Wall clock time and date at job start Sat Apr 11 2020 05:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86804 * 120.00001 * 2 1 4 4 H 1.48492 * 109.46976 * 271.94186 * 3 2 1 5 5 H 1.48493 * 109.46977 * 31.94359 * 3 2 1 6 6 H 1.48498 * 109.47012 * 151.94263 * 3 2 1 7 7 C 1.38815 * 120.00202 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99762 * 339.48870 * 7 2 1 9 9 N 1.36934 * 120.00260 * 159.48673 * 7 2 1 10 10 C 1.47080 * 120.87954 * 333.51976 * 9 7 2 11 11 C 1.53247 * 108.51951 * 231.16398 * 10 9 7 12 12 N 1.46898 * 109.34004 * 306.16671 * 11 10 9 13 13 C 1.46892 * 111.00103 * 187.25384 * 12 11 10 14 14 C 1.53001 * 109.47298 * 170.00490 * 13 12 11 15 15 C 1.53001 * 109.46984 * 180.02562 * 14 13 12 16 16 C 1.53002 * 109.46888 * 179.97438 * 15 14 13 17 17 C 1.53004 * 109.47201 * 179.97438 * 16 15 14 18 18 N 1.46502 * 109.46902 * 180.02562 * 17 16 15 19 19 C 1.34781 * 119.99468 * 179.72805 * 18 17 16 20 20 O 1.21277 * 120.00163 * 0.02562 * 19 18 17 21 21 C 1.50699 * 119.99587 * 180.02562 * 19 18 17 22 22 H 1.08997 * 109.87315 * 304.29843 * 21 19 18 23 23 C 1.54103 * 109.87729 * 65.30951 * 21 19 18 24 24 C 1.54812 * 104.18886 * 121.45271 * 23 21 19 25 25 C 1.54992 * 102.09112 * 20.87750 * 24 23 21 26 26 O 1.43748 * 109.87585 * 183.29066 * 21 19 18 27 27 C 1.46905 * 111.26544 * 63.10620 * 12 11 10 28 28 C 1.47081 * 120.88239 * 153.50006 * 9 7 2 29 29 H 0.96994 * 120.00337 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.63138 * 111.45706 * 10 9 7 31 31 H 1.09000 * 109.63115 * 350.87171 * 10 9 7 32 32 H 1.09006 * 109.48719 * 186.20925 * 11 10 9 33 33 H 1.08997 * 109.51217 * 66.14556 * 11 10 9 34 34 H 1.09001 * 109.47151 * 50.00003 * 13 12 11 35 35 H 1.09007 * 109.47312 * 290.00228 * 13 12 11 36 36 H 1.08996 * 109.47005 * 59.99788 * 14 13 12 37 37 H 1.08997 * 109.46859 * 300.00241 * 14 13 12 38 38 H 1.09002 * 109.47347 * 60.00283 * 15 14 13 39 39 H 1.08997 * 109.47352 * 299.99735 * 15 14 13 40 40 H 1.09008 * 109.46995 * 60.00085 * 16 15 14 41 41 H 1.08997 * 109.47220 * 300.00198 * 16 15 14 42 42 H 1.09003 * 109.46262 * 60.00284 * 17 16 15 43 43 H 1.08996 * 109.47039 * 300.00387 * 17 16 15 44 44 H 0.96993 * 120.00039 * 0.02562 * 18 17 16 45 45 H 1.09000 * 110.48574 * 240.12779 * 23 21 19 46 46 H 1.08998 * 110.48938 * 2.77459 * 23 21 19 47 47 H 1.08995 * 110.90556 * 139.07988 * 24 23 21 48 48 H 1.08997 * 110.90309 * 262.64560 * 24 23 21 49 49 H 1.08998 * 110.62238 * 81.47982 * 25 24 23 50 50 H 1.09006 * 110.61853 * 204.31690 * 25 24 23 51 51 H 1.09002 * 109.48921 * 56.85511 * 27 12 11 52 52 H 1.08996 * 109.49039 * 176.93242 * 27 12 11 53 53 H 1.09001 * 109.62812 * 248.54346 * 28 9 7 54 54 H 1.08997 * 109.62694 * 9.12685 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4566 2.0701 -1.3992 5 1 1.4688 2.6404 0.7407 6 1 3.5677 1.4287 0.6585 7 6 2.0103 -1.2021 -0.0005 8 1 1.5216 -2.1080 0.3268 9 7 3.3145 -1.2396 -0.4161 10 6 3.8316 -0.2465 -1.3699 11 6 4.5288 -0.9887 -2.5152 12 7 5.5375 -1.9013 -1.9607 13 6 6.3458 -2.5043 -3.0288 14 6 7.5340 -3.2456 -2.4126 15 6 8.3762 -3.8730 -3.5253 16 6 9.5648 -4.6137 -2.9091 17 6 10.4067 -5.2418 -4.0217 18 7 11.5443 -5.9515 -3.4316 19 6 12.4254 -6.5909 -4.2264 20 8 12.2766 -6.5782 -5.4299 21 6 13.5953 -7.3215 -3.6194 22 1 14.1722 -6.6413 -2.9928 23 6 13.0914 -8.5097 -2.7774 24 6 13.7685 -9.7446 -3.4201 25 6 14.9660 -9.1054 -4.1685 26 8 14.4313 -7.8553 -4.6599 27 6 4.9167 -2.9358 -1.1225 28 6 4.2355 -2.2736 0.0798 29 1 -0.4850 0.8400 0.0004 30 1 4.5460 0.4059 -0.8679 31 1 3.0064 0.3453 -1.7659 32 1 5.0134 -0.2679 -3.1739 33 1 3.7925 -1.5602 -3.0802 34 1 6.7110 -1.7217 -3.6938 35 1 5.7339 -3.2062 -3.5954 36 1 7.1688 -4.0281 -1.7476 37 1 8.1459 -2.5437 -1.8461 38 1 8.7415 -3.0901 -4.1899 39 1 7.7646 -4.5748 -4.0922 40 1 9.1998 -5.3967 -2.2442 41 1 10.1763 -3.9117 -2.3424 42 1 10.7715 -4.4591 -4.6868 43 1 9.7948 -5.9439 -4.5880 44 1 11.6611 -5.9650 -2.4688 45 1 13.4036 -8.4008 -1.7387 46 1 12.0065 -8.5916 -2.8440 47 1 14.1141 -10.4405 -2.6558 48 1 13.0928 -10.2397 -4.1175 49 1 15.7940 -8.9235 -3.4833 50 1 15.2855 -9.7406 -4.9947 51 1 4.1748 -3.4803 -1.7066 52 1 5.6826 -3.6273 -0.7712 53 1 4.9887 -1.8160 0.7212 54 1 3.6771 -3.0219 0.6423 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274872453.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:23 Heat of formation + Delta-G solvation = -87.141409 kcal Electronic energy + Delta-G solvation = -28872.328904 eV Core-core repulsion = 24843.306573 eV Total energy + Delta-G solvation = -4029.022332 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.36132 -39.97534 -39.44075 -37.48802 -36.41366 -34.85292 -33.60121 -33.09137 -32.05790 -31.49717 -30.23435 -28.32010 -26.06454 -25.11315 -24.43556 -23.83246 -22.69884 -22.49329 -21.96721 -21.20266 -20.97096 -18.80959 -18.58766 -17.61007 -17.38319 -17.26622 -16.93351 -16.24202 -16.20648 -15.95901 -15.85719 -15.82101 -15.57708 -15.47986 -15.04616 -14.60325 -14.54946 -14.44450 -14.33724 -14.01746 -13.71920 -13.51440 -13.08168 -12.95245 -12.79339 -12.72434 -12.66230 -12.38819 -12.23640 -12.20456 -12.06601 -11.97536 -11.91664 -11.88547 -11.69782 -11.54155 -11.44914 -11.23203 -11.16827 -10.71531 -10.53128 -10.16617 -9.34623 -8.89737 -8.17846 -5.49274 1.29560 1.41345 1.49618 1.51330 1.91481 2.41035 2.89465 3.02299 3.07180 3.36481 3.47168 3.69148 3.84374 3.87306 3.99280 4.01869 4.09089 4.17094 4.22199 4.23099 4.25779 4.40306 4.41255 4.45590 4.54332 4.60033 4.63774 4.67042 4.68460 4.71576 4.76877 4.81815 4.85618 4.88608 4.90106 4.93668 4.98125 5.01388 5.08284 5.10498 5.12537 5.22461 5.29621 5.39360 5.45861 5.52678 5.76767 5.81789 6.08597 6.13859 6.26753 6.50200 6.88894 7.18127 7.60192 8.03052 9.02050 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.036303 B = 0.001387 C = 0.001364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.099248 B =20175.402297 C =20517.961070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.958 5.958 2 C -0.035 4.035 3 Si 0.950 3.050 4 H -0.273 1.273 5 H -0.309 1.309 6 H -0.264 1.264 7 C -0.251 4.251 8 H 0.052 0.948 9 N -0.624 5.624 10 C 0.125 3.875 11 C 0.052 3.948 12 N -0.539 5.539 13 C 0.053 3.947 14 C -0.104 4.104 15 C -0.111 4.111 16 C -0.116 4.116 17 C 0.120 3.880 18 N -0.712 5.712 19 C 0.504 3.496 20 O -0.581 6.581 21 C 0.057 3.943 22 H 0.122 0.878 23 C -0.142 4.142 24 C -0.153 4.153 25 C 0.036 3.964 26 O -0.391 6.391 27 C 0.051 3.949 28 C 0.145 3.855 29 H 0.262 0.738 30 H 0.036 0.964 31 H 0.052 0.948 32 H 0.092 0.908 33 H 0.020 0.980 34 H 0.078 0.922 35 H 0.025 0.975 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.082 0.918 41 H 0.083 0.917 42 H 0.055 0.945 43 H 0.054 0.946 44 H 0.419 0.581 45 H 0.122 0.878 46 H 0.078 0.922 47 H 0.112 0.888 48 H 0.065 0.935 49 H 0.086 0.914 50 H 0.097 0.903 51 H 0.016 0.984 52 H 0.104 0.896 53 H 0.038 0.962 54 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.877 -17.663 -4.200 37.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.230 4.230 3 Si 0.778 3.222 4 H -0.199 1.199 5 H -0.238 1.238 6 H -0.188 1.188 7 C -0.381 4.381 8 H 0.070 0.930 9 N -0.350 5.350 10 C 0.000 4.000 11 C -0.078 4.078 12 N -0.264 5.264 13 C -0.074 4.074 14 C -0.142 4.142 15 C -0.150 4.150 16 C -0.154 4.154 17 C -0.004 4.004 18 N -0.366 5.366 19 C 0.290 3.710 20 O -0.460 6.460 21 C -0.004 4.004 22 H 0.139 0.861 23 C -0.179 4.179 24 C -0.191 4.191 25 C -0.040 4.040 26 O -0.310 6.310 27 C -0.078 4.078 28 C 0.020 3.980 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.070 0.930 32 H 0.110 0.890 33 H 0.038 0.962 34 H 0.096 0.904 35 H 0.043 0.957 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.257 0.743 45 H 0.140 0.860 46 H 0.097 0.903 47 H 0.130 0.870 48 H 0.083 0.917 49 H 0.104 0.896 50 H 0.116 0.884 51 H 0.034 0.966 52 H 0.122 0.878 53 H 0.056 0.944 54 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 32.988 -17.208 -4.950 37.534 hybrid contribution -1.115 0.455 -0.159 1.215 sum 31.873 -16.752 -5.110 36.368 Atomic orbital electron populations 1.69962 1.07391 1.27255 1.55784 1.25883 0.95844 1.00972 1.00285 0.85878 0.78489 0.80071 0.77713 1.19946 1.23833 1.18844 1.18894 0.86651 0.93651 1.38863 0.93005 1.44561 1.07744 1.33503 1.49154 1.21456 0.95980 0.92000 0.90605 1.22434 0.93165 0.96140 0.96015 1.61944 1.23404 1.18940 1.22124 1.22223 0.94696 0.97852 0.92651 1.21495 0.95328 0.99363 0.98034 1.21401 0.96021 0.99679 0.97864 1.21680 0.96233 1.00463 0.97023 1.21370 0.86782 0.95509 0.96734 1.45831 1.26394 1.53183 1.11162 1.21161 0.84198 0.78778 0.86830 1.90707 1.75997 1.62141 1.17175 1.22864 0.90313 0.97806 0.89432 0.86085 1.23013 1.01976 0.91892 1.01052 1.23162 0.97129 0.98081 1.00710 1.23918 0.96656 0.83818 0.99622 1.89025 1.63798 1.38487 1.39690 1.22531 0.97131 0.93292 0.94827 1.21209 0.91552 0.90641 0.94593 0.92926 0.94635 0.93009 0.89020 0.96212 0.90366 0.95653 0.91548 0.90970 0.91494 0.91993 0.89976 0.89865 0.92646 0.92735 0.74344 0.85996 0.90308 0.86997 0.91660 0.89597 0.88437 0.96609 0.87785 0.94412 0.92160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.84 13.97 21.65 0.30 -60.54 16 2 C -0.04 -2.08 5.24 84.86 0.44 -1.64 16 3 Si 0.95 47.25 24.30 68.60 1.67 48.92 16 4 H -0.27 -12.75 6.58 99.48 0.65 -12.09 16 5 H -0.31 -15.56 7.11 99.48 0.71 -14.86 16 6 H -0.26 -12.71 6.61 99.48 0.66 -12.05 16 7 C -0.25 -14.52 10.08 84.03 0.85 -13.68 16 8 H 0.05 3.26 8.05 -2.91 -0.02 3.24 16 9 N -0.62 -30.09 2.82 -698.12 -1.97 -32.06 16 10 C 0.12 5.42 4.35 86.35 0.38 5.79 16 11 C 0.05 1.81 5.62 86.39 0.49 2.29 16 12 N -0.54 -16.11 4.63 -895.24 -4.14 -20.26 16 13 C 0.05 1.18 4.96 86.31 0.43 1.61 16 14 C -0.10 -1.68 5.15 30.60 0.16 -1.52 16 15 C -0.11 -1.38 5.21 30.60 0.16 -1.22 16 16 C -0.12 -1.05 5.33 30.60 0.16 -0.89 16 17 C 0.12 1.59 5.67 86.38 0.49 2.08 16 18 N -0.71 -8.02 5.53 -463.05 -2.56 -10.58 16 19 C 0.50 9.26 6.95 87.66 0.61 9.87 16 20 O -0.58 -17.50 16.53 15.69 0.26 -17.24 16 21 C 0.06 0.68 3.84 30.22 0.12 0.80 16 22 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 23 C -0.14 -0.76 6.62 31.59 0.21 -0.55 16 24 C -0.15 -0.94 7.16 31.89 0.23 -0.71 16 25 C 0.04 0.33 7.72 72.66 0.56 0.89 16 26 O -0.39 -7.30 10.75 -130.27 -1.40 -8.70 16 27 C 0.05 1.59 5.46 86.38 0.47 2.06 16 28 C 0.14 5.61 6.69 86.35 0.58 6.19 16 29 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 30 H 0.04 1.53 6.94 -2.39 -0.02 1.51 16 31 H 0.05 2.46 4.60 -2.39 -0.01 2.45 16 32 H 0.09 2.68 7.99 -2.38 -0.02 2.66 16 33 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.08 1.61 7.97 -2.39 -0.02 1.59 16 35 H 0.03 0.59 8.13 -2.38 -0.02 0.57 16 36 H 0.07 1.05 6.40 -2.39 -0.02 1.04 16 37 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 41 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.42 1.60 8.47 -92.71 -0.79 0.81 16 45 H 0.12 -0.13 8.14 -2.39 -0.02 -0.15 16 46 H 0.08 0.51 7.69 -2.39 -0.02 0.49 16 47 H 0.11 0.11 8.14 -2.39 -0.02 0.09 16 48 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 49 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 50 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 51 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 52 H 0.10 2.49 6.16 -2.39 -0.01 2.48 16 53 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 54 H 0.06 2.33 7.95 -2.39 -0.02 2.31 16 Total: -1.00 -81.58 413.81 -1.55 -83.13 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: -0.02 Total: 5.96 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: 6.32 Total: 11.37 kcal Atomic # 7 Polarization: -115.07 SS G_CDS: -8.37 Total: -123.44 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -1.14 Total: -25.94 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 1.67 Total: 48.92 kcal Total: -81.58 -1.55 -83.13 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274872453.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.016 kcal (2) G-P(sol) polarization free energy of solvation -81.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds