C -0.214 4.214 24 N -0.562 5.562 25 Si 0.818 3.182 26 H -0.198 1.198 27 H -0.194 1.194 28 H -0.197 1.197 29 H 0.102 0.898 30 H 0.074 0.926 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.117 0.883 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.113 0.887 39 H 0.072 0.928 40 H 0.120 0.880 41 H 0.106 0.894 42 H 0.095 0.905 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.066 0.934 46 H 0.064 0.936 47 H 0.062 0.938 48 H 0.086 0.914 49 H 0.070 0.930 50 H 0.084 0.916 51 H 0.116 0.884 52 H 0.090 0.910 53 H 0.229 0.771 54 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.880 31.294 -8.895 32.545 hybrid contribution 0.118 -1.148 1.087 1.586 sum 0.998 30.145 -7.808 31.156 Atomic orbital electron populations 1.22486 0.86123 1.02564 1.00992 1.61376 1.09438 1.13068 1.42732 1.22357 0.99648 0.87363 0.98056 1.21257 0.99723 0.81954 0.96951 1.47933 1.15836 1.08564 1.62085 1.22229 0.95904 0.88960 1.00234 1.21344 0.80895 0.91992 0.75930 1.90708 1.58926 1.48497 1.48567 1.22191 0.96773 0.90534 1.03103 0.85862 1.22570 0.98542 0.95583 0.97897 1.22496 0.92252 0.96923 1.02828 1.21203 0.96728 0.94255 0.94872 1.21898 0.97207 0.99107 1.01170 1.21907 1.00742 1.01436 0.95512 1.22234 0.94896 0.97967 0.99448 1.21695 1.01543 0.90492 0.93371 1.20707 0.83801 0.88657 0.83945 1.90458 1.45183 1.81401 1.32831 1.41933 1.50019 1.07086 1.22144 1.19670 1.34473 0.83982 1.08081 0.90274 1.26068 0.96256 1.04433 0.94655 1.69679 1.38108 1.37201 1.11222 0.84906 0.78632 0.76737 0.77915 1.19820 1.19373 1.19673 0.89827 0.92587 0.94524 0.92457 0.92703 0.88305 0.92391 0.90545 0.89957 0.88731 0.92779 0.87969 0.89393 0.90550 0.91686 0.91751 0.93440 0.93565 0.93847 0.91390 0.92960 0.91567 0.88393 0.91046 0.77083 0.91301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 8.96 127.69 1.14 1.96 16 2 N -0.54 -18.77 4.50 -927.05 -4.17 -22.94 16 3 C 0.05 1.47 5.28 86.30 0.46 1.92 16 4 C 0.12 3.01 5.33 86.38 0.46 3.47 16 5 N -0.61 -11.54 2.87 -846.77 -2.43 -13.97 16 6 C 0.07 0.58 8.98 127.77 1.15 1.72 16 7 C 0.51 11.88 7.04 87.66 0.62 12.50 16 8 O -0.59 -20.31 15.00 -3.03 -0.05 -20.35 16 9 C -0.11 -1.54 2.31 -10.47 -0.02 -1.57 16 10 H 0.12 1.21 7.30 -2.38 -0.02 1.19 16 11 C -0.11 -1.07 5.58 31.91 0.18 -0.89 16 12 C -0.11 -0.89 5.91 31.70 0.19 -0.70 16 13 C -0.07 -0.87 0.94 -51.46 -0.05 -0.92 16 14 C -0.14 -1.36 8.16 71.98 0.59 -0.77 16 15 C -0.14 -1.94 8.14 71.98 0.59 -1.35 16 16 C -0.11 -1.90 5.49 31.32 0.17 -1.72 16 17 C 0.06 2.26 5.45 85.56 0.47 2.73 16 18 C 0.44 22.05 7.47 87.66 0.66 22.70 16 19 O -0.61 -35.01 13.91 -3.08 -0.04 -35.05 16 20 N -0.57 -30.63 5.29 -306.97 -1.62 -32.26 16 21 C -0.33 -19.41 9.68 84.04 0.81 -18.60 16 22 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 23 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 24 N -0.92 -50.82 13.05 21.66 0.28 -50.54 16 25 Si 0.99 43.95 29.55 68.60 2.03 45.97 16 26 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 27 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 28 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 29 H 0.08 2.19 6.47 -2.39 -0.02 2.17 16 30 H 0.06 2.26 5.83 -2.39 -0.01 2.25 16 31 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.06 1.75 7.93 -2.38 -0.02 1.73 16 33 H 0.05 1.21 8.12 -2.39 -0.02 1.19 16 34 H 0.10 1.93 6.48 -2.39 -0.02 1.92 16 35 H 0.06 1.84 7.42 -2.39 -0.02 1.83 16 36 H 0.08 0.42 7.66 -2.39 -0.02 0.40 16 37 H 0.08 0.58 8.07 -2.39 -0.02 0.56 16 38 H 0.09 0.42 6.01 -2.39 -0.01 0.40 16 39 H 0.05 0.75 8.05 -2.38 -0.02 0.73 16 40 H 0.10 0.47 6.43 -2.39 -0.02 0.45 16 41 H 0.09 0.45 7.84 -2.39 -0.02 0.44 16 42 H 0.08 0.56 7.84 -2.39 -0.02 0.54 16 43 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.06 0.54 8.13 -2.39 -0.02 0.52 16 45 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 46 H 0.05 0.71 8.14 -2.39 -0.02 0.70 16 47 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 49 H 0.05 1.30 6.38 -2.39 -0.02 1.29 16 50 H 0.07 1.14 7.67 -2.39 -0.02 1.13 16 51 H 0.10 3.46 7.93 -2.39 -0.02 3.45 16 52 H 0.07 2.33 8.12 -2.38 -0.02 2.31 16 53 H 0.40 20.06 7.90 -92.71 -0.73 19.33 16 54 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -77.54 417.63 2.01 -75.53 By element: Atomic # 1 Polarization: 33.32 SS G_CDS: 0.15 Total: 33.47 kcal Atomic # 6 Polarization: 12.28 SS G_CDS: 7.87 Total: 20.15 kcal Atomic # 7 Polarization: -111.77 SS G_CDS: -7.94 Total: -119.71 kcal Atomic # 8 Polarization: -55.32 SS G_CDS: -0.09 Total: -55.40 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -77.54 2.01 -75.53 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272104628.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.495 kcal (2) G-P(sol) polarization free energy of solvation -77.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds