Wall clock time and date at job start Sat Apr 11 2020 05:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46500 * 120.00083 * 2 1 4 4 C 1.53002 * 109.47068 * 269.99967 * 3 2 1 5 5 C 1.52998 * 109.46816 * 300.00101 * 4 3 2 6 6 C 1.53001 * 109.47242 * 59.99845 * 4 3 2 7 7 C 1.52999 * 109.47138 * 179.97438 * 4 3 2 8 8 N 1.46903 * 109.46997 * 179.97438 * 7 4 3 9 9 C 1.46900 * 110.99831 * 180.02562 * 8 7 4 10 10 C 1.50697 * 109.47114 * 179.97438 * 9 8 7 11 11 O 1.21297 * 119.99693 * 0.02562 * 10 9 8 12 12 N 1.34771 * 119.99956 * 179.97438 * 10 9 8 13 13 C 1.37103 * 120.00020 * 180.02562 * 12 10 9 14 14 H 1.07997 * 119.99654 * 0.02562 * 13 12 10 15 15 C 1.38943 * 120.00128 * 180.02562 * 13 12 10 16 16 N 1.31418 * 120.00260 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00201 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.46782 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47340 * 119.99419 * 17 15 13 20 20 H 1.48498 * 109.47199 * 239.99736 * 17 15 13 21 21 C 1.34773 * 119.99682 * 179.97438 * 2 1 3 22 22 O 1.21281 * 119.99619 * 180.02562 * 21 2 1 23 23 C 1.50700 * 120.00098 * 0.02562 * 21 2 1 24 24 H 1.08997 * 115.56399 * 325.68565 * 23 21 2 25 25 C 1.53069 * 117.49354 * 111.40043 * 23 21 2 26 26 C 1.52994 * 59.98565 * 107.48173 * 25 23 21 27 27 C 1.53006 * 117.49618 * 107.50105 * 26 25 23 28 28 C 1.53001 * 117.50191 * 252.49542 * 26 25 23 29 29 H 1.08993 * 109.47368 * 270.00498 * 1 2 3 30 30 H 1.09002 * 109.47082 * 30.00296 * 1 2 3 31 31 H 1.08999 * 109.47448 * 150.00080 * 1 2 3 32 32 H 1.09001 * 109.47011 * 29.99436 * 3 2 1 33 33 H 1.08995 * 109.47245 * 149.99378 * 3 2 1 34 34 H 1.08998 * 109.47293 * 59.99811 * 5 4 3 35 35 H 1.08998 * 109.46871 * 180.02562 * 5 4 3 36 36 H 1.09004 * 109.46839 * 300.00045 * 5 4 3 37 37 H 1.08995 * 109.47025 * 60.00198 * 6 4 3 38 38 H 1.08998 * 109.46983 * 179.97438 * 6 4 3 39 39 H 1.08998 * 109.47032 * 300.00290 * 6 4 3 40 40 H 1.08995 * 109.47225 * 299.99861 * 7 4 3 41 41 H 1.09004 * 109.47109 * 59.99592 * 7 4 3 42 42 H 1.00902 * 111.00026 * 303.95323 * 8 7 4 43 43 H 1.09004 * 109.47303 * 300.00354 * 9 8 7 44 44 H 1.09001 * 109.47153 * 59.99843 * 9 8 7 45 45 H 0.97001 * 120.00413 * 0.02562 * 12 10 9 46 46 H 0.96996 * 120.00233 * 180.02562 * 16 15 13 47 47 H 1.09001 * 117.49351 * 359.97438 * 25 23 21 48 48 H 1.09000 * 117.53259 * 214.95213 * 25 23 21 49 49 H 1.09001 * 109.47002 * 231.24993 * 27 26 25 50 50 H 1.08993 * 109.46955 * 351.25430 * 27 26 25 51 51 H 1.09000 * 109.47050 * 111.25259 * 27 26 25 52 52 H 1.09003 * 109.47208 * 248.75020 * 28 26 25 53 53 H 1.09007 * 109.46774 * 8.74542 * 28 26 25 54 54 H 1.08995 * 109.47098 * 128.74788 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7104 -1.4425 5 6 3.2794 0.6440 -2.1637 6 6 1.1157 1.8933 -2.1638 7 6 3.2170 3.0357 -1.4425 8 7 3.4624 3.4594 -2.8276 9 6 4.1967 4.7311 -2.8668 10 6 4.4299 5.1325 -4.3005 11 8 4.0239 4.4286 -5.2010 12 7 5.0886 6.2741 -4.5820 13 6 5.3004 6.6395 -5.8863 14 1 4.9389 6.0128 -6.6881 15 6 5.9800 7.8161 -6.1766 16 7 6.4194 8.5790 -5.2009 17 14 6.2679 8.3144 -7.9538 18 1 5.6785 7.2927 -8.8560 19 1 5.6272 9.6296 -8.2091 20 1 7.7272 8.4168 -8.2090 21 6 2.1388 -1.1672 0.0005 22 8 3.3516 -1.1672 0.0010 23 6 1.3853 -2.4723 0.0005 24 1 0.4466 -2.4734 0.5545 25 6 1.4615 -3.3323 -1.2635 26 6 2.2074 -3.7626 0.0011 27 6 1.6488 -4.9558 0.7792 28 6 3.7316 -3.6293 0.0022 29 1 -0.3634 0.0001 1.0276 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3634 -0.8900 -0.5138 32 1 1.6084 2.0284 0.5138 33 1 3.1499 1.1384 0.5139 34 1 2.7344 -0.2999 -2.1636 35 1 3.4615 0.9589 -3.1912 36 1 4.2318 0.5137 -1.6498 37 1 0.5267 2.6530 -1.6500 38 1 1.2974 2.2084 -3.1913 39 1 0.5707 0.9494 -2.1638 40 1 2.6276 3.7951 -0.9289 41 1 4.1694 2.9058 -0.9285 42 1 3.9519 2.7436 -3.3434 43 1 3.6142 5.5027 -2.3632 44 1 5.1557 4.6127 -2.3624 45 1 5.4130 6.8372 -3.8618 46 1 6.8936 9.4006 -5.4036 47 1 2.0563 -2.9535 -2.0947 48 1 0.5731 -3.8994 -1.5413 49 1 1.5388 -4.6854 1.8294 50 1 0.6766 -5.2324 0.3714 51 1 2.3332 -5.7996 0.6910 52 1 4.1831 -4.6214 0.0010 53 1 4.0493 -3.0844 -0.8868 54 1 4.0482 -3.0871 0.8932 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001275661839.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:32 Heat of formation + Delta-G solvation = -71.540129 kcal Electronic energy + Delta-G solvation = -30330.602918 eV Core-core repulsion = 26302.257109 eV Total energy + Delta-G solvation = -4028.345809 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.58986 -40.23405 -39.35567 -37.83320 -36.45261 -35.90752 -34.28438 -33.24559 -30.50661 -28.97279 -28.83855 -28.31795 -28.24673 -26.86049 -26.66519 -25.03493 -23.68492 -21.15994 -20.86302 -19.99300 -19.71648 -19.40195 -18.13925 -17.83437 -17.23066 -16.80647 -16.76282 -16.46254 -15.94344 -15.62791 -15.38075 -15.35427 -15.09278 -14.73130 -14.47935 -14.34535 -14.21342 -14.17215 -13.85774 -13.81509 -13.52484 -13.47498 -13.30472 -13.16109 -13.00801 -12.85034 -12.77433 -12.68371 -12.49667 -12.42158 -12.38410 -12.12804 -12.12331 -11.95776 -11.63422 -11.57572 -11.52484 -11.13285 -10.74664 -10.39433 -10.33310 -10.02880 -9.52170 -9.30828 -8.48026 -5.96973 1.35572 1.40654 1.55086 1.56105 2.03481 2.04392 2.28464 2.82617 2.94898 3.19001 3.51657 3.55410 3.71465 3.83617 3.87879 3.90003 3.96247 4.13624 4.20793 4.31639 4.39167 4.40305 4.45766 4.53973 4.55166 4.66086 4.69071 4.74097 4.80399 4.82379 4.83302 4.84499 4.86440 4.97274 4.98569 5.06270 5.08385 5.10548 5.11942 5.13112 5.18329 5.31849 5.36666 5.39757 5.52762 5.59076 5.63402 5.88861 6.10737 6.35752 6.47925 6.58774 7.11202 7.29567 7.54600 8.10036 8.69619 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.025134 B = 0.001839 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.761197 B =15218.429445 C =15560.156426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.607 5.607 3 C 0.131 3.869 4 C -0.067 4.067 5 C -0.122 4.122 6 C -0.126 4.126 7 C 0.072 3.928 8 N -0.675 5.675 9 C 0.064 3.936 10 C 0.438 3.562 11 O -0.624 6.624 12 N -0.573 5.573 13 C -0.334 4.334 14 H 0.078 0.922 15 C -0.013 4.013 16 N -0.920 5.920 17 Si 0.994 3.006 18 H -0.274 1.274 19 H -0.269 1.269 20 H -0.271 1.271 21 C 0.532 3.468 22 O -0.566 6.566 23 C -0.187 4.187 24 H 0.146 0.854 25 C -0.140 4.140 26 C -0.104 4.104 27 C -0.111 4.111 28 C -0.097 4.097 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.066 0.934 34 H 0.047 0.953 35 H 0.038 0.962 36 H 0.040 0.960 37 H 0.064 0.936 38 H 0.042 0.958 39 H 0.061 0.939 40 H 0.089 0.911 41 H 0.030 0.970 42 H 0.339 0.661 43 H 0.108 0.892 44 H 0.061 0.939 45 H 0.397 0.603 46 H 0.278 0.722 47 H 0.079 0.921 48 H 0.129 0.871 49 H 0.063 0.937 50 H 0.075 0.925 51 H 0.067 0.933 52 H 0.058 0.942 53 H 0.040 0.960 54 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.557 -22.099 17.700 31.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.338 5.338 3 C 0.007 3.993 4 C -0.069 4.069 5 C -0.180 4.180 6 C -0.183 4.183 7 C -0.057 4.057 8 N -0.308 5.308 9 C -0.068 4.068 10 C 0.225 3.775 11 O -0.510 6.510 12 N -0.210 5.210 13 C -0.464 4.464 14 H 0.096 0.904 15 C -0.213 4.213 16 N -0.561 5.561 17 Si 0.818 3.182 18 H -0.199 1.199 19 H -0.194 1.194 20 H -0.196 1.196 21 C 0.322 3.678 22 O -0.445 6.445 23 C -0.208 4.208 24 H 0.164 0.836 25 C -0.177 4.177 26 C -0.105 4.105 27 C -0.168 4.168 28 C -0.154 4.154 29 H 0.090 0.910 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.120 0.880 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.083 0.917 38 H 0.061 0.939 39 H 0.080 0.920 40 H 0.107 0.893 41 H 0.048 0.952 42 H 0.159 0.841 43 H 0.126 0.874 44 H 0.079 0.921 45 H 0.230 0.770 46 H 0.087 0.913 47 H 0.098 0.902 48 H 0.147 0.853 49 H 0.082 0.918 50 H 0.094 0.906 51 H 0.086 0.914 52 H 0.077 0.923 53 H 0.059 0.941 54 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -14.720 -22.066 17.048 31.531 hybrid contribution 1.613 0.724 -0.454 1.826 sum -13.107 -21.342 16.594 30.043 Atomic orbital electron populations 1.22173 0.77512 1.04677 1.03136 1.47780 1.08181 1.05059 1.72812 1.21409 0.97664 0.85290 0.94920 1.20866 0.96382 0.93593 0.96021 1.21704 0.99211 0.98058 0.99027 1.21764 0.95072 1.01198 1.00271 1.22004 0.98753 0.96626 0.88345 1.60157 1.52323 1.04366 1.13938 1.21546 0.98382 0.94536 0.92382 1.20884 0.82033 0.82514 0.92048 1.90488 1.55880 1.54904 1.49733 1.41936 1.50240 1.20717 1.08151 1.19707 1.35410 1.06527 0.84740 0.90399 1.26056 0.95966 0.95393 1.03896 1.69680 1.38422 1.14490 1.33505 0.84856 0.78248 0.78148 0.76976 1.19876 1.19443 1.19588 1.20155 0.87213 0.85348 0.75097 1.90708 1.15365 1.87514 1.50893 1.22463 1.02811 0.89305 1.06224 0.83598 1.23251 1.03341 1.00938 0.90184 1.21677 0.94156 0.94253 1.00378 1.21383 1.01317 0.94693 0.99388 1.21234 0.92509 1.00129 1.01559 0.90984 0.89694 0.89742 0.88007 0.91578 0.93416 0.94256 0.94070 0.91685 0.93921 0.92042 0.89291 0.95203 0.84124 0.87432 0.92127 0.76959 0.91278 0.90234 0.85326 0.91778 0.90626 0.91405 0.92289 0.94088 0.93372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.58 8.91 127.77 1.14 1.72 16 2 N -0.61 -9.74 2.40 -846.76 -2.03 -11.77 16 3 C 0.13 2.35 4.60 86.38 0.40 2.75 16 4 C -0.07 -1.47 0.67 -52.18 -0.03 -1.51 16 5 C -0.12 -3.30 6.81 71.98 0.49 -2.81 16 6 C -0.13 -2.67 7.07 71.98 0.51 -2.16 16 7 C 0.07 1.76 4.65 86.30 0.40 2.16 16 8 N -0.67 -22.33 5.34 -517.93 -2.76 -25.09 16 9 C 0.06 2.29 6.17 85.56 0.53 2.81 16 10 C 0.44 21.55 7.82 87.66 0.69 22.23 16 11 O -0.62 -35.71 15.78 -3.08 -0.05 -35.76 16 12 N -0.57 -30.21 5.29 -306.99 -1.62 -31.83 16 13 C -0.33 -19.43 9.68 84.04 0.81 -18.62 16 14 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 15 C -0.01 -0.73 5.50 84.92 0.47 -0.26 16 16 N -0.92 -50.34 13.05 21.66 0.28 -50.06 16 17 Si 0.99 43.67 29.55 68.60 2.03 45.70 16 18 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 19 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 20 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 21 C 0.53 10.70 5.85 87.66 0.51 11.21 16 22 O -0.57 -15.59 10.88 -3.03 -0.03 -15.62 16 23 C -0.19 -2.61 4.52 -11.52 -0.05 -2.66 16 24 H 0.15 1.23 7.26 -2.39 -0.02 1.22 16 25 C -0.14 -1.85 9.53 30.62 0.29 -1.56 16 26 C -0.10 -1.53 2.70 -52.18 -0.14 -1.67 16 27 C -0.11 -1.03 9.85 71.98 0.71 -0.32 16 28 C -0.10 -1.93 8.09 71.98 0.58 -1.35 16 29 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.08 0.69 6.05 -2.39 -0.01 0.67 16 31 H 0.08 0.55 6.64 -2.39 -0.02 0.53 16 32 H 0.10 1.33 8.07 -2.39 -0.02 1.31 16 33 H 0.07 1.45 7.42 -2.39 -0.02 1.43 16 34 H 0.05 1.27 6.15 -2.39 -0.01 1.26 16 35 H 0.04 1.18 6.57 -2.39 -0.02 1.16 16 36 H 0.04 1.22 7.73 -2.38 -0.02 1.20 16 37 H 0.06 1.18 8.08 -2.39 -0.02 1.16 16 38 H 0.04 1.19 7.60 -2.39 -0.02 1.18 16 39 H 0.06 1.11 5.99 -2.39 -0.01 1.10 16 40 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.03 0.73 8.14 -2.38 -0.02 0.71 16 42 H 0.34 12.41 6.47 -89.69 -0.58 11.83 16 43 H 0.11 3.39 8.14 -2.38 -0.02 3.37 16 44 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.40 19.79 7.90 -92.71 -0.73 19.06 16 46 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 47 H 0.08 1.39 8.05 -2.39 -0.02 1.38 16 48 H 0.13 1.02 8.05 -2.39 -0.02 1.00 16 49 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 50 H 0.07 0.45 7.90 -2.39 -0.02 0.44 16 51 H 0.07 0.60 7.93 -2.39 -0.02 0.58 16 52 H 0.06 0.98 7.93 -2.39 -0.02 0.96 16 53 H 0.04 1.00 7.01 -2.38 -0.02 0.98 16 54 H 0.05 1.12 7.26 -2.39 -0.02 1.10 16 Total: -1.00 -73.29 416.38 2.69 -70.60 By element: Atomic # 1 Polarization: 44.27 SS G_CDS: -0.41 Total: 43.86 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: 7.30 Total: 9.98 kcal Atomic # 7 Polarization: -112.62 SS G_CDS: -6.13 Total: -118.75 kcal Atomic # 8 Polarization: -51.30 SS G_CDS: -0.08 Total: -51.38 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -73.29 2.69 -70.60 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001275661839.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.942 kcal (2) G-P(sol) polarization free energy of solvation -73.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds